View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5225_low_1 (Length: 833)
Name: NF5225_low_1
Description: NF5225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5225_low_1 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 752; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 752; E-Value: 0
Query Start/End: Original strand, 13 - 816
Target Start/End: Complemental strand, 48479839 - 48479036
Alignment:
| Q |
13 |
atactaataagcgtgtgagtcctccaagaacggaaagatatttattttccttagtactggtcaaattgtccaattgatgattacatccggtcctaagagt |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48479839 |
atactaataagcgtgtgagtcctccaagaacggaaagatatttattttccttagtactggtcaaattgtccaattgatgattacatccggtcctaagagt |
48479740 |
T |
|
| Q |
113 |
agttacgcacctccgttctccacgtagaaagaaagtgtgtttggttttggcaactcgtaatacatatacatttgtctcacaccacagggttaaggttaag |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48479739 |
agttacgcacctccgttctccacgtagaaagaaagtgtgtttggttttggcaactcgtaatacatatacatttgtctcacaccacagggttaaggttaag |
48479640 |
T |
|
| Q |
213 |
gagtcttgacttgagattccttaaacaatacaatacaatgttttcaaaacattttgctatcatcatccttgtcttcctctttctcacatcttacttaatt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48479639 |
gagtcttgacttgagattccttaaacaatacaatacaatgttttcaaaacattttgctatcatcatccttgtcttcctctttctcacatcttacttaatt |
48479540 |
T |
|
| Q |
313 |
gcagacacaacttcctgggttaaagctggttattatttttccagtaatgaaatggaagcttcggagataaaatcaacacttttcacacacctcttatgtg |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48479539 |
gcagacacaacttcctgggttaaagctggttattatttttccagtaatgaaatggaagcttcggagataaaatcaacacttttcacacacctcttatgtg |
48479440 |
T |
|
| Q |
413 |
tttttgctctcataaattccacagactacagcatctttataaataactctgagtattctaaatttgactccttcaccaccagagtaaagcttcaaaatca |
512 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
48479439 |
cttttgctttcataaattccacagactacagcatctttataaatgactctgagtattctaaattcgactccttcaccaccagagtaaagcttcaaaatcc |
48479340 |
T |
|
| Q |
513 |
ttctgttacatctcttttatcactcttaattggaggagaaaattcttcactttttaactcgttgataaaccaatcttcttatagaaaatctttcattgat |
612 |
Q |
| |
|
|||||||||||||||| ||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48479339 |
ttctgttacatctcttctatcaatctacactggaggagaaaattcttcactttttaactcgttgataaaccaatcttcttatagaaaatctttcattgat |
48479240 |
T |
|
| Q |
613 |
tcctccatcagaacagcaagacaatttgactttcaaggcatagacttttgtggtgcagtgccaaaacagggcaaagatcttgttaatttcgcaacccttt |
712 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48479239 |
tcctccatcagaacggcaagacgatttgactttcaaggcatagacttttgtggtgcagggccaaaacagggcaaagatcttgttaatttcgcaacccttt |
48479140 |
T |
|
| Q |
713 |
tgaaagagtggcgaattgcaataacttctgaggcaagaaacactaaaagatcagaattagtgttggtgatgacaggttattatcttaaagcttcagattc |
812 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48479139 |
tgaaagagtggcgaattgcaataacttctgaggcaagaaacactaaaagatcagaattagtgttggtgatgacaggttattatcttaaagcttcagattc |
48479040 |
T |
|
| Q |
813 |
cctt |
816 |
Q |
| |
|
|||| |
|
|
| T |
48479039 |
cctt |
48479036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 230 - 816
Target Start/End: Complemental strand, 48471256 - 48470674
Alignment:
| Q |
230 |
tccttaaacaatacaatacaatgttttcaaaacattttgctatcatcatccttgtcttcctctttctcacatcttacttaattgcagacacaacttcctg |
329 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
48471256 |
tccttaaacaatacta-acaatgttttcaaaacatttttctatcttc---cttgtcttcctctttctcacatcttactcaattgcagacacaacttcctg |
48471161 |
