View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5226-Insertion-1 (Length: 910)
Name: NF5226-Insertion-1
Description: NF5226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5226-Insertion-1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 697; Significance: 0; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 697; E-Value: 0
Query Start/End: Original strand, 8 - 760
Target Start/End: Original strand, 5982983 - 5983734
Alignment:
| Q |
8 |
agtcattggtgccggaatcatgggcttgcctgcttgtgtcaaaaagttggggatggtacctggtcttcttgccataatcctcacagcattactaacagag |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5982983 |
agtcattggtgccggaatcatgggcttgcctgcttgtgtcagaaagttggggatggtacctggtcttcttgccataatcctcacagcattactaacagaa |
5983082 |
T |
|
| Q |
108 |
aagtcaattgagtttgtgatcaggttttcgaaggcagggaatctttcttcctatggaaatcttatgggggatgcctttgggaaatacggaaaaatatcgg |
207 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5983083 |
aagtcaattgagtttgtgattaggttttcgagggcagggaatctttcttcctatggaagtcttatgggggatgcctttgggaaatacggaaaaatatcgg |
5983182 |
T |
|
| Q |
208 |
tccagatatgtattgtaatcggcaacactggcatgctgattgtttacatgatcattgttggtgagaccatattcttaattctagtgttttaaaattatat |
307 |
Q |
| |
|
| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5983183 |
tggagatatgtattgtaatcggtaacactggtatgctgattgtttacatgatcattgttggtgagaccatattcttaattctagtgttttaaaattatat |
5983282 |
T |
|
| Q |
308 |
agatgtaatccgatttggttttgtgtgattcagtttcgttttgttcgtatttgtaggcgatatcatttcaggaacaacttcaagtggaattcaccatcct |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5983283 |
agatgtaatccgatttggttttgtgtgattcagtttcgttttgttcgtatttgtaggcgatgtcatttcaggaacaacttcaagtggaattcaccatcct |
5983382 |
T |
|
| Q |
408 |
ggtatacttgaaggatggtttggtgtccattggtggaccgggcgtacatttgttcttgtttttgcaacacttgctgtgtttgcacctttggtcagcttta |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5983383 |
ggtatacttgaaggatggtttggtgtccattggtggaccgggcgtacatttgttcttgtttttgcaacacttgctgtgtttgcacctttggtcagcttta |
5983482 |
T |
|
| Q |
508 |
agcggattggttagtgattttgcttttcttgtattaattggttgaaaatcgaaacatgtagttaggagtcacttattaaacaaattattactgaaacggc |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5983483 |
agcggattggttagtgattttgcttttcttgtattaattggttgaaaatcgaaacatgtagttaggagtcacttattaaacaaattattactgaaacggc |
5983582 |
T |
|
| Q |
608 |
catagatgtgacgacaatgttaggaagatgactcaaacgatggacggtaatggtatggatgaaagtttccatttcattgtttgtatattgaacaaattgg |
707 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5983583 |
catagatttgacgacaatgttaggaagatgactcaaacgatggacggtaatggtatggatgaaagtttccatttcattgtttgtatattgaacaaattgg |
5983682 |
T |
|
| Q |
708 |
tctatctatgaaaatgttttgttgctaaagttgtttggtttgtaaccaaatga |
760 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
5983683 |
tctatctatgaaaatgttttgttgct-aagttgtttggtttgttaccaaatga |
5983734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 162; E-Value: 6e-86
Query Start/End: Original strand, 12 - 692
Target Start/End: Original strand, 5967073 - 5967732
Alignment:
| Q |
12 |
attggtgccggaatcatgggcttgcctgcttgtgtcaaaaagttggggatggtacctggtcttcttgccataatcctcacagcattactaacagagaagt |
111 |
Q |
| |
|
|||||||| ||||| ||||| |||||||| ||||| |||||||| |||||||| ||||||||| ||| |||| |||| ||||| ||| | |||||||||| |
|
|
| T |
5967073 |
attggtgctggaattatgggattgcctgcatgtgtgaaaaagttagggatggtgcctggtcttattgtcatagtcctaacagctttattgacagagaagt |
5967172 |
T |
|
| Q |
112 |
caattgagtttgtgatcaggttttcgaaggcagggaatctttcttcctatggaaatcttatgggggatgcctttgggaaatacggaaaaatatcggtcca |
