View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5226-Insertion-2 (Length: 478)

Name: NF5226-Insertion-2
Description: NF5226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5226-Insertion-2
NF5226-Insertion-2
[»] chr4 (18 HSPs)
chr4 (223-478)||(20509731-20509991)
chr4 (245-445)||(22652653-22652852)
chr4 (80-159)||(48620208-48620286)
chr4 (80-154)||(52636694-52636768)
chr4 (27-61)||(3010455-3010489)
chr4 (27-61)||(4392064-4392098)
chr4 (27-61)||(7707154-7707188)
chr4 (27-61)||(27184966-27185000)
chr4 (80-159)||(42650568-42650643)
chr4 (27-61)||(43225059-43225093)
chr4 (80-113)||(23902504-23902537)
chr4 (29-61)||(8942656-8942688)
chr4 (29-61)||(22037693-22037725)
chr4 (28-60)||(22431571-22431603)
chr4 (30-58)||(40120673-40120701)
chr4 (294-370)||(40434556-40434632)
chr4 (91-155)||(53299885-53299948)
chr4 (29-61)||(56373225-56373257)
[»] chr5 (16 HSPs)
chr5 (231-478)||(12863989-12864241)
chr5 (231-474)||(12832018-12832266)
chr5 (251-370)||(19315570-19315692)
chr5 (294-366)||(42457117-42457189)
chr5 (27-61)||(15531218-15531252)
chr5 (27-61)||(19526511-19526545)
chr5 (27-61)||(36686605-36686639)
chr5 (28-61)||(11061817-11061850)
chr5 (27-60)||(19348454-19348487)
chr5 (28-61)||(39276185-39276218)
chr5 (28-60)||(3671075-3671107)
chr5 (29-61)||(5997246-5997278)
chr5 (29-61)||(8023284-8023316)
chr5 (29-61)||(13227901-13227933)
chr5 (28-60)||(30773508-30773540)
chr5 (29-61)||(32383617-32383649)
[»] chr7 (8 HSPs)
chr7 (244-478)||(41528748-41528984)
chr7 (27-61)||(9488168-9488202)
chr7 (31-61)||(33027616-33027646)
chr7 (27-61)||(36436891-36436925)
chr7 (80-159)||(7391482-7391560)
chr7 (29-61)||(19831448-19831480)
chr7 (90-154)||(33187929-33187992)
chr7 (80-156)||(38987327-38987403)
[»] chr6 (17 HSPs)
chr6 (26-159)||(20584758-20584891)
chr6 (223-374)||(12687525-12687679)
chr6 (82-159)||(34731247-34731323)
chr6 (82-159)||(34607773-34607849)
chr6 (306-374)||(27104697-27104765)
chr6 (306-374)||(27146506-27146574)
chr6 (79-159)||(27793679-27793759)
chr6 (170-219)||(20584692-20584741)
chr6 (297-369)||(17293342-17293414)
chr6 (311-366)||(10943610-10943665)
chr6 (80-159)||(25073320-25073398)
chr6 (27-61)||(559097-559131)
chr6 (27-61)||(2443210-2443244)
chr6 (27-61)||(27719938-27719972)
chr6 (31-61)||(34904697-34904727)
chr6 (29-61)||(12432023-12432055)
chr6 (28-60)||(22757038-22757070)
[»] chr1 (23 HSPs)
chr1 (223-445)||(34704016-34704243)
chr1 (294-374)||(6724318-6724398)
chr1 (80-159)||(17556596-17556674)
chr1 (30-61)||(23710783-23710814)
chr1 (248-370)||(25392930-25393054)
chr1 (80-159)||(49103026-49103104)
chr1 (31-61)||(1507103-1507133)
chr1 (27-61)||(13120937-13120971)
chr1 (27-61)||(31149786-31149820)
chr1 (85-159)||(35619583-35619656)
chr1 (27-61)||(39827353-39827387)
chr1 (27-61)||(41150564-41150598)
chr1 (27-61)||(42063608-42063642)
chr1 (309-370)||(22583800-22583861)
chr1 (28-61)||(29586947-29586980)
chr1 (309-370)||(33136722-33136783)
chr1 (302-370)||(3927199-3927267)
chr1 (30-58)||(7780488-7780516)
chr1 (29-61)||(19898240-19898272)
chr1 (29-61)||(28867853-28867885)
chr1 (29-61)||(29379791-29379823)
chr1 (29-61)||(29703525-29703557)
chr1 (80-159)||(41432839-41432916)
[»] chr2 (20 HSPs)
chr2 (306-403)||(9840191-9840290)
chr2 (297-446)||(27708717-27708868)
chr2 (306-430)||(39116842-39116968)
chr2 (223-370)||(30505059-30505203)
chr2 (306-370)||(27008671-27008735)
chr2 (28-61)||(5519356-5519389)
chr2 (29-61)||(43506896-43506928)
chr2 (27-61)||(2545748-2545782)
chr2 (27-61)||(3378139-3378173)
chr2 (27-61)||(24401444-24401478)
chr2 (85-159)||(27987595-27987667)
chr2 (85-159)||(28074128-28074200)
chr2 (27-61)||(41323567-41323601)
chr2 (306-363)||(2168110-2168167)
chr2 (28-61)||(2265484-2265517)
chr2 (28-61)||(8705834-8705867)
chr2 (90-155)||(41503104-41503168)
chr2 (29-61)||(9263665-9263697)
chr2 (29-61)||(21866025-21866057)
chr2 (30-58)||(39168530-39168558)
[»] chr3 (19 HSPs)
chr3 (91-159)||(3707034-3707101)
chr3 (91-159)||(49855893-49855960)
chr3 (96-158)||(7302016-7302077)
chr3 (27-61)||(54541384-54541418)
chr3 (28-60)||(44946521-44946553)
chr3 (80-154)||(32858764-32858837)
chr3 (27-61)||(40479402-40479436)
chr3 (28-61)||(37528082-37528115)
chr3 (28-61)||(37713313-37713346)
chr3 (28-61)||(52858680-52858713)
chr3 (80-121)||(53888453-53888494)
chr3 (29-61)||(2852681-2852713)
chr3 (29-61)||(8873614-8873646)
chr3 (33-61)||(24535950-24535978)
chr3 (306-370)||(25845140-25845204)
chr3 (29-61)||(29080617-29080649)
chr3 (80-120)||(35283054-35283094)
chr3 (306-370)||(51346840-51346904)
chr3 (29-61)||(54671568-54671600)
[»] chr8 (10 HSPs)
chr8 (81-148)||(5858338-5858404)
chr8 (294-401)||(31687005-31687114)
chr8 (85-159)||(5935119-5935192)
chr8 (81-159)||(31305849-31305926)
chr8 (27-61)||(31687407-31687441)
chr8 (28-61)||(8435809-8435842)
chr8 (90-158)||(7080366-7080434)
chr8 (29-61)||(17116302-17116334)
chr8 (33-61)||(30338320-30338348)
chr8 (29-61)||(41693370-41693402)
[»] scaffold0036 (1 HSPs)
scaffold0036 (91-159)||(82724-82792)
[»] scaffold1526 (1 HSPs)
scaffold1526 (27-61)||(1360-1394)
[»] scaffold0349 (1 HSPs)
scaffold0349 (27-61)||(9360-9394)
[»] scaffold0173 (1 HSPs)
scaffold0173 (31-61)||(22220-22250)
[»] scaffold0116 (1 HSPs)
scaffold0116 (28-61)||(25680-25713)
[»] scaffold0016 (1 HSPs)
scaffold0016 (28-61)||(92840-92873)


Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 223 - 478
Target Start/End: Original strand, 20509731 - 20509991
Alignment:
Q  223 ggtgttttaggaggagtatgtctttgatatgtgtcagttgggttgggagaaggagggtggggcgtggcgttgg---cggagtttgcttgcgtgggaggag 319  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||   ||||||||| ||||||||||||||    
T  20509731 ggtgtttaaggaggagtctgtctttgatatgtgtcagttgggttgggaggaggagggtggggcgtggcgttggaggcggagtttgtttgcgtgggaggag 20509830  T
Q  320 gagttggtgggggaattcatattattgcttcaaaatgttactttgcaggttaata--gatgataaatggttgtggacgttggaaacgtcaaaatcttttt 417  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||| |||||||||||||    
T  20509831 gagttggtgggggaattcgtattattgcttcaaaatgttactttgcaggttaataatgatgataaatggttgtggacgttggcaacatcaaaatcttttt 20509930  T
Q  418 ctgtccgtagtgcctacaattttttaacgacttatgttccaactgttacttcggtgcccgt 478  Q
    |||| ||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  20509931 ctgttcgtagagcctacaattttttaacgactcaggttccaactgttacttcggtgcccgt 20509991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 245 - 445
Target Start/End: Original strand, 22652653 - 22652852
Alignment:
Q  245 tttgatatgtgtcagttgggttgggagaaggagggtggggcgtggcgttggcggagtttgcttgcgtgggaggaggagttggtgggggaattcatattat 344  Q
    ||||||||||||||||| ||||||| | ||||||| | ||||||| | ||| ||   ||| ||||||||||||||||| ||||||| ||| | || |||     
T  22652653 tttgatatgtgtcagttaggttggggggaggagggagaggcgtggaggtggagg---ttgtttgcgtgggaggaggagatggtgggagaacttatgttac 22652749  T
Q  345 tgcttcaaaatgttactttgcaggttaata--gatgataaatggttgtggacgttggaaacgtcaaaatctttttctgtccgtagtgcctacaatttttt 442  Q
