View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5226-Insertion-3 (Length: 381)
Name: NF5226-Insertion-3
Description: NF5226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5226-Insertion-3 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 8 - 381
Target Start/End: Original strand, 14785040 - 14785416
Alignment:
| Q |
8 |
taataaagatcttagagtaaccatagattctcaattatatgattctc--ctttgtggaaagctttaacaggtatctgggatcaatttcagcaaaatattg |
105 |
Q |
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||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14785040 |
taataaagatcttagagaaaccatagattctcaatcatatgattctctcctttgtggaaagctttaacaggtatctgggatcaatttcagcaaaatattg |
14785139 |
T |
|
| Q |
106 |
tgtggtggctgagcaatggtaacaatattaatttttgggtggataaataaacttctagtggaacttccatcactaatcaaactagtattgacacaactct |
205 |
Q |
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|||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |
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| T |
14785140 |
tgtggtagctgagcaatgataacaatattaatttttggatggataaataaacttctactggaacttccatcactgatcaaactagtattgacacaactct |
14785239 |
T |
|
| Q |
206 |
atatgtgagggacgtggtaacctcctcagaagagtgggattataagttccttacttctaacttactatgtacatttgctttataggttcttgctat-cct |
304 |
Q |
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||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
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| T |
14785240 |
atatgcgagggatgtggtaacctcctaagaagagtgggattataagttccttacttctaacttactatgtacatttgctttacaggttcttgctatccct |
14785339 |
T |
|
| Q |
305 |
acacctatagaaacaaatgggtatgaaaatattggttagggaggaaccaacactagggatttcacaattcaacgtgc |
381 |
Q |
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|||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||| |||| |
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| T |
14785340 |
acacgtatagaaacaaatggatatgaaaatattggctagggaggaaccaacactagggatttcataattcaaagtgc |
14785416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 154; Significance: 1e-81; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 9 - 376
Target Start/End: Complemental strand, 48898956 - 48898579
Alignment:
| Q |
9 |
aataaagatcttagagtaaccatagattctcaattatatgattctcctttgtggaaagctttaacaggtatctgggatcaatttcagcaaaatattgtgt |
108 |
Q |
| |
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|||||||||||||| ||| ||||||||||| ||| ||||||||||||||| |||||||||||||||||| ||||| |||||||| ||||||||||||| |
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| T |
48898956 |
aataaagatcttagggtagccatagattctaaatcatatgattctcctttatggaaagctttaacaggttattgggaacaatttcaacaaaatattgtgt |
48898857 |
T |
|
| Q |
109 |
ggtggctgagcaatggtaacaatattaatttttgggtggataaataaacttctagtggaacttc---------catcactaatcaaactagtattgacac |
199 |
Q |
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|| | || || ||||||| ||||||||||||||| ||||||||| || ||||||||||||| ||| |||||||||| || ||||||||| |
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| T |
48898856 |
ggcagttgggcgatggtaataatattaatttttggatggataaatgggctcctagtggaacttctcttatgtccattactaatcaaaatattattgacac |
48898757 |
T |
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| Q |
200 |
aactctatatgtgagggacgtggtaacctcctcagaagagtgggattataagttccttacttctaacttactatgtacatttgctttataggttcttgct |
299 |
Q |
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|||||| |||||||||||||||||||| ||| || ||||||||||| ||| ||||||||||||||||||| | ||| ||||||||| ||||||||||| |
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| T |
48898756 |
aactctccatgtgagggacgtggtaaccccctaaggagagtgggattttaatttccttacttctaacttaccgtctacctttgctttacaggttcttgct |
48898657 |
T |
|
| Q |
300 |
at-cctacacctatagaaacaaatgggtatgaaaatattggttagggaggaaccaacactagggatttcacaattcaa |
376 |
Q |
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|| ||| |||||| ||| || |||| ||| |||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
48898656 |
atccctgcacctaaagacactgatggacttgacaatattggttggggaggaaccaacactagggatttcacaattcaa |
