View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5225_low_11 (Length: 355)
Name: NF5225_low_11
Description: NF5225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5225_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 53 - 170
Target Start/End: Original strand, 15540139 - 15540255
Alignment:
| Q |
53 |
taaattgatttaagttgaaaaaatatgggccattgatatgctttttgccatgtgtcagctttttatgattggaaattgtgattgccatttcttctctaaa |
152 |
Q |
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| T |
15540139 |
taaatttatttaagttgaaaaaatctgggccattgatttgctttttgccacgtgtcatctttttatga-tggaaattgtgattgccatttcttctctaaa |
15540237 |
T |
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| Q |
153 |
tggagaggatctggactc |
170 |
Q |
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|||||||||||||||||| |
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| T |
15540238 |
tggagaggatctggactc |
15540255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 81 - 171
Target Start/End: Complemental strand, 15539408 - 15539318
Alignment:
| Q |
81 |
gccattgatatgctttttgccatgtgtcagctttttatgattggaaattgtgattgccatttcttctctaaatggagaggatctggactca |
171 |
Q |
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| T |
15539408 |
gccattgatatacttcttgccacatgtcagcttattttaattggaaattgtgattgccatttcttctctaaatggagaggatctggactca |
15539318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 184
Target Start/End: Original strand, 47007730 - 47007832
Alignment:
| Q |
82 |
ccattgatatgctttttgccatgtgtcagctttttatgattggaaattgtgattgccatttcttctctaaatggagaggatctggactcaacattcatat |
181 |
Q |
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| T |
47007730 |
ccattgatattaattttcccacgtgtcatgttttaatgaatggaaattgagattgcaatttcctccctaaatggagaggatctgcactcacacttcatat |
47007829 |
T |
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| Q |
182 |
atg |
184 |
Q |
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||| |
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| T |
47007830 |
atg |
47007832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 165
Target Start/End: Complemental strand, 47007110 - 47007026
Alignment:
| Q |
81 |
gccattgatatgctttttgccatgtgtcagctttttatgattggaaattgtgattgccatttcttctctaaatggagaggatctg |
165 |
Q |
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| T |
47007110 |
gccattgatattaatttttccacgtgtcatgttttaatgaatggaaattgagattgcaatttcctccctaaatggagaggatctg |
47007026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 4523234 - 4523181
Alignment:
| Q |
112 |
tttttatgattggaaattgtgattgccatttcttctctaaatggagaggatctg |
165 |
Q |
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| T |
4523234 |
tttttatgattggaaattgagattgtcatttcctcataaaatggagaggatctg |
4523181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 15539830 - 15539874
Alignment:
| Q |
15 |
agtggatctca-caatttttctgtttttaatattctaaataaatt |
58 |
Q |
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| T |
15539830 |
agtggatctcaacaagttttctgtttttgatattctaaataaatt |
15539874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 81 - 170
Target Start/End: Complemental strand, 4275159 - 4275070
Alignment:
| Q |
81 |
gccattgatatgctttttgccatgtgtcagctttttatgattggaaattgtgattgccatttcttctctaaatggagaggatctggactc |
170 |
Q |
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||||||||||| |||| ||| |||||| ||||||||| ||||||||| ||||||||||| | |||||||||||||||||| |||| |
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| T |
4275159 |
gccattgatatttatttttccacgtgtcatgtttttatgaatggaaattgagattgccattttctacctaaatggagaggatctgtactc |
4275070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 170
Target Start/End: Original strand, 29308385 - 29308443
Alignment:
| Q |
112 |
tttttatgattggaaattgtgattgccatttcttctctaaatggagaggatctggactc |
170 |
Q |
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||||||||| | ||||||| |||||| ||||| || |||||||||||||||||| |||| |
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| T |
29308385 |
tttttatgaatagaaattgagattgcaatttcctccctaaatggagaggatctgcactc |
29308443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 29307910 - 29307853
Alignment:
| Q |
112 |
tttttatgattggaaattgtgattgccatttcttctctaaatggagaggatctggact |
169 |
Q |
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||||||||| | ||||||| ||||| ||||| || |||||||||||||||||||||| |
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| T |
29307910 |
tttttatgaatagaaattgacattgcaatttcctccctaaatggagaggatctggact |
29307853 |
T |
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