    ||||||| ||||| ||||||||||||||||  ||||||| |||||| ||||| || ||||| ||  |  |||||||||| |||||||  |||||||| ||    
T  22652750 tgcttcataatgtgactttgcaggttaataaggatgatagatggttatggacatttgaaacatctcatgctttttctgttcgtagtgtttacaatttctt 22652849  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 80 - 159
Target Start/End: Complemental strand, 48620286 - 48620208
Alignment:
Q  80 ggagggtttaatattttgaagaaaaataaactccccaaagccttcttctttcaatgtcatctatttctttcacttactcc 159  Q
    ||||||||| ||||||||||| ||||||| | ||||||||||  || ||| ||||||| |||||||||| ||||||||||    
T  48620286 ggagggttttatattttgaagtaaaataagccccccaaagcc-cctccttccaatgtcctctatttcttccacttactcc 48620208  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 154
Target Start/End: Complemental strand, 52636768 - 52636694
Alignment:
Q  80 ggagggtttaatattttgaagaaaaataaactccccaaagccttcttctttcaatgtcatctatttctttcactt 154  Q
    ||||||||| ||||| ||||||||||| ||| |||||||||| || |||| ||||||  |||||||||| |||||    
T  52636768 ggagggttttatattatgaagaaaaattaaccccccaaagccctcatcttccaatgtactctatttcttccactt 52636694  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 61
Target Start/End: Complemental strand, 3010489 - 3010455
Alignment:
Q  27 tttaggctctgtttggtaaaaataacggatagctg 61  Q
    |||||||||||||||||||||||| ||||||||||    
T  3010489 tttaggctctgtttggtaaaaatagcggatagctg 3010455  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 61
Target Start/End: Original strand, 4392064 - 4392098
Alignment:
Q  27 tttaggctctgtttggtaaaaataacggatagctg 61  Q
    |||||||||||||||||||||||| ||||||||||    
T  4392064 tttaggctctgtttggtaaaaatagcggatagctg 4392098  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 61
Target Start/End: Complemental strand, 7707188 - 7707154
Alignment:
Q  27 tttaggctctgtttggtaaaaataacggatagctg 61  Q
    |||||||||||||||||||||||| ||||||||||    
T  7707188 tttaggctctgtttggtaaaaatagcggatagctg 7707154  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 61
Target Start/End: Original strand, 27184966 - 27185000
Alignment:
Q  27 tttaggctctgtttggtaaaaataacggatagctg 61  Q
    |||||||||||||||||||||||| ||||||||||    
T  27184966 tttaggctctgtttggtaaaaatagcggatagctg 27185000  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 159
Target Start/End: Complemental strand, 42650643 - 42650568
Alignment:
Q  80 ggagggtttaatattttgaagaaaaataaactccccaaagccttcttctttcaatgtcatctatttctttcacttactcc 159  Q
    ||||||||| ||||||||||||||||||||  ||||||||||     || ||| |||| |||||||||| ||||||||||    
T  42650643 ggagggttttatattttgaagaaaaataaaacccccaaagcc----cctctcagtgtcctctatttcttccacttactcc 42650568  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 61
Target Start/End: Original strand, 43225059 - 43225093
Alignment:
Q  27 tttaggctctgtttggtaaaaataacggatagctg 61  Q
    |||||||||||||||||||||||| ||||||||||    
T  43225059 tttaggctctgtttggtaaaaatagcggatagctg 43225093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 113
Target Start/End: Original strand, 23902504 - 23902537
Alignment:
Q  80 ggagggtttaatattttgaagaaaaataaactcc 113  Q
    ||||||||| ||||||||||||||||||||||||    
T  23902504 ggagggtttcatattttgaagaaaaataaactcc 23902537  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 61
Target Start/End: Complemental strand, 8942688 - 8942656
Alignment:
Q  29 taggctctgtttggtaaaaataacggatagctg 61  Q
    |||||||||||||||||||||| ||||||||||    
T  8942688 taggctctgtttggtaaaaatagcggatagctg 8942656  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 22037693 - 22037725
Alignment:
Q  29 taggctctgtttggtaaaaataacggatagctg 61  Q
    |||||||||||||||||||||| ||||||||||    
T  22037693 taggctctgtttggtaaaaatagcggatagctg 22037725  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 60
Target Start/End: Complemental strand, 22431603 - 22431571
Alignment:
Q  28 ttaggctctgtttggtaaaaataacggatagct 60  Q
    ||||||||||||||||||||||| |||||||||    
T  22431603 ttaggctctgtttggtaaaaatagcggatagct 22431571  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 58
Target Start/End: Complemental strand, 40120701 - 40120673
Alignment:
Q  30 aggctctgtttggtaaaaataacggatag 58  Q
    |||||||||||||||||||||||||||||    
T  40120701 aggctctgtttggtaaaaataacggatag 40120673  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 294 - 370
Target Start/End: Original strand, 40434556 - 40434632
Alignment:
Q  294 ggcggagtttgcttgcgtgggaggaggagttggtgggggaattcatattattgcttcaaaatgttactttgcaggtt 370  Q
    ||||||| ||| |||||||||| ||||||| | ||||||||||    ||||||||||||||| | | ||||||||||    
T  40434556 ggcggaggttgtttgcgtgggaagaggagtagttgggggaattatgtttattgcttcaaaatatgattttgcaggtt 40434632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 91 - 155
Target Start/End: Complemental strand, 53299948 - 53299885
Alignment:
Q  91 tattttgaagaaaaataaactccccaaagccttcttctttcaatgtcatctatttctttcactta 155  Q
    |||| ||||||||||||||| | ||||| | |||| || ||||||||||||||||||| ||||||    
T  53299948 tattatgaagaaaaataaac-ctccaaaacattctcctctcaatgtcatctatttcttccactta 53299885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 61
Target Start/End: Complemental strand, 56373257 - 56373225
Alignment:
Q  29 taggctctgtttggtaaaaataacggatagctg 61  Q
    |||||||||||||||||||||| ||||||||||    
T  56373257 taggctctgtttggtaaaaatagcggatagctg 56373225  T

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Target: chr5 (Bit Score: 184; Significance: 2e-99; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 231 - 478
Target Start/End: Complemental strand, 12864241 - 12863989
Alignment:
Q  231 aggaggagtatgtctttgatatgtgtcagttgggttgggagaaggagggtggggcgtggcgttgg---cggagtttgcttgcgtgggaggaggagttggt 327  Q
    |||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||||||||   ||||||||| ||||||||||||||||||||||    
T  12864241 aggaggagtcggtctttgatatgtgtcagttgggttgggaggaggagggtggggcgtggcgttggaggcggagtttgtttgcgtgggaggaggagttggt 12864142  T
Q  328 gggggaattcatattattgcttcaaaatgttactttgcaggttaata--gatgataaatggttgtggacgttggaaacgtcaaaatctttttctgtccgt 425  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||| ||||||||||||||||| |||    
T  12864141 gggggaattcgtattattgcttcaaaatgttactttgcaggttaataatgatgataaatggttgtggacgttggcaacatcaaaatctttttctgttcgt 12864042  T
Q  426 agtgcctacaattttttaacgacttatgttccaactgttacttcggtgcccgt 478  Q
    || ||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  12864041 agagcctacaattttttaacgactcaggttccaactgttacttcggtgcccgt 12863989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 231 - 474
Target Start/End: Complemental strand, 12832266 - 12832018
Alignment:
Q  231 aggaggagtatgtctttgatatgtgtcagttgggttgggagaaggagggtggggcgtggcgttggcgg---agtttgcttgcgtgggaggaggagttggt 327  Q
    |||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||   |||||| ||||||||||||||||||||||    
T  12832266 aggaggagtcggtctttgatatgtgtcagttgggttgggaggaggagggtggggcgtggcgttggaggtggagtttgtttgcgtgggaggaggagttggt 12832167  T