48898579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 171 - 286
Target Start/End: Complemental strand, 34184194 - 34184079
Alignment:
| Q |
171 |
tccatcactaatcaaactagtattgacacaactctatatgtgagggacgtggtaacctcctcagaagagtgggattataagttccttacttctaacttac |
270 |
Q |
| |
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|||||||||||||||| | | |||||||||| || ||||| | ||| ||||||||| | ||| ||| || |||||||| || ||||||||||||||| |
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| T |
34184194 |
tccatcactaatcaaaattatgttgacacaaccctctatgttaaggatgtggtaaccccttcaagagattgagattataattttattacttctaacttac |
34184095 |
T |
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| Q |
271 |
tatgtacatttgcttt |
286 |
Q |
| |
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|| ||| |||||||| |
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| T |
34184094 |
catttacctttgcttt |
34184079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 171 - 286
Target Start/End: Complemental strand, 34204783 - 34204668
Alignment:
| Q |
171 |
tccatcactaatcaaactagtattgacacaactctatatgtgagggacgtggtaacctcctcagaagagtgggattataagttccttacttctaacttac |
270 |
Q |
| |
|
|||||||||||||||| | | |||||||||| || ||||| | ||| ||||||||| | ||| ||| || |||||||| || ||||||||||||||| |
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| T |
34204783 |
tccatcactaatcaaaattatgttgacacaaccctctatgttaaggatgtggtaaccccttcaagagattgagattataattttattacttctaacttac |
34204684 |
T |
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| Q |
271 |
tatgtacatttgcttt |
286 |
Q |
| |
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|| ||| |||||||| |
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| T |
34204683 |
catttacctttgcttt |
34204668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 34184326 - 34184264
Alignment:
| Q |
48 |
gattctcctttgtggaaagctttaacaggtatctgggatcaatttcagcaaaatattgtgtgg |
110 |
Q |
| |
|
|||||||||||||||||||| ||| ||| || ||||| | ||||||||||||||||||||| |
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|
| T |
34184326 |
gattctcctttgtggaaagcattattaggcatttgggaaaattttcagcaaaatattgtgtgg |
34184264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 34204915 - 34204853
Alignment:
| Q |
48 |
gattctcctttgtggaaagctttaacaggtatctgggatcaatttcagcaaaatattgtgtgg |
110 |
Q |
| |
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|||||||||||||||||||| ||| ||| || ||||| | ||||||||||||||||||||| |
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| T |
34204915 |
gattctcctttgtggaaagcattattaggcatttgggaaaattttcagcaaaatattgtgtgg |
34204853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 124; Significance: 1e-63; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 44 - 373
Target Start/End: Original strand, 38061701 - 38062040
Alignment:
| Q |
44 |
atatgattctcctttgtggaaagctttaacaggtatctgggatcaatttcagcaaaatattgtgtggtggctgagcaatggtaacaatattaatttttgg |
143 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||| ||||| | |||||||||||||||||||||| | || || ||||||| |||||||||||||| |
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| T |
38061701 |
atatgattctcctttatggaaagctttaacatgtatttgggaacgatttcagcaaaatattgtgtggcagttgggcgatggtaataatattaatttttga |
38061800 |
T |
|
| Q |
144 |
gtggataaataaacttctagtggaacttc---------catcactaatcaaactagtattgacacaactctatatgtgagggacgtggtaacctcctcag |
234 |
Q |
| |
|
||||||||| || ||||||||||||| ||| ||||||||||||| |||||||| |||||| ||||||| ||||||| |||| |||||| |
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|
| T |
38061801 |
atggataaatgggctcctagtggaacttctcttatgtccattactaatcaaactattattgacataactctccatgtgagtgacgtggcaaccccctcag |
38061900 |
T |
|
| Q |
235 |
aagagtgggattataagttccttacttctaacttactatgtacatttgctttataggttcttgctat-cctacacctatagaaacaaatgggtatgaaaa |
333 |
Q |
| |
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||||||||||| ||| ||||||||||||||||||| | ||| ||||||||| |||||||| |||| ||| |||||| ||| || |||| ||| || |
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| T |
38061901 |
