View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5225_low_19 (Length: 268)
Name: NF5225_low_19
Description: NF5225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5225_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 16 - 254
Target Start/End: Complemental strand, 20338592 - 20338354
Alignment:
| Q |
16 |
atacaccaccttataagtgttggctgatttatcatagccaagcgttaaattaggatagaaatataggccgttgtgaatagagaaccctaattttgcagat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20338592 |
atacaccaccttataagtgttggctgatttatcatagccaagcgttaaattaggatagaaatataggccgttgtgaatagagaaccctaattttgcagat |
20338493 |
T |
|
| Q |
116 |
attttccttatggcagggttccaaaaacgaagccatgtcacactattataattaggggtgaaaaactgaccatacaagcagagtaatccattgtaggaac |
215 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20338492 |
attttccttgtggcagggttccaaaaacgaagccatgtcacactattataattaggggtgaaaaactgaccatacaagcagagtaatccattgtaggaac |
20338393 |
T |
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| Q |
216 |
caacgacatagaggctgtcctctgtaagtttatggtaag |
254 |
Q |
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| T |
20338392 |
caacgacatagaggctgtcctctgtaagtttgtggtaag |
20338354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 62 - 236
Target Start/End: Original strand, 20126586 - 20126760
Alignment:
| Q |
62 |
aaattaggatagaaatataggccgttgtgaatagagaaccctaattttgcagatattttccttatggcagggttccaaaaacgaagccatgtcacactat |
161 |
Q |
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| T |
20126586 |
aaattaggatagaaatatagctcattatggagagagtaccctaatttttcagatattgcccatgtggctggattccaaaaacgaagccacgtaacactat |
20126685 |
T |
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| Q |
162 |
tataattaggggtgaaaaactgaccatacaagcagagtaatccattgtaggaaccaacgacatagaggctgtcct |
236 |
Q |
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| T |
20126686 |
taaaattggaggtgaaaacctaaccaaacaagcagagtaatccattgcaggaaccaacaacaaacaggcagtcct |
20126760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 225
Target Start/End: Original strand, 20133719 - 20133928
Alignment:
| Q |
16 |
atacaccaccttataagtgttggctgatttatcatagccaagcgttaaattaggatagaaatataggccgttgtgaatagagaaccctaattttgcagat |
115 |
Q |
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|||||| ||||| ||||||| || ||| ||| ||||||||| | | |||||||||||||| ||||| | || |||| ||| |||||||||||| ||| |
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| T |
20133719 |
atacacgaccttgtaagtgtcggttgaattaacatagccaaacttcaaattaggatagaaccataggtctttatgaagagaataccctaattttggtgat |
20133818 |
T |
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| Q |
116 |
attttccttatggcagggttccaaaaacgaagccatgtcacactattataattaggggtgaaaaactgaccatacaagcagagtaatccattgtaggaac |
215 |
Q |
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|||||||| |||| |||||||| || ||||| |||| ||||||||| |||| | | ||||||| |||| |||||||||||||||||||| | |||| |
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| T |
20133819 |
attttcctcgtggctgggttccagaagcgaagaaatgttacactattaaaattggagttgaaaaattgacagaacaagcagagtaatccattgcatgaac |
20133918 |
T |
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| Q |
216 |
caacgacata |
225 |
Q |
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|||| ||||| |
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| T |
20133919 |
caacaacata |
20133928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 99 - 228
Target Start/End: Original strand, 20141303 - 20141432
Alignment:
| Q |
99 |
accctaattttgcagatattttccttatggcagggttccaaaaacgaagccatgtcacactattataattaggggtgaaaaactgaccatacaagcagag |
198 |
Q |
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|||||||||||| ||| |||||||| |||| |||||||||||||||||| | |||||||||||| ||| || |||||||||||||| |||| || || |
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| T |
20141303 |
accctaattttggagacattttcctcgtggctgggttccaaaaacgaagcaacgtcacactattaaaatcagaggtgaaaaactgactgaacaaacaaag |
20141402 |
T |
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| Q |
199 |
taatccattgtaggaaccaacgacatagag |
228 |
Q |
| |
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|||||||||| |||||||||| ||| |||| |
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| T |
20141403 |
taatccattgcaggaaccaacaacaaagag |
20141432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 208
Target Start/End: Original strand, 20374905 - 20375097
Alignment:
| Q |
16 |
atacaccaccttataagtgttggctgatttatcatagccaagcgttaaattaggatagaaatataggccgttgtgaatagagaaccctaattttgcagat |
115 |
Q |
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|||| ||||||||||||||| || ||| ||| |||| | || ||| |||||| ||| ||||| |||| ||| ||||||| | ||||||||| ||||| |
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| T |
20374905 |
atacgccaccttataagtgtcggttgagttaacataacaaaacgtcaaattatgatggaaatgtaggttgttatgaatagtatatcctaatttttcagat |
20375004 |
T |
|
| Q |
116 |
attttccttatggcagggttccaaaaacgaagccatgtcacactattataattaggggtgaaaaactgaccatacaagcagagtaatccattg |
208 |
Q |
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| T |
20375005 |
attgtcctcgtggctgggttccaaaagcgtatccacgtctcaatgtcgaaattagcggtgaaagaatggccaaacaagcagagtaatccattg |
20375097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 6865299 - 6865336
Alignment:
| Q |
113 |
gatattttccttatggcagggttccaaaaacgaagcca |
150 |
Q |
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|||| |||||||||||| |||||||||||||||||||| |
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| T |
6865299 |
gataatttccttatggctgggttccaaaaacgaagcca |
6865336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 22080438 - 22080390
Alignment:
| Q |
102 |
ctaattttgcagatattttccttatggcagggttccaaaaacgaagcca |
150 |
Q |
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|||||||| | |||||| ||||| |||| |||||||||||||||||||| |
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| T |
22080438 |
ctaatttttctgatattgtccttgtggctgggttccaaaaacgaagcca |
22080390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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