View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5225_low_10 (Length: 381)
Name: NF5225_low_10
Description: NF5225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5225_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 17 - 375
Target Start/End: Complemental strand, 40060026 - 40059668
Alignment:
| Q |
17 |
acatattcatttgtcatttactttcaacctttctgcatttagcatgaattcacctcacatgaattatttgataggtaaaagtttttctaaaaaatttcat |
116 |
Q |
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| T |
40060026 |
acatattcatttgtcatttactttcaacctttctgcatttagcatgaattcacctcacatgaattatttgataggtaaaagtttttctgaaaaatttcat |
40059927 |
T |
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| Q |
117 |
ttcaatatggttcaaataaaatttcttggaaacttactatatacgtatactttttcgatttgaattttcttaagaaaagggaaaaaccttacataagttt |
216 |
Q |
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| T |
40059926 |
ttcaatttggttcaaataaaatttctgggaaacttactatatacgtatactttttcgatttgaattttcttaagaaaagggaaaaaccttacataagttt |
40059827 |
T |
|
| Q |
217 |
tccaaaaatattatacaaacataaaaagctttatataagtttttcnnnnnnnttatacaaaccagataattgtatgtatgtttttcgtgaaaatttagta |
316 |
Q |
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| T |
40059826 |
tccaaaaatattatacaaacataaaaagctttatataagtttttcaaaaaaattatacaaaccagataattgtatgtatgtttttcgtgaaaatttagta |
40059727 |
T |
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| Q |
317 |
cacctgaaaagttaaaaagactttttcggtttgtattcaaatactttctttctctgctc |
375 |
Q |
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| T |
40059726 |
cacctgaaaagttaaaaagactttttcggtttgtattcaaatactttctttctctgctc |
40059668 |
T |
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