View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5225_low_3 (Length: 677)
Name: NF5225_low_3
Description: NF5225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5225_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 20 - 402
Target Start/End: Complemental strand, 44495583 - 44495207
Alignment:
| Q |
20 |
gatatgaatgcatctggtttcaggaaaggatcgtgaagttttctttgaaagtgattttaagcaaaatgaatgagattgatggtatggtgtatgggttata |
119 |
Q |
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| T |
44495583 |
gatatgaatgcatctggtttcaggaaaggatcgtgaagttttctttgaaagtgattttaagcaaaatgaatgagattgatggtatggtgtatgggttata |
44495484 |
T |
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| Q |
120 |
ttttatcactcactctgacaatggaagaataagaaggttcacgttgaaggtgttttgctcagcagtatgtcaactaatatcaaataaaaggaatatggaa |
219 |
Q |
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| T |
44495483 |
ttttatcactc----tggcaatggaagaataaggaggctcacgttgaaggtgttttgctcagcagtatgtcaactaatatcaaataaaaggaatatggaa |
44495388 |
T |
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| Q |
220 |
tgagcagtgctatatgtcgcgaccaaaggttcacgaattgttaaatctttatatttcttcacactaacagt----atcagcggtgctactctgagtgtat |
315 |
Q |
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| T |
44495387 |
tgagcagtgctatatgtcgcaaccaaaggttctcgaattgttaaatctttatatttcttcacactaacagtatcaatcagcggtgctactctgtct---- |
44495292 |
T |
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| Q |
316 |
agctaactaac-ttcaccacctctttcctcatacaacttaaccaattttttattttctccttcatgattttatctaaaacacttatat |
402 |
Q |
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| T |
44495291 |
---caactaacatggtgtgattctttcctcatacaacttaaccaattttttattttctccttcatgattttatctaaaacacttatat |
44495207 |
T |
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