T |
|
| Q |
330 |
ggttaaagctggttattatttttccagtaatgaaatggaagcttcggagataaaatcaacacttttcacacacctcttatgtgtttttgctctcataaat |
429 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
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|
| T |
48471160 |
ggttaaatctggttattatttttccagtaatgaaattgaagcttcagagataaaatcaacacttttcacacacctcttatgtgcttttgctttcataaat |
48471061 |
T |
|
| Q |
430 |
tccacagactacagcatctttataaataactctgagtattctaaatttgactccttcaccaccagagtaaagcttcaaaatcattctgttacatctcttt |
529 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| || ||| | |||||||||| ||||||||||||||||| | |||||||||||||||| |
|
|
| T |
48471060 |
tccacagactacagcatctttataaatgactctgagtattatagattcgcgtccttcaccagaagagtaaagcttcaaaacccatctgttacatctcttt |
48470961 |
T |
|
| Q |
530 |
tatcactcttaattggaggagaaaattcttcactttttaactcgttgataaaccaatcttcttatagaaaatctttcattgattcctccatcagaacagc |
629 |
Q |
| |
|
||||| ||| | ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
48470960 |
tatcaatctacactggaggacaaaattcttcactttttaactcattgataaaccaatcttcttatagaaaatctttcattggttcctccatcagaacagc |
48470861 |
T |
|
| Q |
630 |
aagacaatttgactttcaaggcatagacttttgtggtgcagtgccaaaacagggcaaagatcttgttaatttcgcaacccttttgaaagagtggcgaatt |
729 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |
|
|
| T |
48470860 |
aagacaatttgactttcaaggcatagacttttgtggtgcagtgccaaaacagggcaaagatcttgtcaatttcgcaacccttttgaaagagtggcgagtt |
48470761 |
T |
|
| Q |
730 |
gcaataacttctgaggcaagaaacactaaaagatcagaattagtgttggtgatgacaggttattatcttaaagcttcagattccctt |
816 |
Q |
| |
|
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48470760 |
gcgataacttctgaggcaagtaacactaaaagatcagaattagtgttggtgatgacaggttattatcttaaagcttcagattccctt |
48470674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 237 - 816
Target Start/End: Original strand, 48882729 - 48883308
Alignment:
| Q |
237 |
acaatacaatacaatgttttcaaaacattttgctatcatcatccttgtcttcctctttctcacatcttacttaattgcagacacaacttcctgggttaaa |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||| || |||||||||||| ||||| ||| |
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|
| T |
48882729 |
acaatacaatacaatgttttcaaaacatttcgctatcatcatccctgtcttcctctttttcacatcttactcaaaatcagacacaactttttgggtaaaa |
48882828 |
T |
|
| Q |
337 |
gctggttattatttttccagtaatgaaatggaagcttcggagataaaatcaacacttttcacacacctcttatgtgtttttgctctcataaattccacag |
436 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
48882829 |
gccggttattatttttccagtaatgaaatggaagcttcggagataaaatcaacacttttcacacacctcttatgtgcttttgctttcataaattccacag |
48882928 |
T |
|
| Q |
437 |
actacagcatctttataaataactctgagtattctaaatttgactccttcaccaccagagtaaagcttcaaaatcattctgttacatctcttttatcact |
536 |
Q |
| |
|
|||||| |||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |
|
|
| T |
48882929 |
actacatcatctttacaaatgactctgagtattctaaattcgactccttcaccaccagagtaaagcttcaaaatccttctgttacatctcttttatcaat |
48883028 |
T |
|
| Q |
537 |
cttaattggaggagaaaattcttcactttttaactcgttgataaaccaatcttcttatagaaaatctttcattgattcctccatcagaacagcaagacaa |
636 |
Q |
| |
|
|| | ||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |
|
|
| T |
48883029 |
ctacactggaggacaaaattcttcactttttaactcattgttaaaccaatcttcttatagaaaatctttcattgattcctccatcagaacggcaagacga |
48883128 |
T |
|
| Q |
637 |
tttgactttcaaggcatagacttttgtggtgcagtgccaaaacagggcaaagatcttgttaatttcgcaacccttttgaaagagtggcgaattgcaataa |
736 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||||||||||||| |||||| |||||| ||||||||||||||||||||||| |||| |||| |