211 |
Q |
| |
|
||||||| || | ||||||||||| | ||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||| ||| | | |
|
|
| T |
5967173 |
caattgatttcataatcaggttttctagggcagggaaactttcttcctatggaaatcttatgggagatgcctatgggaaatacggaaaagcgtcgttgga |
5967272 |
T |
|
| Q |
212 |
gatatgtattgtaatcggcaacactggcatgctgattgtttacatgatcattgttggtgagaccatattcttaattctagtgttttaaaattat--atag |
309 |
Q |
| |
|
||||||| || ||| || | || | ||||| | |||||||||||| ||||||||||||||||||||| ||||| ||||| |||| ||| |
|
|
| T |
5967273 |
gatatgtgttttaactaccatc---ggtagtctgatcatgtacatgatcattattggtgagaccatattcttaagtctagacttttactgttatcattag |
5967369 |
T |
|
| Q |
310 |
atgtaatccgatttggttttgtgtgattcagtttcgt-tttgttcgtatttgtaggcgatatcatttcaggaacaacttcaagtggaattcaccatcctg |
408 |
Q |
| |
|
| | |||| |||| | ||||| ||| || ||||||| ||| |||||| ||| | ||||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
5967370 |
agaaga----atttaaggttgtataattcaattttgtttttgttcatat-tgtaggtgatgtgatttctggaacaacttcaagtggaattcaccatgctg |
5967464 |
T |
|
| Q |
409 |
gtatacttgaaggatggtttggtgtccattggtggaccgggcgtacatttgttcttgtttttgcaacacttgctgtgtttgcacctttggtcagctttaa |
508 |
Q |
| |
|
|| | |||||||||||||||||||||||||||||||||||||||||||||||| || || |||||| ||| |||| |||||||||||||||||||||| |
|
|
| T |
5967465 |
gtgtccttgaaggatggtttggtgtccattggtggaccgggcgtacatttgttattaccttcgcaacatttgttgtggttgcacctttggtcagctttaa |
5967564 |
T |
|
| Q |
509 |
gcggattggttagtgattttgcttttcttgtattaattgg-ttgaaaatcgaaacatgtagttaggagtcacttattaaacaaattattactgaaacggc |
607 |
Q |
| |
|
|||||||||| |||||| || ||||||||||||||||||| ||| | || ||||||| ||||| | |||| |||| |||| ||| |
|
|
| T |
5967565 |
gcggattggtgagtgatatttcttttcttgtattaattggtttgcatatagaaacatatagtt--gtgtca---------------tttaccgaaatggc |
5967647 |
T |
|
| Q |
608 |
catagatgtgacgacaatgttaggaagatgactcaaacgatggacggtaatggtatggatgaaagtttccatttcattgtttgta |
692 |
Q |
| |
|
|||||| || ||| ||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
5967648 |
tatagattagatgaccatgttaggaagatgactcaaatgcgggacggtaattgtatggatgaaagtttccatttcatcgtttgta |
5967732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 12 - 291
Target Start/End: Original strand, 5961563 - 5961842
Alignment:
| Q |
12 |
attggtgccggaatcatgggcttgcctgcttgtgtcaaaaagttggggatggtacctggtcttcttgccataatcctcacagcattactaacagagaagt |
111 |
Q |
| |
|
|||||||| || |||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||| | ||||||||| |
|
|
| T |
5961563 |
attggtgctgggatcatgggcttgcccgcttgcgtcaaaaagttgggaatggtacctggtcttcttgccataatcctaacagcattattgacagagaagg |
5961662 |
T |
|
| Q |
112 |
caattgagtttgtgatcaggttttcgaaggcagggaatctttcttcctatggaaatcttatgggggatgcctttgggaaatacggaaaaatatcggtcca |
211 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||| | ||| | |
|
|
| T |
5961663 |
caattgagttcatgatcaggttttcgagagcagggaatctttcttcctatggaagtcttatgggagatacctttgggaaatacggaaaagcactggtaga |
5961762 |
T |
|
| Q |
212 |
gatatgtattgtaatcggcaacactggcatgctgattgtttacatgatcattgttggtgagaccatattcttaattctag |
291 |
Q |
| |
|
||||||| || ||||| ||| ||| || ||||||||||||||||||||| ||||||||||| ||||||||| ||||| |
|
|
| T |
5961763 |
gatatgtgttataatcactaacgttggtattctgattgtttacatgatcattattggtgagaccttattcttaagtctag |
5961842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 333 - 523
Target Start/End: Original strand, 5961944 - 5962133
Alignment:
| Q |
333 |
tgattcagtttcgttttgttcgtatttgtaggcgatatcatttcaggaacaacttcaagtggaattcaccatcctggtatacttgaaggatggtttggtg |
