View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5225_low_14 (Length: 317)
Name: NF5225_low_14
Description: NF5225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5225_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 24 - 306
Target Start/End: Original strand, 39726182 - 39726455
Alignment:
| Q |
24 |
aggaaaaagaagcatgcatgttgtatgatgaatagaattaaaaatgcacctatatacgtaatgcaatcatccatattgtatgatgtattatatattgaga |
123 |
Q |
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| T |
39726182 |
aggaaaaagaagcatgcatgttgtctgatgaatagaattaaaaatgcacctatatacgtaatgcaatcatccatattgtatgatgtattatatattgaga |
39726281 |
T |
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| Q |
124 |
gtgggaaaaacagttaacatagttggtgaatttcatctaataaaagagtaaatattaaaaagaacgtgttaaaatgagcattcttagagagaaaaagagg |
223 |
Q |
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| T |
39726282 |
gtgggaaaaacagtta---------gtgaatttcatctaataaaagagtaaatattaaaaagaacgtgttaaaatgagcattcttagagagaaaaagagg |
39726372 |
T |
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| Q |
224 |
tgaagaagagaacaaacccaataagcagcagtgaaaccagcaatcccagaagaaagatgaataacataaccaccagaataatc |
306 |
Q |
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| T |
39726373 |
tgaagaagagaacaaacccaataagcagcggtgaaaccagcaatcccagaagaaagatgaataacataaccaccagaataatc |
39726455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 285
Target Start/End: Complemental strand, 31606235 - 31606189
Alignment:
| Q |
239 |
acccaataagcagcagtgaaaccagcaatcccagaagaaagatgaat |
285 |
Q |
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| T |
31606235 |
acccaataagcagcagtgaaacctgcaacaccagaagatagatgaat |
31606189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 239 - 306
Target Start/End: Original strand, 25670924 - 25670991
Alignment:
| Q |
239 |
acccaataagcagcagtgaaaccagcaatcccagaagaaagatgaataacataaccaccagaataatc |
306 |
Q |
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| T |
25670924 |
acccaataagcagcagtgaaaccagcaattccagaagaaagatgaataacataaccaccagaataatc |
25670991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 291
Target Start/End: Complemental strand, 47501734 - 47501682
Alignment:
| Q |
239 |
acccaataagcagcagtgaaaccagcaatcccagaagaaagatgaataacata |
291 |
Q |
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| T |
47501734 |
acccaataagcagcagtaaaaccagcaacaccagcagagaggtgaataacata |
47501682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 239 - 300
Target Start/End: Original strand, 5625135 - 5625196
Alignment:
| Q |
239 |
acccaataagcagcagtgaaaccagcaatcccagaagaaagatgaataacataaccaccaga |
300 |
Q |
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| T |
5625135 |
acccaataagctgcagtgaatccaccaattccagaagaaagatgaataacatagccaccaga |
5625196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 306
Target Start/End: Original strand, 13349846 - 13349913
Alignment:
| Q |
239 |
acccaataagcagcagtgaaaccagcaatcccagaagaaagatgaataacataaccaccagaataatc |
306 |
Q |
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||||||||||||||||| || ||||||| ||||||||| | |||||| |||||||||||||| ||||| |
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| T |
13349846 |
acccaataagcagcagtaaacccagcaaccccagaagacaaatgaatgacataaccaccagagtaatc |
13349913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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