Q  328 gggggaattcatattattgcttcaaaatgttactttgcaggttaata--gatgataaatggttgtggacgttggaaacgtcaaaatctttttctgtccgt 425  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||||| ||||||||||||||||| |||    
T  12832166 gggggaattcgtattattgcttcaaaatgttactttgcaggttaataatgatgataaatggctgtggacgttggaaacatcaaaatctttttctgttcgt 12832067  T
Q  426 agtgcctacaattttttaacgacttatgttccaactgttacttcggtgc 474  Q
    || ||||||||||||||||||||| | ||||||||||||||||||||||    
T  12832066 agagcctacaattttttaacgactcaggttccaactgttacttcggtgc 12832018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 251 - 370
Target Start/End: Complemental strand, 19315692 - 19315570
Alignment:
Q  251 atgtgtcagttgggttgggagaaggagggtggggcgtggcgttgg---cggagtttgcttgcgtgggaggaggagttggtgggggaattcatattattgc 347  Q
    ||||||| ||| ||||||| | ||||||||| ||||||| | |||   ||||| ||| ||||||||||||||||||||||||||||| | || ||| |||    
T  19315692 atgtgtccgttaggttggggggaggagggtgaggcgtggaggtggaggcggaggttgtttgcgtgggaggaggagttggtgggggaacttatgttactgc 19315593  T
Q  348 ttcaaaatgttactttgcaggtt 370  Q
    |||| ||||| ||||| ||||||    
T  19315592 ttcacaatgtgacttttcaggtt 19315570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 366
Target Start/End: Original strand, 42457117 - 42457189
Alignment:
Q  294 ggcggagtttgcttgcgtgggaggaggagttggtgggggaattcatattattgcttcaaaatgttactttgca 366  Q
    ||||||| ||| |||||||||||||||||  ||||||||||||    ||||||||||||||||| ||||||||    
T  42457117 ggcggaggttgtttgcgtgggaggaggagcaggtgggggaattatgtttattgcttcaaaatgtgactttgca 42457189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 61
Target Start/End: Complemental strand, 15531252 - 15531218
Alignment:
Q  27 tttaggctctgtttggtaaaaataacggatagctg 61  Q
    |||||||||||||||||||||||| ||||||||||    
T  15531252 tttaggctctgtttggtaaaaatagcggatagctg 15531218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 61
Target Start/End: Complemental strand, 19526545 - 19526511
Alignment:
Q  27 tttaggctctgtttggtaaaaataacggatagctg 61  Q
    |||||||||||||||||||||||| ||||||||||    
T  19526545 tttaggctctgtttggtaaaaatagcggatagctg 19526511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 61
Target Start/End: Complemental strand, 36686639 - 36686605
Alignment:
Q  27 tttaggctctgtttggtaaaaataacggatagctg 61  Q
    |||||||||||||||||||||||| ||||||||||    
T  36686639 tttaggctctgtttggtaaaaatagcggatagctg 36686605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 61
Target Start/End: Original strand, 11061817 - 11061850
Alignment:
Q  28 ttaggctctgtttggtaaaaataacggatagctg 61  Q
    ||||||||||||||||||||||| ||||||||||    
T  11061817 ttaggctctgtttggtaaaaatagcggatagctg 11061850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 60
Target Start/End: Complemental strand, 19348487 - 19348454
Alignment:
Q  27 tttaggctctgtttggtaaaaataacggatagct 60  Q
    |||||||||||||||||||||||| |||||||||    
T  19348487 tttaggctctgtttggtaaaaatagcggatagct 19348454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 61
Target Start/End: Complemental strand, 39276218 - 39276185
Alignment:
Q  28 ttaggctctgtttggtaaaaataacggatagctg 61  Q
    ||||||||||||||||||||||| ||||||||||    
T  39276218 ttaggctctgtttggtaaaaatagcggatagctg 39276185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 60
Target Start/End: Complemental strand, 3671107 - 3671075
Alignment:
Q  28 ttaggctctgtttggtaaaaataacggatagct 60  Q
    ||||||||||||||||||||||| |||||||||    
T  3671107 ttaggctctgtttggtaaaaatagcggatagct 3671075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 5997246 - 5997278
Alignment:
Q  29 taggctctgtttggtaaaaataacggatagctg 61  Q
    |||||||||||||||||||||| ||||||||||    
T  5997246 taggctctgtttggtaaaaatagcggatagctg 5997278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 8023284 - 8023316
Alignment:
Q  29 taggctctgtttggtaaaaataacggatagctg 61  Q
    |||||||||||||||||||||| ||||||||||    
T  8023284 taggctctgtttggtaaaaatagcggatagctg 8023316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 13227901 - 13227933
Alignment:
Q  29 taggctctgtttggtaaaaataacggatagctg 61  Q
    |||||||||||||||||||||| ||||||||||    
T  13227901 taggctctgtttggtaaaaatagcggatagctg 13227933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 60
Target Start/End: Original strand, 30773508 - 30773540
Alignment:
Q  28 ttaggctctgtttggtaaaaataacggatagct 60  Q
    ||||||||||||||||||||||| |||||||||    
T  30773508 ttaggctctgtttggtaaaaatagcggatagct 30773540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 61
Target Start/End: Complemental strand, 32383649 - 32383617
Alignment:
Q  29 taggctctgtttggtaaaaataacggatagctg 61  Q
    |||||||||||||||||||||| ||||||||||    
T  32383649 taggctctgtttggtaaaaatagcggatagctg 32383617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 161; Significance: 1e-85; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 244 - 478
Target Start/End: Original strand, 41528748 - 41528984
Alignment:
Q  244 ctttgatatgtgtcagttgggttgggagaaggagggtggggcgtggcgttgg---cggagtttgcttgcgtgggaggaggagttggtgggggaattcata 340  Q
    ||||||||||||| ||||||||||||||   |||||||||||||||||||||   ||||||||| |||||||||||||||||||||||||| ||||||||    
T  41528748 ctttgatatgtgtaagttgggttgggag---gagggtggggcgtggcgttggagacggagtttgtttgcgtgggaggaggagttggtggggtaattcata 41528844  T
Q  341 ttattgcttcaaaatgttactttgcaggttaata--gatgataaatggttgtggacgttggaaacgtcaaaatctttttctgtccgtagtgcctacaatt 438  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||  |||||||| |||||||| ||||||||||||||||    
T  41528845 ttattgcttcaaaatgttactttgcaggttaataatgatgataaatggttgtggacgttggaaatatcaaaatcattttctgttcgtagtgcctacaatt 41528944  T
Q  439 ttttaacgacttatgttccaactgttacttcggtgcccgt 478  Q
    ||||||||||| | |||||||||||||||||| |||||||    
T  41528945 ttttaacgactcaggttccaactgttacttcgatgcccgt 41528984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 61
Target Start/End: Complemental strand, 9488202 - 9488168
Alignment:
Q  27 tttaggctctgtttggtaaaaataacggatagctg 61  Q
    |||||||||||||||||||||||| ||||||||||    
T  9488202 tttaggctctgtttggtaaaaatagcggatagctg 9488168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 61
Target Start/End: Complemental strand, 33027646 - 33027616
Alignment:
Q  31 ggctctgtttggtaaaaataacggatagctg 61  Q
    |||||||||||||||||||||||||||||||    
T  33027646 ggctctgtttggtaaaaataacggatagctg 33027616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 61
Target Start/End: Complemental strand, 36436925 - 36436891
Alignment:
Q  27 tttaggctctgtttggtaaaaataacggatagctg 61  Q
    |||||||||||||||||||||||| ||||||||||    
T  36436925 tttaggctctgtttggtaaaaatagcggatagctg 36436891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 159
Target Start/End: Original strand, 7391482 - 7391560
Alignment:
Q  80 ggagggtttaatattttgaagaaaaataaactccccaaa-gccttcttctttcaatgtcatctatttctttcacttactcc 159  Q