432 |
Q |
| |
|
||||||||||| |||||||| ||||| ||||| ||| | ||||| ||||| |||||| |||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5961944 |
tgattcagtttggttttgtttgtatt-gtaggtgatgtgatttctggaacgacttcaggtggaattcaccatcctggtatccttgaaggatggtttggtg |
5962042 |
T |
|
| Q |
433 |
tccattggtggaccgggcgtacatttgttcttgtttttgcaacacttgctgtgtttgcacctttggtcagctttaagcggattggttagtg |
523 |
Q |
| |
|
||||||||||||| ||||| ||||||||| |||||||| |||||||||||||||||| ||||||||||||||| ||||| |||||| |||| |
|
|
| T |
5962043 |
tccattggtggactgggcgcacatttgttgttgtttttacaacacttgctgtgtttggacctttggtcagcttaaagcgaattggtgagtg |
5962133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 345 - 543
Target Start/End: Original strand, 5933379 - 5933577
Alignment:
| Q |
345 |
gttttgttcgtatttgtaggcgatatcatttcaggaacaacttcaagtggaattcaccatcctggtatacttgaaggatggtttggtgtccattggtgga |
444 |
Q |
| |
|
|||||||||||||| ||||| ||| | |||| ||||||||||||||||||||||||||| ||||||| || |||||||||||||| ||||||||||||| |
|
|
| T |
5933379 |
gttttgttcgtatt-gtaggtgatgtggtttctggaacaacttcaagtggaattcaccattctggtatcctcgaaggatggtttggagtccattggtgga |
5933477 |
T |
|
| Q |
445 |
ccgggcgtacatttgttcttgtttttgcaacacttgctgtgtttgcacctttggtcagctttaagcggattggttagtgattttgc-ttttcttgtatta |
543 |
Q |
| |
|
| |||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||| |||||| ||||||| ||| ||||||||||||| |
|
|
| T |
5933478 |
ctgggcgtacatttgttcttacctttacaacacttgctgtgtttgcacctctggtcagctttaagcaaattggtgagtgattgtgctttttcttgtatta |
5933577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 15 - 200
Target Start/End: Original strand, 5932680 - 5932865
Alignment:
| Q |
15 |
ggtgccggaatcatgggcttgcctgcttgtgtcaaaaagttggggatggtacctggtcttcttgccataatcctcacagcattactaacagagaagtcaa |
114 |
Q |
| |
|
||||| || ||||||||||||||||||||||| || |||||||| ||||| ||||||||| |||| ||| |||| |||||||| | |||||||||||| |
|
|
| T |
5932680 |
ggtgctgggatcatgggcttgcctgcttgtgtgaagaagttgggcatggtgcctggtcttattgctatagtcctaacagcatttttgacagagaagtcag |
5932779 |
T |
|
| Q |
115 |
ttgagtttgtgatcaggttttcgaaggcagggaatctttcttcctatggaaatcttatgggggatgcctttgggaaatacggaaaa |
200 |
Q |
| |
|
|||| || || |||||||||| | |||||||||||||||||| ||||||| ||||||||||||||||||||||| ||| |||||| |
|
|
| T |
5932780 |
ttgaattcatgctcaggttttcaagggcagggaatctttcttcatatggaagtcttatgggggatgcctttgggagatatggaaaa |
5932865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 763 - 895
Target Start/End: Original strand, 5984012 - 5984138
Alignment:
| Q |
763 |
ttattgcagattcattggagattcacgtctgcattgtcagttggattagcagttgttttccttattcatagccggtgggggatctcaactatcaagatta |
862 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
5984012 |
ttattgcagattcattg-agattcacgtctgcattgtcagttggattagcagttgttttcctta-tcatagccg--tggggatctcaactatcaagatta |
5984107 |
T |
|
| Q |
863 |
ttagcgagggcgattgagatttcccagactctt |
895 |
Q |
| |
|
|||||| |||| ||||||| ||||||||||||| |
|
|
| T |
5984108 |
ttagcgggggc-attgaga-ttcccagactctt |
5984138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 595 - 692
Target Start/End: Complemental strand, 8716461 - 8716364
Alignment:
| Q |
595 |
ttactgaaacggccatagatgtgacgacaatgttaggaagatgactcaaacgatggacggtaatggtatggatgaaagtttccatttcattgtttgta |
692 |
Q |
| |
|
|||| |||||| | |||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
8716461 |
ttaccgaaacgtctatagattagacgacaatgttaggaagatgactcaaacgcgggacggtaattttatggatgaaagtttccatttcatagtttgta |