|
|
| T |
48883129 |
tttgactttcaaggcatagacttttgtggtgcagggctaaaacagggcaaagttcttgtcaatttcacaacccttttgaaagagtggcgagttgcgataa |
48883228 |
T |
|
| Q |
737 |
cttctgaggcaagaaacactaaaagatcagaattagtgttggtgatgacaggttattatcttaaagcttcagattccctt |
816 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
48883229 |
cttctgaggcaagtaacactaaaagatcagaattagtgttgctgatgacaggttattatcttaaaccttcagattccctt |
48883308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 246 - 813
Target Start/End: Complemental strand, 48488075 - 48487508
Alignment:
| Q |
246 |
tacaatgttttcaaaacattttgctatcatcatccttgtcttcctctttctcacatcttacttaattgcag---acacaacttcctgggttaaagctggt |
342 |
Q |
| |
|
||||||| ||||||| |||||||||||| || |||||||||||||||||||||||| ||| | |||||| |||||||||| ||| | ||||||||| |
|
|
| T |
48488075 |
tacaatgatttcaaatcattttgctatcttc---cttgtcttcctctttctcacatctcactcatttgcagcagacacaacttcttggatcaaagctggt |
48487979 |
T |
|
| Q |
343 |
tattatttttccagtaatgaaatggaagcttcggagataaaatcaacacttttcacacacctcttatgtgtttttgctctcataaattccacagactaca |
442 |
Q |
| |
|
||||| | ||| | | |||||| |||||| || |||||||| | |||||||||||||| ||||||| ||||||| | ||||| |||||| |||||| |
|
|
| T |
48487978 |
tattactattcaggcagtgaaatttcagcttctgacataaaatccaatcttttcacacaccttttatgtgcttttgcttttataaactccacaaactaca |
48487879 |
T |
|
| Q |
443 |
gcatctttataaataactctgagtattctaaatttgactccttcaccaccagagtaaagcttcaaaatcattctgttacatctcttttatcactcttaat |
542 |
Q |
| |
|
|||||||| || ||||| | ||||| | |||| |||| | ||||||||||||||||| ||||||||| ||||| | ||| ||| | |
|
|
| T |
48487878 |
atatctttattaactcatctgaagaacacaaattctccacctttaccaatacagtaaagcttcaaaatccatctgttacaactcttctttcaatctacac |
48487779 |
T |
|
| Q |
543 |
tggaggagaaaattcttcactttttaactcgttgataaaccaatcttcttatagaaaatctttcattgattcctccatcagaacagcaagacaatttgac |
642 |
Q |
| |
|
| |||||| |||||| ||||| ||| ||||||||||||||||| | || ||||||||||||||||| ||||||| |||||||||| | | || |
|
|
| T |
48487778 |
caaaacagaaaactcttcagttttttcctcactgataaaccaatcttctaacaggaaatctttcattgattcttccatcaaaacagcaagaaactatggg |
48487679 |
T |
|
| Q |
643 |
tttcaaggcatagacttttgtggtgcagtgccaaaacagggcaaagatcttgttaatttcgcaacccttttgaaagagtggcgaattgcaataacttctg |
742 |
Q |
| |
|
|||||||||||||||||| |||| | |||||| || ||||| || |||| ||||| |||||||||||||| || | |||||| || |||||||||| |
|
|
| T |
48487678 |
tttcaaggcatagactttcgtggagttaagccaaagcaaggcaatgaacttgcaaatttggcaacccttttgaaggaattgcgaatagcgataacttctg |
48487579 |
T |
|
| Q |
743 |
aggcaagaaacactaaaagatcagaattagtgttggtgatgacaggttattatcttaaagcttcagattcc |
813 |
Q |
| |
|
| |||||||||||||||| | |||| ||||| ||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
48487578 |
aagcaagaaacactaaaaaaccagagttagttttggtgatggcaggttattatcttaaagcttcagattcc |
48487508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 48471441 - 48471395
Alignment:
| Q |
32 |
tcctccaagaacggaaagatatttattttccttagtactggtcaaat |
78 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
48471441 |
tcctccaagaacggaaaggtatttattttccttagtacccgtcaaat |
48471395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 191
Target Start/End: Complemental strand, 48471345 - 48471304
Alignment:
| Q |
150 |
tgtttggttttggcaactcgtaatacatatacatttgtctca |
191 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
48471345 |
tgtttggttttggcaacatgtaatacatatacatttgtctca |
48471304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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