    ||||||||| ||||||||||||||||||| | |||||||  |||||  || |||||||| |||||||||| ||| ||||||    
T  7391482 ggagggttttatattttgaagaaaaataagccccccaaattccttc--ctctcaatgtcttctatttcttccacctactcc 7391560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 19831448 - 19831480
Alignment:
Q  29 taggctctgtttggtaaaaataacggatagctg 61  Q
    |||||||||||||||||||||| ||||||||||    
T  19831448 taggctctgtttggtaaaaatagcggatagctg 19831480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 90 - 154
Target Start/End: Original strand, 33187929 - 33187992
Alignment:
Q  90 atattttgaagaaaaataaactccccaaagccttcttctttcaatgtcatctatttctttcactt 154  Q
    |||||||||||||||| || | |||||||||| ||| ||| ||||||| ||||||| ||||||||    
T  33187929 atattttgaagaaaaacaagccccccaaagcc-tctccttccaatgtcttctatttttttcactt 33187992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 80 - 156
Target Start/End: Complemental strand, 38987403 - 38987327
Alignment:
Q  80 ggagggtttaatattttgaagaaaaataaactccccaaagccttcttctttcaatgtcatctatttctttcacttac 156  Q
    |||| |||| ||||||||||||||||||||||  |||||| | | |  || ||||||| |||||||||| |||||||    
T  38987403 ggagagttttatattttgaagaaaaataaactttccaaagacctttatttccaatgtcctctatttcttccacttac 38987327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 118; Significance: 5e-60; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 26 - 159
Target Start/End: Complemental strand, 20584891 - 20584758
Alignment:
Q  26 ctttaggctctgtttggtaaaaataacggatagctggtgattgatagctgatagggagggtttaatattttgaagaaaaataaactccccaaagccttct 125  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||    
T  20584891 ctttaggctctgtttggtaaaaataatggatagctggtgattgatagctgataggaagggttttatattttgaagaaaaataaactccccaaagcattct 20584792  T
Q  126 tctttcaatgtcatctatttctttcacttactcc 159  Q
    ||||||||||||||||||||||||||||||||||    
T  20584791 tctttcaatgtcatctatttctttcacttactcc 20584758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 223 - 374
Target Start/End: Original strand, 12687525 - 12687679
Alignment:
Q  223 ggtgttttaggaggagtatgtctttgatatgtgtcagttgggttgggagaaggagggtggggcgtggcgttggcggagt---ttgcttgcgtgggaggag 319  Q
    ||||||| ||| ||||| ||| || | |||| ||||||| || ||||   ||||||||||||||||| | ||| || ||   ||| || |||||||||||    
T  12687525 ggtgtttaaggcggagtctgttttggttatgagtcagttagggtggggtgaggagggtggggcgtggagatggaggcgtaggttgtttacgtgggaggag 12687624  T
Q  320 gagttggtgggggaattcatattattgcttcaaaatgttactttgcaggttaata 374  Q
    ||||||||||||||  |||| ||||| ||||| ||||||||||||||||||||||    
T  12687625 gagttggtgggggacctcattttattacttcataatgttactttgcaggttaata 12687679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 82 - 159
Target Start/End: Original strand, 34731247 - 34731323
Alignment:
Q  82 agggtttaatattttgaagaaaaataaactccccaaagccttcttctttcaatgtcatctatttctttcacttactcc 159  Q
    ||||||| ||||||||||||||||||| |||||||||| || || ||||||||||| |||||||||| ||||||||||    
T  34731247 agggtttcatattttgaagaaaaataagctccccaaag-ctcctcctttcaatgtcttctatttcttacacttactcc 34731323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 82 - 159
Target Start/End: Original strand, 34607773 - 34607849
Alignment:
Q  82 agggtttaatattttgaagaaaaataaactccccaaagccttcttctttcaatgtcatctatttctttcacttactcc 159  Q
    ||||||| ||||||||||||||||||| ||||||| || || || ||||||||||| |||||||||| |||| |||||    
T  34607773 agggtttcatattttgaagaaaaataagctccccagag-ctcctcctttcaatgtcttctatttcttacactcactcc 34607849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 306 - 374
Target Start/End: Original strand, 27104697 - 27104765
Alignment:
Q  306 ttgcgtgggaggaggagttggtgggggaattcatattattgcttcaaaatgttactttgcaggttaata 374  Q
    ||||||||||||||| ||||||||||||  | || ||||| ||||| ||| ||||||||||||||||||    
T  27104697 ttgcgtgggaggaggggttggtgggggaccttattttattacttcataattttactttgcaggttaata 27104765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 306 - 374
Target Start/End: Original strand, 27146506 - 27146574
Alignment:
Q  306 ttgcgtgggaggaggagttggtgggggaattcatattattgcttcaaaatgttactttgcaggttaata 374  Q
    ||||||||||||||| ||||||||||||  | || ||||| ||||| ||| ||||||||||||||||||    
T  27146506 ttgcgtgggaggaggggttggtgggggaccttattttattacttcataattttactttgcaggttaata 27146574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 79 - 159
Target Start/End: Original strand, 27793679 - 27793759
Alignment:
Q  79 gggagggtttaatattttgaagaaaaataaactccccaaagccttcttctttcaatgtcatctatttctttcacttactcc 159  Q
    |||||||||| ||||||||||||||||||||| | ||||||| || | ||| ||||||| | |||||||| |||| |||||    
T  27793679 gggagggttttatattttgaagaaaaataaaccctccaaagcattttccttccaatgtcctttatttcttccactgactcc 27793759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 170 - 219
Target Start/End: Complemental strand, 20584741 - 20584692
Alignment:
Q  170 ctcttccaaactctccctttctttctcatccaaactcaaaaacaaaacct 219  Q
    |||||||||||||||||||||||||| ||||||||| | | |||||||||    
T  20584741 ctcttccaaactctccctttctttcttatccaaactgagatacaaaacct 20584692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 297 - 369
Target Start/End: Complemental strand, 17293414 - 17293342
Alignment:
Q  297 ggagtttgcttgcgtgggaggaggagttggtgggggaattcatattattgcttcaaaatgttactttgcaggt 369  Q
    |||| ||| |||||||||| || ||||||||||||||| | |  ||||| ||||||||||| |||||||||||    
T  17293414 ggaggttgtttgcgtgggaagaagagttggtgggggaacttaggttattacttcaaaatgtgactttgcaggt 17293342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 366
Target Start/End: Original strand, 10943610 - 10943665
Alignment:
Q  311 tgggaggaggagttggtgggggaattcatattattgcttcaaaatgttactttgca 366  Q
    ||||||||| |||| ||||||||| | |||||||| ||||||||||| ||||||||    
T  10943610 tgggaggagtagttagtgggggaacttatattattacttcaaaatgtcactttgca 10943665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 159
Target Start/End: Original strand, 25073320 - 25073398
Alignment:
Q  80 ggagggtttaatattttgaagaaaaataaactccccaaagccttcttctttcaatgtcatctatttctttcacttactcc 159  Q
    ||||||||| ||||||||||||||||||||| ||||||| ||  || ||| ||||||  |||||||||| || |||||||    
T  25073320 ggagggttttatattttgaagaaaaataaac-ccccaaaaccccctccttccaatgttctctatttcttccatttactcc 25073398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 61
Target Start/End: Complemental strand, 559131 - 559097
Alignment:
Q  27 tttaggctctgtttggtaaaaataacggatagctg 61  Q
    |||||||||||||||||||||||| ||||||||||    
T  559131 tttaggctctgtttggtaaaaatagcggatagctg 559097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 61
Target Start/End: Complemental strand, 2443244 - 2443210
Alignment:
Q  27 tttaggctctgtttggtaaaaataacggatagctg 61  Q
    |||||||||||||||||||||||| ||||||||||    
T  2443244 tttaggctctgtttggtaaaaatagcggatagctg 2443210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 61
Target Start/End: Original strand, 27719938 - 27719972
Alignment:
Q  27 tttaggctctgtttggtaaaaataacggatagctg 61  Q
    |||||||||||||||||||||||| ||||||||||    
