View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5225_low_4 (Length: 600)
Name: NF5225_low_4
Description: NF5225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5225_low_4 |
 | |
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| [»] chr8 (8 HSPs) |
| |
|
| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 495; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 14 - 600
Target Start/End: Complemental strand, 38609485 - 38608899
Alignment:
| Q |
14 |
gcagcacagagccacaaactaaacaacaatgtgagttaactacaaattcagagtttcactttagtatatgaacaacagtgtaactgtaaacttattaact |
113 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
38609485 |
gcagcacaaagccacaaactaaacaacaatgcgagttaactacaaattcagagtttcactttagtacatgaacaacagtgtaactgtaaacttattaact |
38609386 |
T |
|
| Q |
114 |
acaaatttaatagagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatcgaagcatcgcactcacaggccatggtgatcttcaatct |
213 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38609385 |
acaaatttcatagagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatcgaagcatcgcactcacaggccatggtgatcttcaatct |
38609286 |
T |
|
| Q |
214 |
caaccattggcttgacctcaggcatgggagacacacctgctgtagtagtgactccagcagcacaaccaccacgtccatcaagagcagagcaggtttcttc |
313 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38609285 |
caaccattggcttgacctgaggcatgggagacacacctgctgtagtagtgacaccagcagcacaaccaccacgtccatcaagagcagagcaggtttcttc |
38609186 |
T |
|
| Q |
314 |
cgtcgcctgacctggagaatctaataaagtagatgatccggctctaacacctgctccttccgacgctccttcacctcctaatatagtatcataagcagcc |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38609185 |
cgtcgcctgacctggagaatctaataaagttgatgctccggctccaacacctgctccttccgacgctccttcacctcctaatatagtatcataagcagcc |
38609086 |
T |
|
| Q |
414 |
gcaataggattgatatgcggaaaaggcaaatacacactgtgcacaactatcttcacattgcggatgacgtccgcaaccttaactctcacctagttaatcc |
513 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
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|
| T |
38609085 |
gcaataggattgatatgcggaaaaggcaaatacacactgtgcacaactatcttcacattgcggatgacgtcagcaaccttaactctcacatagttaatcc |
38608986 |
T |
|
| Q |
514 |
tcattggcgctgctgccactcctcccccggatgtagtgaccagaatcggctgacctccctccaatttatgcagatcagttcccactg |
600 |
Q |
| |
|
|||| ||||||| || ||||||||| ||||| ||||||| ||||| ||||||||||| ||||||| || ||||| ||||||| |||| |
|
|
| T |
38608985 |
tcatcggcgctgatgtcactcctccgccggaagtagtgatcagaagcggctgacctcgctccaatgtaggcagagcagttccaactg |
38608899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 14 - 600
Target Start/End: Complemental strand, 38794268 - 38793682
Alignment:
| Q |
14 |
gcagcacagagccacaaactaaacaacaatgtgagttaactacaaattcagagtttcactttagtatatgaacaacagtgtaactgtaaacttattaact |
113 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38794268 |
gcagcacaaagccacaaactaaacaacaatgcgagttaactacaaattcagagtttcactttagtacatgaacaacagtgtaactgtaaacttattaact |
38794169 |
T |
|
| Q |
114 |
acaaatttaatagagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatcgaagcatcgcactcacaggccatggtgatcttcaatct |
213 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38794168 |
acaaatttcatagagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatcgaagcatcgcactcacaggccatggtgatcttcaatct |
38794069 |
T |
|
| Q |
214 |
caaccattggcttgacctcaggcatgggagacacacctgctgtagtagtgactccagcagcacaaccaccacgtccatcaagagcagagcaggtttcttc |
313 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38794068 |
caaccattggcttgacctgaggcatgggagacacacctgctgtagtagtgacaccagcagcacaaccaccacgtccatcaagagcagagcaggtttcttc |
38793969 |
T |
|
| Q |
314 |
cgtcgcctgacctggagaatctaataaagtagatgatccggctctaacacctgctccttccgacgctccttcacctcctaatatagtatcataagcagcc |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38793968 |
cgtcgcctgacctggagaatctaataaagttgatgctccggctccaacacctgctccttccgacgctccttcacctcctaatatagtatcataagcagcc |
38793869 |
T |
|
| Q |
414 |
