View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5225_low_24 (Length: 241)
Name: NF5225_low_24
Description: NF5225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5225_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 29274133 - 29274354
Alignment:
| Q |
1 |
aattaatggaagataggaggattgtttgagaataaagaatatggatgagtaggtgtatgttattgttggcctcagtatatataaaaattgcaagtgtgaa |
100 |
Q |
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| T |
29274133 |
aattaatggaagatag-aggattgtttgagaatatagaatatggatgagtaggtgtatgttattgttggcctcagtatatatataaattgcaagtgtgaa |
29274231 |
T |
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| Q |
101 |
cttcgttaccttttctcctaagtgtgacttgtgtcgagtctattaaaatataataaaaaagaagccaattttaacaactctctatcacacattaaggttt |
200 |
Q |
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||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29274232 |
cttcgttaccttttctcctccgtgtgacttgtgtgaagtctgttaaaatataataaaaaagaagccaattttaacaactctctatcacacattaaggttt |
29274331 |
T |
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| Q |
201 |
tgaatcgcctcccaacagaggtg |
223 |
Q |
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|||||||||| |||||| ||||| |
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| T |
29274332 |
tgaatcgccttccaacataggtg |
29274354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 268708 - 268923
Alignment:
| Q |
1 |
aattaatggaagataggaggattgtttgagaataaagaatatggatgagtaggtgtatgttattgttggcctc---------------------agtata |
79 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
268708 |
aattaatggaagataggaggattgtttgagaatatagaatatggatgagtaggtgtatactattgttggcctctgtaatataaaactatgtaacagtata |
268807 |
T |
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| Q |
80 |
tataaaaattgcaag-tgtgaacttcgttaccttttctcctaagtgtgacttgtgtcgagtctattaaaatataataaaaaagaagccaattttaacaac |
178 |
Q |
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| T |
268808 |
tataaaaattgcaatctatgaacttcgttaccttttcgcctccgtgtgacttgtgtcgagtctgttaaaatataataaaaaa-aaaccaattttaacaac |
268906 |
T |
|
| Q |
179 |
tctctatcacacattaa |
195 |
Q |
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||||| ||||||||||| |
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| T |
268907 |
tctctgtcacacattaa |
268923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 26646296 - 26646116
Alignment:
| Q |
1 |
aattaatggaagataggaggat--tgtttgagaataaagaatatggatgagtaggtgtatgttattgttggcctcagtatatataaaaattgcaagtgtg |
98 |
Q |
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|||||||||||||||||||||| ||||| |||||| ||||||||||||||| |||||||||||||||||||||| ||| |||||| | | || | | |
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| T |
26646296 |
aattaatggaagataggaggatattgtttaagaatacagaatatggatgagttggtgtatgttattgttggcctctgta-atataacact---aaat-ag |
26646202 |
T |
|
| Q |
99 |
aacttcgttacc-ttttctcctaagtgtgacttgtgtcgagtctattaaaatataa-taaaaaagaagccaattttaacaactctc |
182 |
Q |
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| T |
26646201 |
aactttcttaccattttctcctccgcgtggcttgtgtccagtctgttaaaatataactaaataacaagccaattttaacaactctc |
26646116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 26752264 - 26752084
Alignment:
| Q |
1 |
aattaatggaagataggaggat--tgtttgagaataaagaatatggatgagtaggtgtatgttattgttggcctcagtatatataaaaattgcaagtgtg |
98 |
Q |
| |
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|||||||||||||||||||||| ||||| |||||| ||||||||||||||| |||||||||||||||||||||| ||| |||||| | | || | | |
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| T |
26752264 |
aattaatggaagataggaggatattgtttaagaatacagaatatggatgagttggtgtatgttattgttggcctctgta-atataacact---aaat-ag |
26752170 |
T |
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| Q |
99 |
aacttcgttacc-ttttctcctaagtgtgacttgtgtcgagtctattaaaatataa-taaaaaagaagccaattttaacaactctc |
182 |
Q |
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||||| ||||| ||||||||| | ||| |||||||| ||||| ||||||||||| |||| || ||||||||||||||||||||| |
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| T |
26752169 |
aactttcttaccattttctcctccgcgtggcttgtgtccagtctgttaaaatataactaaataacaagccaattttaacaactctc |
26752084 |
T |
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