T  27719938 tttaggctctgtttggtaaaaatagcggatagctg 27719972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 61
Target Start/End: Complemental strand, 34904727 - 34904697
Alignment:
Q  31 ggctctgtttggtaaaaataacggatagctg 61  Q
    |||||||||||||||||||||||||||||||    
T  34904727 ggctctgtttggtaaaaataacggatagctg 34904697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 12432023 - 12432055
Alignment:
Q  29 taggctctgtttggtaaaaataacggatagctg 61  Q
    |||||||||||||||||||||| ||||||||||    
T  12432023 taggctctgtttggtaaaaatagcggatagctg 12432055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 60
Target Start/End: Complemental strand, 22757070 - 22757038
Alignment:
Q  28 ttaggctctgtttggtaaaaataacggatagct 60  Q
    ||||||||||||||||||||||| |||||||||    
T  22757070 ttaggctctgtttggtaaaaatagcggatagct 22757038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 223 - 445
Target Start/End: Complemental strand, 34704243 - 34704016
Alignment:
Q  223 ggtgttttaggaggagtatgtctttgatatgtgtcagttgggttgggagaaggagggtggggcgtggcgttggcgg---agtttgcttgcgtgggaggag 319  Q
    ||||||| ||| ||||| ||||||||||||| ||||||||||||||| | ||||||||||||||||| | ||| |    || ||| | || | |||||||    
T  34704243 ggtgtttaagggggagtctgtctttgatatgagtcagttgggttggggggaggagggtggggcgtggaggtggagacataggttgttagctttggaggag 34704144  T
Q  320 gagttggtgggggaattcatattattgcttcaaaatgttactttgcaggttaata--gatgataaatggttgtggacgttggaaacgtcaaaatcttttt 417  Q
    ||||||||||||||  |||| ||| ||||||||| |||||||||||||||||| |  ||||||||||| || ||||| |||||||| || ||| ||||||    
T  34704143 gagttggtgggggagctcattttactgcttcaaattgttactttgcaggttaacaaggatgataaatgattatggacattggaaacttctaaagcttttt 34704044  T
Q  418 ctgtccgtagtgcctacaattttttaac 445  Q
    |||| ||||| |  |||||| |||||||    
T  34704043 ctgttcgtagcgtatacaatcttttaac 34704016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 294 - 374
Target Start/End: Complemental strand, 6724398 - 6724318
Alignment:
Q  294 ggcggagtttgcttgcgtgggaggaggagttggtgggggaattcatattattgcttcaaaatgttactttgcaggttaata 374  Q
    ||||||| ||| ||||||||||||||||||||||||||||| | | |||| ||||||  ||||||| ||||||||||||||    
T  6724398 ggcggaggttgtttgcgtgggaggaggagttggtgggggaaattaaattactgcttcttaatgttaatttgcaggttaata 6724318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 80 - 159
Target Start/End: Complemental strand, 17556674 - 17556596
Alignment:
Q  80 ggagggtttaatattttgaagaaaaataaactccccaaagccttcttctttcaatgtcatctatttctttcacttactcc 159  Q
    ||||||||| ||||||||||||||||||| | |||||||||| ||| ||  ||||||| |||||||||| ||||||||||    
T  17556674 ggagggttttatattttgaagaaaaataagccccccaaagcc-tctcctcccaatgtcctctatttcttccacttactcc 17556596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 61
Target Start/End: Complemental strand, 23710814 - 23710783
Alignment:
Q  30 aggctctgtttggtaaaaataacggatagctg 61  Q
    ||||||||||||||||||||||||||||||||    
T  23710814 aggctctgtttggtaaaaataacggatagctg 23710783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 370
Target Start/End: Complemental strand, 25393054 - 25392930
Alignment:
Q  248 gatatgtgtcagttgggttgggagaaggagggtggggcgtggcgttgg---cggagtttgcttgcgtgggaggaggagttggtgggggaattcatattat 344  Q
    |||||||||||||| ||||||  || |||||||| | ||||| | |||   ||||| ||| |||| |||||||||||||||||||||||| | |  |||     
T  25393054 gatatgtgtcagttaggttggtgga-ggagggtgagacgtggaggtggtgacggaggttgtttgcatgggaggaggagttggtgggggaacttaggttac 25392956  T
Q  345 tgcttcaaaatgttactttgcaggtt 370  Q
    | ||||| ||||| ||||||||||||    
T  25392955 ttcttcataatgtgactttgcaggtt 25392930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 159
Target Start/End: Original strand, 49103026 - 49103104
Alignment:
Q  80 ggagggtttaatattttgaagaaaaataaactccccaaagccttcttctttcaatgtcatctatttctttcacttactcc 159  Q
    ||||||||| || |||||||||||||||||| | ||||||||  || ||  ||||||| |||||||||| ||||||||||    
T  49103026 ggagggttttatgttttgaagaaaaataaaccctccaaagcc-cctcctcccaatgtcctctatttcttccacttactcc 49103104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 61
Target Start/End: Original strand, 1507103 - 1507133
Alignment:
Q  31 ggctctgtttggtaaaaataacggatagctg 61  Q
    |||||||||||||||||||||||||||||||    
T  1507103 ggctctgtttggtaaaaataacggatagctg 1507133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 61
Target Start/End: Original strand, 13120937 - 13120971
Alignment:
Q  27 tttaggctctgtttggtaaaaataacggatagctg 61  Q
    |||||||||||||||||||||||| ||||||||||    
T  13120937 tttaggctctgtttggtaaaaatagcggatagctg 13120971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 61
Target Start/End: Original strand, 31149786 - 31149820
Alignment:
Q  27 tttaggctctgtttggtaaaaataacggatagctg 61  Q
    |||||||||||||||||||||||| ||||||||||    
T  31149786 tttaggctctgtttggtaaaaatagcggatagctg 31149820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 159
Target Start/End: Original strand, 35619583 - 35619656
Alignment:
Q  85 gtttaatattttgaagaaaaataaactccccaaagccttcttctttcaatgtcatctatttctttcacttactcc 159  Q
    |||| ||||||||||||||||||| |  |||||||||  || ||| |||| |||| |||||||||||||||||||    
T  35619583 gttttatattttgaagaaaaataagcctcccaaagcc-cctccttccaatatcatttatttctttcacttactcc 35619656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 61
Target Start/End: Complemental strand, 39827387 - 39827353
Alignment:
Q  27 tttaggctctgtttggtaaaaataacggatagctg 61  Q
    |||||||||||||||||||||||| ||||||||||    
T  39827387 tttaggctctgtttggtaaaaatagcggatagctg 39827353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 61
Target Start/End: Original strand, 41150564 - 41150598
Alignment:
Q  27 tttaggctctgtttggtaaaaataacggatagctg 61  Q
    |||||||||||||||||||||||| ||||||||||    
T  41150564 tttaggctctgtttggtaaaaatagcggatagctg 41150598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 61
Target Start/End: Original strand, 42063608 - 42063642
Alignment:
Q  27 tttaggctctgtttggtaaaaataacggatagctg 61  Q
    |||||||||||||||||||||||| ||||||||||    
T  42063608 tttaggctctgtttggtaaaaatagcggatagctg 42063642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 370
Target Start/End: Complemental strand, 22583861 - 22583800
Alignment:
Q  309 cgtgggaggaggagttggtgggggaattcatattattgcttcaaaatgttactttgcaggtt 370  Q
    |||||||||| ||||||||||||||| | | |||||| ||||||||||| | ||| ||||||    
T  22583861 cgtgggaggatgagttggtgggggaacttacattattacttcaaaatgtaaatttccaggtt 22583800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 61
Target Start/End: Complemental strand, 29586980 - 29586947
Alignment:
Q  28 ttaggctctgtttggtaaaaataacggatagctg 61  Q
    ||||||||||||||||||||||| ||||||||||    
T  29586980 ttaggctctgtttggtaaaaatagcggatagctg 29586947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 370
Target Start/End: Complemental strand, 33136783 - 33136722
Alignment:
Q  309 cgtgggaggaggagttggtgggggaattcatattattgcttcaaaatgttactttgcaggtt 370  Q
    ||||||||||||||   |||||||||||    ||||||||||||||||| ||||||||||||    
