View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5225_low_20 (Length: 267)
Name: NF5225_low_20
Description: NF5225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5225_low_20 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 38608997 - 38608752
Alignment:
| Q |
1 |
catagttaatcctcattggcgctgatgccactcctccaccggaagtagtgatcagaagcggctgacctcgctccaatgtaggcagagcagttccaactgg |
100 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38608997 |
catagttaatcctcatcggcgctgatgtcactcctccgccggaagtagtgatcagaagcggctgacctcgctccaatgtaggcagagcagttccaactgg |
38608898 |
T |
|
| Q |
101 |
aagcttctcaagatcagcgatagacaagtaatgattcggtatgatatggaatcgcacattgctgatgtacgattgagaaccggagaatatagaaagatca |
200 |
Q |
| |
|
||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38608897 |
aagcttctcaagatcggcgatcgacaagtaataattcggtatgatatggaatcgcacattgctgatgtacgattgagaaccggagaatatagaaagatca |
38608798 |
T |
|
| Q |
201 |
tcaacggcgaaaatagtcatgttgttgagagttatgagctctgcgt |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38608797 |
tcaacggcgaaaatagtcatgttgttgagagttatgagctctgcgt |
38608752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 38793780 - 38793535
Alignment:
| Q |
1 |
catagttaatcctcattggcgctgatgccactcctccaccggaagtagtgatcagaagcggctgacctcgctccaatgtaggcagagcagttccaactgg |
100 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38793780 |
catagttaatcctcatcggcgctgatgtcactcctccgccggaagtagtgatcagaagcggctgacctcgctccaatgtaggcagagcagttccaactgg |
38793681 |
T |
|
| Q |
101 |
aagcttctcaagatcagcgatagacaagtaatgattcggtatgatatggaatcgcacattgctgatgtacgattgagaaccggagaatatagaaagatca |
200 |
Q |
| |
|
||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38793680 |
aagcttctcaagatcggcgatcgacaagtaataattcggtatgatatggaatcgcacattgctgatgtacgattgagaaccggagaatatagaaagatca |
38793581 |
T |
|
| Q |
201 |
tcaacggcgaaaatagtcatgttgttgagagttatgagctctgcgt |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38793580 |
tcaacggcgaaaatagtcatgttgttgagagttatgagctctgcgt |
38793535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 38121126 - 38121371
Alignment:
| Q |
1 |
catagttaatcctcattggcgctgatgccactcctccaccggaagtagtgatcagaagcggctgacctcgctccaatgtaggcagagcagttccaactgg |
100 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
38121126 |
catagttaatcctcatcggcgctgatgtcactcctccgccggaagtagtgatcagaagcggctgacctcgctccaatgtaggcagagcagttccaaccgg |
38121225 |
T |
|
| Q |
101 |
aagcttctcaagatcagcgatagacaagtaatgattcggtatgatatggaatcgcacattgctgatgtacgattgagaaccggagaatatagaaagatca |
200 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38121226 |
aagcttctcaagatcggcgattgacaagtaatgattcggtatgatatggaatcgcacattgctgatatacgattgagaaccggagaatatagaaagatca |
38121325 |
T |
|
| Q |
201 |
tcaacggcgaaaatagtcatgttgttgagagttatgagctctgcgt |
246 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38121326 |
tcaacagcgaaaatagtcatgttgttgagagttatgagctctgcgt |
38121371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 28730700 - 28730941
Alignment:
| Q |
1 |
catagttaatcctcattggcgctgatgccactcctccaccggaagtagtgatcagaagcggctgacctcgctccaatgtaggcagagcagttccaactgg |
100 |
Q |
| |
|
|||||||||||||||| || ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28730700 |
catagttaatcctcatcggtgctaatgtcactcctccaccggaagtagtgatcagaagcggctgacctcgctccaatgtaggcagagcagttccaactgg |
28730799 |
T |
|
| Q |
101 |
aagcttctcaagatcagcgatagacaagtaatgattcggtatgatatggaatcgcacattgctgatgtacgattgagaaccggagaatatagaaagatca |
200 |
Q |
| |
|
||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
28730800 |
aagcttctcaagatcggcgattgacaagtaacgattcggtatgatatggaatcgcacattgctgatatacgattgagaaccggagaatatagaaagatca |
28730899 |
T |
|
| Q |
201 |
tcaacggcgaaaatagtcatgttgttgagagttatgagctct |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28730900 |
tcaacggcgaaaatagtcatgttgttgagagttatgagctct |
28730941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University