View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5226-Insertion-4 (Length: 250)
Name: NF5226-Insertion-4
Description: NF5226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5226-Insertion-4 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0118 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 7 - 250
Target Start/End: Complemental strand, 13716811 - 13716567
Alignment:
| Q |
7 |
agtagaggaattttggacttggt-agcagaaataacttggttcccagccattgcttgtacgccgacgacattcttattatctgtaaagttaatattaata |
105 |
Q |
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| T |
13716811 |
agtagaggaattttggacttggttagcagaaataacttggttcccagccattgcttgtacgccgacgacattcttattatctgtaaagttaatataaata |
13716712 |
T |
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| Q |
106 |
atgtcaagcatatcatggaactttttgaaagctatggtagctattctggtcaaattatcaacaacattaaaagtacgttttattctaagtccatccctct |
205 |
Q |
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| T |
13716711 |
atgtcaagcatatcatggaactttttgaaagctatggtagctattctggtcaaattatcaacaacattaaaagtacgttttattctaagtccatccctct |
13716612 |
T |
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| Q |
206 |
ttctaggctttgtaccatagctggcctcactggttttaagcatgc |
250 |
Q |
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| T |
13716611 |
ttctaggctttgtaccatatctggcctcactggttttaagcatgc |
13716567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0118 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: scaffold0118
Description:
Target: scaffold0118; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 29 - 250
Target Start/End: Complemental strand, 36950 - 36729
Alignment:
| Q |
29 |
tagcagaaataacttggttcccagccattgcttgtacgccgacgacattcttattatctgtaaagttaatattaataatgtcaagcatatcatggaactt |
128 |
Q |
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|||||||| ||| |||||||||||||| ||||||||||||||||||||||||||| | ||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
36950 |
tagcagaagtaatttggttcccagccactgcttgtacgccgacgacattcttattttttgtaaaggtaatattgctaatgtcaagcatatcatggaactt |
36851 |
T |
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| Q |
129 |
tttgaaagctatggtagctattctggtcaaattatcaacaacattaaaagtacgttttattctaagtccatccctctttctaggctttgtaccatagctg |
228 |
Q |
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| T |
36850 |
tttgaaagttatggtagctattctggtcaaattgtcaacaacagtaaaagtaatttttattctgcgttcatcccgcattcttggctttgtgccatagctg |
36751 |
T |
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| Q |
229 |
gcctcactggttttaagcatgc |
250 |
Q |
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| T |
36750 |
gcctcaccggttttaagcatgc |
36729 |
T |
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