T  33136783 cgtgggaggaggaggccgtgggggaattatgtttattgcttcaaaatgtgactttgcaggtt 33136722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 370
Target Start/End: Complemental strand, 3927267 - 3927199
Alignment:
Q  302 ttgcttgcgtgggaggaggagttggtgggggaattcatattattgcttcaaaatgttactttgcaggtt 370  Q
    ||||||| |||||||||| ||  || |||||||||    ||||||||||||||||| ||||||||||||    
T  3927267 ttgcttgtgtgggaggagaagcaggcgggggaattatgtttattgcttcaaaatgtaactttgcaggtt 3927199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 58
Target Start/End: Original strand, 7780488 - 7780516
Alignment:
Q  30 aggctctgtttggtaaaaataacggatag 58  Q
    |||||||||||||||||||||||||||||    
T  7780488 aggctctgtttggtaaaaataacggatag 7780516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 19898240 - 19898272
Alignment:
Q  29 taggctctgtttggtaaaaataacggatagctg 61  Q
    |||||||||||||||||||||| ||||||||||    
T  19898240 taggctctgtttggtaaaaatagcggatagctg 19898272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 28867853 - 28867885
Alignment:
Q  29 taggctctgtttggtaaaaataacggatagctg 61  Q
    |||||||||||||||||||||| ||||||||||    
T  28867853 taggctctgtttggtaaaaatagcggatagctg 28867885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 61
Target Start/End: Complemental strand, 29379823 - 29379791
Alignment:
Q  29 taggctctgtttggtaaaaataacggatagctg 61  Q
    |||||||||||||||||||||| ||||||||||    
T  29379823 taggctctgtttggtaaaaatagcggatagctg 29379791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 29703525 - 29703557
Alignment:
Q  29 taggctctgtttggtaaaaataacggatagctg 61  Q
    |||||||||||||||||||||| ||||||||||    
T  29703525 taggctctgtttggtaaaaatagcggatagctg 29703557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 80 - 159
Target Start/End: Original strand, 41432839 - 41432916
Alignment:
Q  80 ggagggtttaatattttgaagaaaaataaactccccaaagccttcttctttcaatgtcatctatttctttcacttactcc 159  Q
    ||||||||| ||||| ||||||||||| ||  |||||||||||||  |  |||||||||| |||||||| ||||| ||||    
T  41432839 ggagggttttatattatgaagaaaaatgaaacccccaaagccttc--ccctcaatgtcatatatttcttccacttgctcc 41432916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 306 - 403
Target Start/End: Original strand, 9840191 - 9840290
Alignment:
Q  306 ttgcgtgggaggaggagttggtgggggaattcatattattgcttcaaaatgttactttgcaggttaata--gatgataaatggttgtggacgttggaaac 403  Q
    ||||||||||||||||||||||||||||| | || |||  |||||||||||| |||||||||||||| |  |||||||||||||| ||||| ||||||||    
T  9840191 ttgcgtgggaggaggagttggtgggggaacttattttacagcttcaaaatgtgactttgcaggttaacaaggatgataaatggttatggacattggaaac 9840290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 297 - 446
Target Start/End: Complemental strand, 27708868 - 27708717
Alignment:
Q  297 ggagtttgcttgcgtgggaggaggagttggtgggggaattcatattattgcttcaaaatgttactttgcaggttaata--gatgataaatggttgtggac 394  Q
    |||| ||| ||||||||||||||||||||||||||||| | || |||  |||||| | || |||||||||||||| ||  ||||||| |||| | |||||    
T  27708868 ggaggttgtttgcgtgggaggaggagttggtgggggaacttatgttaccgcttcatactgctactttgcaggttattaaggatgatagatggctatggac 27708769  T
Q  395 gttggaaacgtcaaaatctttttctgtccgtagtgcctacaattttttaacg 446  Q
     |||||||| ||  |||| |||| |||  |||||| ||||||||||||||||    
T  27708768 attggaaacttctcaatcattttttgtttgtagtgtctacaattttttaacg 27708717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 306 - 430
Target Start/End: Original strand, 39116842 - 39116968
Alignment:
Q  306 ttgcgtgggaggaggagttggtgggggaattcatattattgcttcaaaatgttactttgcaggttaata--gatgataaatggttgtggacgttggaaac 403  Q
    |||||||||||||||| |||||||||||| | || ||| | ||||| |||||||| |||||||||||||  |||||||||||| | ||||| |||||| |    
T  39116842 ttgcgtgggaggaggaattggtgggggaacttattttactacttcataatgttaccttgcaggttaatatggatgataaatggctttggactttggaatc 39116941  T
Q  404 gt-caaaatctttttctgtccgtagtgc 430  Q
     | ||||||| |||||||| ||||||||    
T  39116942 ctccaaaatc-ttttctgtacgtagtgc 39116968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 223 - 370
Target Start/End: Original strand, 30505059 - 30505203
Alignment:
Q  223 ggtgttttaggaggagtatgtctttgatatgtgtcagttgggttgggagaaggagggtggggcgtggcgttggcggagtttgcttgcgtgggaggaggag 322  Q
    ||||||| ||| ||||| ||| ||||||||||||||||| ||||||| | ||||||| | |||||||    ||||||  ||| |||||| ||||||||||    
T  30505059 ggtgtttaagggggagtctgtgtttgatatgtgtcagttaggttggggggaggagggggaggcgtgg---aggcggatgttgtttgcgtcggaggaggag 30505155  T
Q  323 ttggtgggggaattcatattattgcttcaaaatgttactttgcaggtt 370  Q
    ||||||||| || | || ||| ||||| | | ||| ||||||||||||    
T  30505156 ttggtggggaaacttatgttactgctttatactgtgactttgcaggtt 30505203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 306 - 370
Target Start/End: Original strand, 27008671 - 27008735
Alignment:
Q  306 ttgcgtgggaggaggagttggtgggggaattcatattattgcttcaaaatgttactttgcaggtt 370  Q
    ||||||||||||||||||||||||||||| | |||||| | ||||| ||||| ||||||||||||    
T  27008671 ttgcgtgggaggaggagttggtgggggaacttatattactacttcataatgtgactttgcaggtt 27008735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 28 - 61
Target Start/End: Original strand, 5519356 - 5519389
Alignment:
Q  28 ttaggctctgtttggtaaaaataacggatagctg 61  Q
    ||||||||||||||||||||||||||||||||||    
T  5519356 ttaggctctgtttggtaaaaataacggatagctg 5519389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 43506896 - 43506928
Alignment:
Q  29 taggctctgtttggtaaaaataacggatagctg 61  Q
    |||||||||||||||||||||||||||||||||    
T  43506896 taggctctgtttggtaaaaataacggatagctg 43506928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 61
Target Start/End: Original strand, 2545748 - 2545782
Alignment:
Q  27 tttaggctctgtttggtaaaaataacggatagctg 61  Q
    |||||||||||||||||||||||| ||||||||||    
T  2545748 tttaggctctgtttggtaaaaatagcggatagctg 2545782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 61
Target Start/End: Complemental strand, 3378173 - 3378139
Alignment:
Q  27 tttaggctctgtttggtaaaaataacggatagctg 61  Q
    |||||||||||||||||||||||| ||||||||||    
T  3378173 tttaggctctgtttggtaaaaatagcggatagctg 3378139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 61
Target Start/End: Original strand, 24401444 - 24401478
Alignment:
Q  27 tttaggctctgtttggtaaaaataacggatagctg 61  Q
    |||||||||||||||||||||||| ||||||||||    
T  24401444 tttaggctctgtttggtaaaaatagcggatagctg 24401478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 159
Target Start/End: Complemental strand, 27987667 - 27987595
Alignment:
Q  85 gtttaatattttgaagaaaaataaactccccaaagccttcttctttcaatgtcatctatttctttcacttactcc 159  Q
    |||| ||||||||||||||||||| | ||||||||||  || ||| ||||||| | |||||||||||||||||||    
T  27987667 gttttatattttgaagaaaaataagc-ccccaaagccc-ctccttccaatgtcctatatttctttcacttactcc 27987595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 159
Target Start/End: Complemental strand, 28074200 - 28074128
Alignment:
Q  85 gtttaatattttgaagaaaaataaactccccaaagccttcttctttcaatgtcatctatttctttcacttactcc 159  Q
    |||| ||||||||||||||||||| | ||||||||||  || ||| ||||||| | |||||||||||||||||||    
T  28074200 gttttatattttgaagaaaaataagc-ccccaaagccc-ctccttccaatgtcctatatttctttcacttactcc 28074128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 61
Target Start/End: Complemental strand, 41323601 - 41323567
Alignment:
Q  27 tttaggctctgtttggtaaaaataacggatagctg 61  Q
    |||||||||||||||||||||||| ||||||||||    
T  41323601 tttaggctctgtttggtaaaaatagcggatagctg 41323567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 363
Target Start/End: Complemental strand, 2168167 - 2168110
Alignment:
Q  306 ttgcgtgggaggaggagttggtgggggaattcatattattgcttcaaaatgttacttt 363  Q
    |||||||||| |||||||||||||||||| | | | |||| |||||||||||| ||||    
T  2168167 ttgcgtgggaagaggagttggtgggggaacttagaatattacttcaaaatgtttcttt 2168110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 61
Target Start/End: Original strand, 2265484 - 2265517
Alignment:
Q  28 ttaggctctgtttggtaaaaataacggatagctg 61  Q
    ||||||||||||||||||||||| ||||||||||    
T  2265484 ttaggctctgtttggtaaaaatagcggatagctg 2265517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 61
Target Start/End: Original strand, 8705834 - 8705867
Alignment:
Q  28 ttaggctctgtttggtaaaaataacggatagctg 61  Q
    ||||||||||||||||||||||| ||||||||||    
T  8705834 ttaggctctgtttggtaaaaatagcggatagctg 8705867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 155
Target Start/End: Complemental strand, 41503168 - 41503104
Alignment:
Q  90 atattttgaagaaaaataaactccccaaagccttcttctttcaatgtcatctatttctttcactta 155  Q
    ||||| ||||||||||| ||| | |||||||  || |||||||||||||| |||||||||||||||    
T  41503168 atattatgaagaaaaatgaac-ctccaaagctctcatctttcaatgtcatttatttctttcactta 41503104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 9263665 - 9263697
Alignment:
Q  29 taggctctgtttggtaaaaataacggatagctg 61  Q
    |||||||||||||||||||||| ||||||||||    
T  9263665 taggctctgtttggtaaaaatagcggatagctg 9263697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 61
Target Start/End: Complemental strand, 21866057 - 21866025
Alignment:
Q  29 taggctctgtttggtaaaaataacggatagctg 61  Q
    |||||||||||||||||||||| ||||||||||    
T  21866057 taggctctgtttggtaaaaatagcggatagctg 21866025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 58
Target Start/End: Complemental strand, 39168558 - 39168530
Alignment:
Q  30 aggctctgtttggtaaaaataacggatag 58  Q
    |||||||||||||||||||||||||||||    
T  39168558 aggctctgtttggtaaaaataacggatag 39168530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 3707101 - 3707034
Alignment:
Q  91 tattttgaagaaaaataaactccccaaagccttcttctttcaatgtcatctatttctttcacttactcc 159  Q
    |||| ||||||||||| ||| |||||||||||||| || ||||||||||||||||||| ||||| ||||    
T  3707101 tattatgaagaaaaatgaac-ccccaaagccttctcctctcaatgtcatctatttcttccacttgctcc 3707034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 91 - 159
Target Start/End: Original strand, 49855893 - 49855960
Alignment:
Q  91 tattttgaagaaaaataaactccccaaagccttcttctttcaatgtcatctatttctttcacttactcc 159  Q
    |||| ||||||||||| ||| ||||||| ||||| ||| ||||||||||||||||||||||||| ||||    
T  49855893 tattatgaagaaaaatgaac-ccccaaaaccttcctctctcaatgtcatctatttctttcacttgctcc 49855960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 158
Target Start/End: Complemental strand, 7302077 - 7302016
Alignment:
Q  96 tgaagaaaaataaactccccaaagccttcttctttcaatgtcatctatttctttcacttactc 158  Q
    ||||||||||| || ||||||||||||| |||| ||||||| |||||||||||| ||||||||    
T  7302077 tgaagaaaaatgaa-tccccaaagccttattctctcaatgttatctatttcttttacttactc 7302016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 61
Target Start/End: Original strand, 54541384 - 54541418
Alignment:
Q  27 tttaggctctgtttggtaaaaataacggatagctg 61  Q
    |||||||||||||||||||||||||||||||||||    
T  54541384 tttaggctctgtttggtaaaaataacggatagctg 54541418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 60
Target Start/End: Original strand, 44946521 - 44946553
Alignment:
Q  28 ttaggctctgtttggtaaaaataacggatagct 60  Q
    |||||||||||||||||||||||||||||||||    
T  44946521 ttaggctctgtttggtaaaaataacggatagct 44946553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 154
Target Start/End: Complemental strand, 32858837 - 32858764
Alignment:
Q  80 ggagggtttaatattttgaagaaaaataaactccccaaagccttcttctttcaatgtcatctatttctttcactt 154  Q
    ||||| ||| ||||| ||||||||||| ||| ||||||||||||   || ||||||||||||||||||| |||||    
T  32858837 ggaggattttatattatgaagaaaaatgaac-ccccaaagcctttccctctcaatgtcatctatttcttccactt 32858764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 61
Target Start/End: Original strand, 40479402 - 40479436
Alignment:
Q  27 tttaggctctgtttggtaaaaataacggatagctg 61  Q
    |||||||||||||||||||||||| ||||||||||    
T  40479402 tttaggctctgtttggtaaaaatagcggatagctg 40479436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 61
Target Start/End: Original strand, 37528082 - 37528115
Alignment:
Q  28 ttaggctctgtttggtaaaaataacggatagctg 61  Q
    ||||||||||||||||||||||| ||||||||||    
T  37528082 ttaggctctgtttggtaaaaatagcggatagctg 37528115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 61
Target Start/End: Original strand, 37713313 - 37713346
Alignment:
Q  28 ttaggctctgtttggtaaaaataacggatagctg 61  Q
    ||||||||||||||||||||||| ||||||||||    
T  37713313 ttaggctctgtttggtaaaaatagcggatagctg 37713346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 61
Target Start/End: Complemental strand, 52858713 - 52858680
Alignment:
Q  28 ttaggctctgtttggtaaaaataacggatagctg 61  Q
    ||||||||||||||||||||||| ||||||||||    
T  52858713 ttaggctctgtttggtaaaaatagcggatagctg 52858680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 121
Target Start/End: Complemental strand, 53888494 - 53888453
Alignment:
Q  80 ggagggtttaatattttgaagaaaaataaactccccaaagcc 121  Q
    ||||||||| ||||||||||||||||||| | ||||||||||    
T  53888494 ggagggttttatattttgaagaaaaataagccccccaaagcc 53888453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 61
Target Start/End: Complemental strand, 2852713 - 2852681
Alignment:
Q  29 taggctctgtttggtaaaaataacggatagctg 61  Q
    |||||||||||||||||||||| ||||||||||    
T  2852713 taggctctgtttggtaaaaatagcggatagctg 2852681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 61
Target Start/End: Complemental strand, 8873646 - 8873614
Alignment:
Q  29 taggctctgtttggtaaaaataacggatagctg 61  Q
    |||||||||||||||||||||| ||||||||||    
T  8873646 taggctctgtttggtaaaaatagcggatagctg 8873614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 61
Target Start/End: Original strand, 24535950 - 24535978
Alignment:
Q  33 ctctgtttggtaaaaataacggatagctg 61  Q
    |||||||||||||||||||||||||||||    
T  24535950 ctctgtttggtaaaaataacggatagctg 24535978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 370