8716364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 761 - 868
Target Start/End: Original strand, 5967948 - 5968051
Alignment:
| Q |
761 |
gattattgcagattcattggagattcacgtctgcattgtcagttggattagcagttgttttccttattcatagccggtgggggatctcaactatcaagat |
860 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||| |||| |||| |||||||||| ||||||||| |
|
|
| T |
5967948 |
gattattgcagattcattg-agattcacgtctgcattgtcaattggattagcagttcttttcctta-tcattgccg--tagggatctcaattatcaagat |
5968043 |
T |
|
| Q |
861 |
tattagcg |
868 |
Q |
| |
|
|||||||| |
|
|
| T |
5968044 |
tattagcg |
5968051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 761 - 868
Target Start/End: Complemental strand, 8716144 - 8716041
Alignment:
| Q |
761 |
gattattgcagattcattggagattcacgtctgcattgtcagttggattagcagttgttttccttattcatagccggtgggggatctcaactatcaagat |
860 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||| |||| |||| |||||||||| ||||||||| |
|
|
| T |
8716144 |
gattattgcagattcattg-agattcacgtctgcattgtcaattggattagcagttcttttcctta-tcattgccg--tagggatctcaattatcaagat |
8716049 |
T |
|
| Q |
861 |
tattagcg |
868 |
Q |
| |
|
|||||||| |
|
|
| T |
8716048 |
tattagcg |
8716041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 766 - 866
Target Start/End: Original strand, 5934342 - 5934438
Alignment:
| Q |
766 |
ttgcagattcattggagattcacgtctgcattgtcagttggattagcagttgttttccttattcatagccggtgggggatctcaactatcaagattatta |
865 |
Q |
| |
|
|||||||||| ||| |||||||| |||||||| |||||||||||||||||||||||||||| |||| |||| |||||||||| |||||||||||||| |
|
|
| T |
5934342 |
ttgcagattctttg-agattcacatctgcattatcagttggattagcagttgttttcctta-tcattgccg--tagggatctcaattatcaagattatta |
5934437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 766 - 866
Target Start/End: Original strand, 5962934 - 5963030
Alignment:
| Q |
766 |
ttgcagattcattggagattcacgtctgcattgtcagttggattagcagttgttttccttattcatagccggtgggggatctcaactatcaagattatta |
865 |
Q |
| |
|
|||||||||||||| |||||||| |||||||| ||| |||||||||||||| |||| | | |||| || | |||||||||||| |||||||||||||| |
|
|
| T |
5962934 |
ttgcagattcattg-agattcacatctgcattatcaattggattagcagttctttttc-tcgtcattgctg--gggggatctcaattatcaagattatta |
5963029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 379 - 469
Target Start/End: Original strand, 11044091 - 11044181
Alignment:
| Q |
379 |
gaacaacttcaagtggaattcaccatcctggtatacttgaaggatggtttggtgtccattggtggaccgggcgtacatttgttcttgtttt |
469 |
Q |
| |
|
|||||||| ||| | ||||||||||| ||| ||| ||||||| | || |||||| ||||| ||||| |||| |||||||||||||||||| |
|
|
| T |
11044091 |
gaacaactgcaaatagaattcaccattctgatatctttgaagggttgtctggtgttcattgttggactgggcatacatttgttcttgtttt |
11044181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 380 - 445
Target Start/End: Complemental strand, 55925130 - 55925070
Alignment:
| Q |
380 |
aacaacttcaagtggaattcaccatcctggtatacttgaaggatggtttggtgtccattggtggac |
445 |
Q |
| |
|
|||||| |||||||||||||||| ||||| |||||||||||||||||| | ||||||||||| |
|
|
| T |
55925130 |
aacaacatcaagtggaattcacc-----ggtatccttgaaggatggtttggtattcattggtggac |
55925070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 407 - 461
Target Start/End: Complemental strand, 5629880 - 5629826
Alignment:
| Q |
407 |
tggtatacttgaaggatggtttggtgtccattggtggaccgggcgtacatttgtt |
461 |
Q |
| |
|
|||||| |||||||||||||||||||| || |||||||| ||| | ||||||||| |
|
|
| T |
5629880 |
tggtattcttgaaggatggtttggtgtgcactggtggactgggaggacatttgtt |
5629826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University