gcaataggattgatatgcggaaaaggcaaatacacactgtgcacaactatcttcacattgcggatgacgtccgcaaccttaactctcacctagttaatcc |
513 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
38793868 |
gcaataggattgatatgcggaaaaggcaaatacacactgtgcacaactatcttcacattgcggatgacgtcagcaaccttaactctcacatagttaatcc |
38793769 |
T |
|
| Q |
514 |
tcattggcgctgctgccactcctcccccggatgtagtgaccagaatcggctgacctccctccaatttatgcagatcagttcccactg |
600 |
Q |
| |
|
|||| ||||||| || ||||||||| ||||| ||||||| ||||| ||||||||||| ||||||| || ||||| ||||||| |||| |
|
|
| T |
38793768 |
tcatcggcgctgatgtcactcctccgccggaagtagtgatcagaagcggctgacctcgctccaatgtaggcagagcagttccaactg |
38793682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 98 - 595
Target Start/End: Original strand, 38120719 - 38121219
Alignment:
| Q |
98 |
tgtaaacttattaactacaaatttaatagagattcacttcagcagagaaagaactaaaccgcaatcttcat---catcatcgaagcatcgcactcacagg |
194 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
38120719 |
tgtaaacttattaactacaaatttcatagagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatcatcgaagcatcgcactcacagg |
38120818 |
T |
|
| Q |
195 |
ccatggtgatcttcaatctcaaccattggcttgacctcaggcatgggagacacacctgctgtagtagtgactccagcagcacaaccaccacgtccatcaa |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
38120819 |
ccatggtgatcttcaatctcaaccattggcttgacctgaggcatgggagacacacctgctgcagtagtgacatcagcagcacaaccaccacgtccatcag |
38120918 |
T |
|
| Q |
295 |
gagcagagcaggtttcttccgtcgcctgacctggagaatctaataaagtagatgatccggctctaacacctgctccttccgacgctccttcacctcctaa |
394 |
Q |
| |
|
|||||||||||||||||||||| |||||||| | ||||||| ||| ||||| | || ||||| ||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
38120919 |
gagcagagcaggtttcttccgtggcctgaccagcagaatctgatacagtagcagctctggctccgacacccgctccttccgatgctccttcacctcctaa |
38121018 |
T |
|
| Q |
395 |
tatagtatcataagcagccgcaataggattgatatgcggaaaaggcaaatacacactgtgcacaactatcttcacattgcggatgacgtccgcaacctta |
494 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
38121019 |
gatagtatcataagcagccgcaataggattgatatgcggaaaaggcaaatacacgctgtgcacaacaatcttcacattgcggatgacgtcagcaacctta |
38121118 |
T |
|
| Q |
495 |
actctcacctagttaatcctcattggcgctgctgccactcctcccccggatgtagtgaccagaatcggctgacctccctccaatttatgcagatcagttc |
594 |
Q |
| |
|
|||||||| |||||||||||||| ||||||| || ||||||||| ||||| ||||||| ||||| ||||||||||| ||||||| || ||||| |||||| |
|
|
| T |
38121119 |
actctcacatagttaatcctcatcggcgctgatgtcactcctccgccggaagtagtgatcagaagcggctgacctcgctccaatgtaggcagagcagttc |
38121218 |
T |
|
| Q |
595 |
c |
595 |
Q |
| |
|
| |
|
|
| T |
38121219 |
c |
38121219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 143 - 253
Target Start/End: Complemental strand, 34592957 - 34592844
Alignment:
| Q |
143 |
agaaagaactaaaccgcaatcttcatcatcatc---gaagcatcgcactcacaggccatggtgatcttcaatctcaaccattggcttgacctcaggcatg |
239 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||| | |
|
|
| T |
34592957 |
agaaagaagtaaaccgcaatcttcatcatcatcattgaagcatcacactcacaggccatggtgatcttcaatctcaaccattggcctgacccgaggcacg |
34592858 |
T |
|
| Q |
240 |
ggagacacacctgc |
253 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
34592857 |
ggagacacacctgc |
34592844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 34593031 - 34592970
Alignment:
| Q |
14 |
gcagcacagagccacaaactaaacaacaatgtgagttaactacaaattcagagtttcacttt |
75 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
34593031 |
gcagcacaaagccacaaactaaacaacaatgcaagttaactacaaattcagagtttcacttt |
34592970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 38287498 - 38287450
Alignment:
| Q |
109 |
taactacaaatttaatagagattcacttcagcagagaaagaactaaacc |
157 |
Q |
| |
|
||||||||| ||| |||||| |||||||||||||| |||||| |||||| |
|
|
| T |
38287498 |
taactacaagtttcatagagtttcacttcagcagaaaaagaagtaaacc |
38287450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 38609538 - 38609502
Alignment:
| Q |
38 |
aacaatgtgagttaactacaaattcagagtttcactt |