Target Start/End: Original strand, 25845140 - 25845204
Alignment:
Q  306 ttgcgtgggaggaggagttggtgggggaattcatattattgcttcaaaatgttactttgcaggtt 370  Q
    |||| |||||||||||||||||||  ||| | | |||||| ||||| ||||| ||||||||||||    
T  25845140 ttgcttgggaggaggagttggtggacgaacttagattattacttcataatgtcactttgcaggtt 25845204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 29080617 - 29080649
Alignment:
Q  29 taggctctgtttggtaaaaataacggatagctg 61  Q
    |||||||||||||||||||||| ||||||||||    
T  29080617 taggctctgtttggtaaaaatagcggatagctg 29080649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 35283094 - 35283054
Alignment:
Q  80 ggagggtttaatattttgaagaaaaataaactccccaaagc 120  Q
    ||||||||| ||||||||||||||||| ||| |||||||||    
T  35283094 ggagggttttatattttgaagaaaaattaaccccccaaagc 35283054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 370
Target Start/End: Complemental strand, 51346904 - 51346840
Alignment:
Q  306 ttgcgtgggaggaggagttggtgggggaattcatattattgcttcaaaatgttactttgcaggtt 370  Q
    |||||||||||||||||  |||||||||| ||   ||||| ||||||||| | ||||||||||||    
T  51346904 ttgcgtgggaggaggaggcggtgggggaactctgtttattacttcaaaatatgactttgcaggtt 51346840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 54671568 - 54671600
Alignment:
Q  29 taggctctgtttggtaaaaataacggatagctg 61  Q
    |||||||||||||||||||||| ||||||||||    
T  54671568 taggctctgtttggtaaaaatagcggatagctg 54671600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 81 - 148
Target Start/End: Original strand, 5858338 - 5858404
Alignment:
Q  81 gagggtttaatattttgaagaaaaataaactccccaaagccttcttctttcaatgtcatctatttctt 148  Q
    |||||||| |||||||||||||||||| || |||||||||| || || | ||||||||||||||||||    
T  5858338 gagggttttatattttgaagaaaaatataccccccaaagccctc-tcctccaatgtcatctatttctt 5858404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 294 - 401
Target Start/End: Complemental strand, 31687114 - 31687005
Alignment:
Q  294 ggcggagtttgcttgcgtgggaggaggagttggtgggggaattcatattattgcttcaaaatgttactttgcaggttaata--gatgataaatggttgtg 391  Q
    ||||||| ||| |||||||||||||||||  |||||| ||||| || ||||| ||||| |||||   |||||||||| |||  ||||  |||||||||||    
T  31687114 ggcggaggttgtttgcgtgggaggaggaggaggtgggagaattaatgttattacttcataatgtacatttgcaggttgatagggatgccaaatggttgtg 31687015  T
Q  392 gacgttggaa 401  Q
    ||| ||||||    
T  31687014 gacattggaa 31687005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 159
Target Start/End: Complemental strand, 5935192 - 5935119
Alignment:
Q  85 gtttaatattttgaagaaaaataaactccccaaagccttcttctttcaatgtcatctatttctttcacttactcc 159  Q
    |||| ||||||||||||||| ||| | | ||||| ||| || |||||||||||||||||||||| || |||||||    
T  5935192 gttttatattttgaagaaaattaagccctccaaaacct-ctcctttcaatgtcatctatttcttccatttactcc 5935119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 159
Target Start/End: Original strand, 31305849 - 31305926
Alignment:
Q  81 gagggtttaatattttgaagaaaaataaactccccaaagccttcttctttcaatgtcatctatttctttcacttactcc 159  Q
    |||||||| | ||||||||||||||||| |  ||||||||| | || || | |||||||||||||||| ||||||||||    
T  31305849 gagggttttacattttgaagaaaaataagcctcccaaagccctttt-ttcctatgtcatctatttcttccacttactcc 31305926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 61
Target Start/End: Original strand, 31687407 - 31687441
Alignment:
Q  27 tttaggctctgtttggtaaaaataacggatagctg 61  Q
    |||||||||||||||||||||||| ||||||||||    
T  31687407 tttaggctctgtttggtaaaaatagcggatagctg 31687441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 61
Target Start/End: Original strand, 8435809 - 8435842
Alignment:
Q  28 ttaggctctgtttggtaaaaataacggatagctg 61  Q
    ||||||||||||||||||||||| ||||||||||    
T  8435809 ttaggctctgtttggtaaaaatagcggatagctg 8435842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 90 - 158
Target Start/End: Original strand, 7080366 - 7080434
Alignment:
Q  90 atattttgaagaaaaataaactccccaaagccttcttctttcaatgtcatctatttctttcacttactc 158  Q
    ||||||||||| ||||||||| |||||||||| ||| ||  |||| |||  |||||||| |||||||||    
T  7080366 atattttgaagcaaaataaaccccccaaagccctctcctcccaatatcaaatatttcttccacttactc 7080434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 61
Target Start/End: Complemental strand, 17116334 - 17116302
Alignment:
Q  29 taggctctgtttggtaaaaataacggatagctg 61  Q
    |||||||||||||||||||||| ||||||||||    
T  17116334 taggctctgtttggtaaaaatagcggatagctg 17116302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 61
Target Start/End: Complemental strand, 30338348 - 30338320
Alignment:
Q  33 ctctgtttggtaaaaataacggatagctg 61  Q
    |||||||||||||||||||||||||||||    
T  30338348 ctctgtttggtaaaaataacggatagctg 30338320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 41693370 - 41693402
Alignment:
Q  29 taggctctgtttggtaaaaataacggatagctg 61  Q
    |||||||||||||||||||||| ||||||||||    
T  41693370 taggctctgtttggtaaaaatagcggatagctg 41693402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 82792 - 82724
Alignment:
Q  91 tattttgaagaaaaataaactccccaaagccttcttctttcaatgtcatctatttctttcacttactcc 159  Q
    |||| ||||||||||||||| ||| |||||| | |||| |||| |||||||||||||| ||||| ||||    
T  82792 tattatgaagaaaaataaacccccgaaagcccttttctctcaaagtcatctatttcttccacttgctcc 82724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1526 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1526
Description:

Target: scaffold1526; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 61
Target Start/End: Original strand, 1360 - 1394
Alignment:
Q  27 tttaggctctgtttggtaaaaataacggatagctg 61  Q
    |||||||||||||||||||||||| ||||||||||    
T  1360 tttaggctctgtttggtaaaaatagcggatagctg 1394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 61
Target Start/End: Original strand, 9360 - 9394
Alignment:
Q  27 tttaggctctgtttggtaaaaataacggatagctg 61  Q
    |||||||||||||||||||||||| ||||||||||    
T  9360 tttaggctctgtttggtaaaaatagcggatagctg 9394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0173 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0173
Description:

Target: scaffold0173; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 61
Target Start/End: Original strand, 22220 - 22250
Alignment:
Q  31 ggctctgtttggtaaaaataacggatagctg 61  Q
    |||||||||||||||||||||||||||||||    
T  22220 ggctctgtttggtaaaaataacggatagctg 22250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 61
Target Start/End: Complemental strand, 25713 - 25680
Alignment:
Q  28 ttaggctctgtttggtaaaaataacggatagctg 61  Q
    ||||||||||||||||||||||| ||||||||||    
T  25713 ttaggctctgtttggtaaaaatagcggatagctg 25680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 61
Target Start/End: Original strand, 92840 - 92873
Alignment:
Q  28 ttaggctctgtttggtaaaaataacggatagctg 61  Q
    ||||||||||||||||||||||| ||||||||||    
T  92840 ttaggctctgtttggtaaaaatagcggatagctg 92873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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