gagagtgggattttaatttccttacttctaacttaccgtctacctttgctttacaggttctttctatccctgcacctaaagacactgatggacttgacaa |
38062000 |
T |
|
| Q |
334 |
tattggttagggaggaaccaacactagggatttcacaatt |
373 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||| |
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| T |
38062001 |
tattggttggggaggaaccaacactagggatttcacaatt |
38062040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 9 - 269
Target Start/End: Complemental strand, 31116573 - 31116304
Alignment:
| Q |
9 |
aataaagatcttagagtaaccatagattctcaattatatgattctcctttgtggaaagctttaacaggtatctgggatcaatttcagcaaaatattgtgt |
108 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||| ||||||||| ||||||||||||||||||||| |||| |||||| ||||| ||||||||||||||| |
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|
| T |
31116573 |
aataaagatcttagggtaaccatagattctaaatcatatgattcccctttgtggaaagctttaacaagtatttgggattaatttaagcaaaatattgtgt |
31116474 |
T |
|
| Q |
109 |
ggtggctgagcaatggtaacaatattaatttttgggtggataaataaacttctagtggaacttc---------catcactaatcaaactagtattgacac |
199 |
Q |
| |
|
|| ||| ||||||||||||||||||| |||||| | ||||||| || | ||||||||||| ||||||||||||||| |||||| |||| |
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|
| T |
31116473 |
ggcagcttggcaatggtaacaatattaacttttggatcgataaatgtgctcccagtggaacttctcttatgttcatcactaatcaaacaagtatttacac |
31116374 |
T |
|
| Q |
200 |
aactctatatgtgagggacgtggtaacctcctcagaagagtgggattataagttccttacttctaactta |
269 |
Q |
| |
|
||||| ||||||||||||||||| ||| ||||| ||||||||| ||||| |||||||| ||||||||| |
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|
| T |
31116373 |
gactctccatgtgagggacgtggtagccttctcaggagagtgggactataatttccttacctctaactta |
31116304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 332 - 381
Target Start/End: Complemental strand, 31116262 - 31116213
Alignment:
| Q |
332 |
aatattggttagggaggaaccaacactagggatttcacaattcaacgtgc |
381 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||||| |||| |
|
|
| T |
31116262 |
aatattggttgcggtggaaccaacactagggatttcacaattcaaagtgc |
31116213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 271
Target Start/End: Original strand, 25660770 - 25660870
Alignment:
| Q |
171 |
tccatcactaatcaaactagtattgacacaactctatatgtgagggacgtggtaacctcctcagaagagtgggattataagttccttacttctaacttac |
270 |
Q |
| |
|
|||||||||||||| || | |||||||||||| | | ||| | ||| ||||||||| | |||| ||| ||||||||||| || |||||||||| |||| |
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|
| T |
25660770 |
tccatcactaatcagacaaatattgacacaaccttttctgttaaggatgtggtaaccccttcaggagattgggattataattttattacttctaagttac |
25660869 |
T |
|
| Q |
271 |
t |
271 |
Q |
| |
|
| |
|
|
| T |
25660870 |
t |
25660870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 271
Target Start/End: Original strand, 25667175 - 25667275
Alignment:
| Q |
171 |
tccatcactaatcaaactagtattgacacaactctatatgtgagggacgtggtaacctcctcagaagagtgggattataagttccttacttctaacttac |
270 |
Q |
| |
|
|||||||||||||| || | |||||||||||| | | ||| | ||| ||||||||| | |||| ||| ||||||||||| || |||||||||| |||| |
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| T |
25667175 |
tccatcactaatcagacaaatattgacacaaccttttctgttaaggatgtggtaaccccttcaggagattgggattataattttattacttctaagttac |
25667274 |
T |
|
| Q |
271 |
t |
271 |
Q |
| |
|
| |
|
|
| T |
25667275 |
t |
25667275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 271
Target Start/End: Original strand, 25673580 - 25673680
Alignment:
| Q |
171 |
tccatcactaatcaaactagtattgacacaactctatatgtgagggacgtggtaacctcctcagaagagtgggattataagttccttacttctaacttac |
270 |
Q |
| |
|
|||||||||||||| || | |||||||||||| | | ||| | ||| ||||||||| | |||| ||| ||||||||||| || |||||||||| |||| |
|
|
| T |
25673580 |
tccatcactaatcagacaaatattgacacaaccttttctgttaaggatgtggtaaccccttcaggagattgggattataattttattacttctaagttac |
25673679 |
T |
|
| Q |
271 |
t |
271 |
Q |
| |
|
| |
|
|
| T |
25673680 |
t |
25673680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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