View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5225_low_13 (Length: 325)
Name: NF5225_low_13
Description: NF5225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5225_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 50878227 - 50878534
Alignment:
| Q |
1 |
gctcttaagaaacaccggctaaaatgagataatgtcatcgttattaataaaaattctcatttaccagtaataaaaactaatgtcatgtttgtactcgnnn |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50878227 |
gctcttaagaaacaccggctaaaatgagataatgtcatcgttattaataaaaattctcatttaccagtaataaaaactaatgtcatgtttgtactcgaaa |
50878326 |
T |
|
| Q |
101 |
nnnnnctaatgtcatgtaaagaaccatcacctaaaatttattacaaccacaagactaaaatttatctccaattaaattccattatgctggaaattatcaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50878327 |
aaaaactaatgtcatgtaaagaaccatcacctaaaatttattacaaccacaagactaaaatttatctccaattaaattccattatgctggaaattatcaa |
50878426 |
T |
|
| Q |
201 |
aacttaaaattatattccttaccggcaagnnnnnnnnnnnnnnnnnntaatcctctcatctatctaaacatagtgggagtggtctagtcttagtctcaga |
300 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50878427 |
aacttaaaattatattccttaccggcaagaaaaagaaagaaaaaaaataatcctctcatctatctaaacatagtgggagtggtctagtcttagtctcaga |
50878526 |
T |
|
| Q |
301 |
caagcatt |
308 |
Q |
| |
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|||||||| |
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| T |
50878527 |
caagcatt |
50878534 |
T |
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