View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5225_low_6 (Length: 445)
Name: NF5225_low_6
Description: NF5225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5225_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Complemental strand, 14035194 - 14034752
Alignment:
| Q |
1 |
ctttggaaaggcgaatataatttcccctaaatannnnnnn--aaagataatttcccctaaatataatgatttggtttcgatttggtgcaagttaaataac |
98 |
Q |
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|||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14035194 |
ctttggaaaggcgaatataatttcccgtaaatattttttttgaaagataatttcccctaaatataatgatttggtttcgatttggtgcaagttaaataac |
14035095 |
T |
|
| Q |
99 |
ttctatcttttgatgatgtaccgtcatgtatttgacatctttaaa-taatgaaatgacttctatctgaagacatgtggaccctttatcttcttttttaag |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
14035094 |
ttctatcttttgatgatgtaccgtcatgtatttgacatcttttgagtaatgaaatgacttctatctgaagacatgtggaccctttatcttatattttaag |
14034995 |
T |
|
| Q |
198 |
taaatcgtcttgttcaactcagatttaccacactttgcgtttagacatgggtcgagcccttctatgagttcaagtatgttccatatgtttcaaagggttc |
297 |
Q |
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||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |
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| T |
14034994 |
taaatcgtcttcttcgactcagatttaccacactttgcgtttagacatgggtcgagtccttctatgaattcaagtatgttccatatgtttcaaagggttc |
14034895 |
T |
|
| Q |
298 |
cttgcacgaggttttatggatttgtaggactcgtggtactcgggattgcatgtttgcgtctacacttggaagttgtatggttcatagcacaaggctcaca |
397 |
Q |
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|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
14034894 |
cttgcatgaggttttatggatttgtaggactcgtggtacccgggattgcatgtttgcgtctacacttcgaagttgtatggttcatagcagaaggctcaca |
14034795 |
T |
|
| Q |
398 |
tggaactatgcactgaccaaatatgatctctagaataatctac |
440 |
Q |
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| T |
14034794 |
tggaactatgcactgaccaaatatgatctctagcataagctac |
14034752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 14036450 - 14036414
Alignment:
| Q |
45 |
ataatttcccctaaatataatgatttggtttcgattt |
81 |
Q |
| |
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|||||||||||||||||||||| | |||||||||||| |
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| T |
14036450 |
ataatttcccctaaatataatggtgtggtttcgattt |
14036414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 140
Target Start/End: Complemental strand, 40287025 - 40286994
Alignment:
| Q |
109 |
tgatgatgtaccgtcatgtatttgacatcttt |
140 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
40287025 |
tgatgatgtaccgtcatgtatttgacatcttt |
40286994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 140
Target Start/End: Complemental strand, 51080680 - 51080649
Alignment:
| Q |
109 |
tgatgatgtaccgtcatgtatttgacatcttt |
140 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
51080680 |
tgatgatgtaccgtcatgtatttgacatcttt |
51080649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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