74 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
38609538 |
aacaatgtgaattaactacaaattcaaagtttcactt |
38609502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 38794321 - 38794285
Alignment:
| Q |
38 |
aacaatgtgagttaactacaaattcagagtttcactt |
74 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
38794321 |
aacaatgtgaattaactacaaattcaaagtttcactt |
38794285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 98 - 600
Target Start/End: Original strand, 28730296 - 28730798
Alignment:
| Q |
98 |
tgtaaacttattaactacaaatttaatagagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatcgaagcatcgcactcacaggcca |
197 |
Q |
| |
|
|||||||||||||||||||||||| ||| || || |||||||||||||||||| |||| |||||||||| |||| ||| || |||| ||||||||||||| |
|
|
| T |
28730296 |
tgtaaacttattaactacaaatttcatatagttttacttcagcagagaaagaagtaaatcgcaatcttcgtcatgatcaaaccatcacactcacaggcca |
28730395 |
T |
|
| Q |
198 |
tggtgatcttcaatctcaaccattggcttgacctcaggcatgggagacacacctgctgtagtagtgactccagcagcacaaccaccacgtccatcaagag |
297 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||| |||||||||||||||||||| || || |||||| |||||||||| |||||||| |||||||||| |
|
|
| T |
28730396 |
tggtgatcttcaatctcaaacattggcctgacctgaggcatgggagacacacctgttgcagcagtgacatcagcagcacagccaccacgcccatcaagag |
28730495 |
T |
|
| Q |
298 |
cagagcaggtttcttccgtcgcctgacctggagaatctaataaagtagatgatccggctctaacacctgctccttccgacgctccttcacctcctaatat |
397 |
Q |
| |
|
|||||||||||||||| ||||||||||| | ||||||| ||| ||||| | || ||||| ||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
28730496 |
cagagcaggtttcttcagtcgcctgaccagcagaatctgatacagtagcagctctggctccgacacctgctccttccgatgctccttcacctcctaagat |
28730595 |
T |
|
| Q |
398 |
agtatcataagcagccgcaataggattgatatgcggaaaaggcaaatacacactgtgcacaactatcttcacattgcggatgacgtccgcaaccttaact |
497 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||| || |
|
|
| T |
28730596 |
agtatcataagcatccgcaataggattgatatgcggaaaaggcaaatacacactatgcacaactatcttcacattacggatgacgtcagcaaccttcacc |
28730695 |
T |
|
| Q |
498 |
ctcacctagttaatcctcattggcgctgctgccactcctcccccggatgtagtgaccagaatcggctgacctccctccaatttatgcagatcagttccca |
597 |
Q |
| |
|
|| || |||||||||||||| || ||| || ||||||||| ||||| ||||||| ||||| ||||||||||| ||||||| || ||||| ||||||| | |
|
|
| T |
28730696 |
ctaacatagttaatcctcatcggtgctaatgtcactcctccaccggaagtagtgatcagaagcggctgacctcgctccaatgtaggcagagcagttccaa |
28730795 |
T |
|
| Q |
598 |
ctg |
600 |
Q |
| |
|
||| |
|
|
| T |
28730796 |
ctg |
28730798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 16 - 211
Target Start/End: Complemental strand, 33078657 - 33078483
Alignment:
| Q |
16 |
agcacagagccacaaactaaacaacaatgtgagttaactacaaattcagagtttcactttagtatatgaacaacagtgtaactgtaaacttattaactac |
115 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||| |
|
|
| T |
33078657 |
agcacaaagccacaaactaaacaacaatgcgagttaactacaaattcagagtttcacttttgtacatgaacaacagt------gtaaacttattaactac |
33078564 |
T |
|
| Q |
116 |
aaatttaatagagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatc---gaagcatcgcactcacaggccatggtgatcttcaat |
211 |
Q |
| |
|
|||||| ||||||||||| |||||||| ||||||||||||||| ||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
33078563 |
aaattt------------------cagagaaagaagtaaaccgcgatcttcatcatcatcattgaagcatcgcagtcacagcccatggtgatcttcaat |
33078483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 419 - 495
Target Start/End: Original strand, 18224363 - 18224439
Alignment:
| Q |
419 |
aggattgatatgcggaaaaggcaaatacacactgtgcacaactatcttcacattgcggatgacgtccgcaaccttaa |
495 |
Q |
| |
|
|||||| ||||| ||||| ||||| |||||||||||||| || ||||| || |||||||||||| ||| ||||||| |
|
|
| T |
18224363 |
aggattaatatgtggaaatggcaagtacacactgtgcacgacgatcttgacgttgcggatgacgaccgacaccttaa |
18224439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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