View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5226_high_17 (Length: 234)
Name: NF5226_high_17
Description: NF5226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5226_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 15 - 225
Target Start/End: Complemental strand, 40942635 - 40942425
Alignment:
| Q |
15 |
taatagaccaacataagtgggaagtatctgcatgattgatatagataataaaaccaagagcttgtcaaacttgtcacactgcaaatcgaaagtgcatcaa |
114 |
Q |
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| T |
40942635 |
taatagaccaccataagtgggaagtatctgcatgattgattgagataataaaaccaagagcttgtctaacttgtcacattgcaaatcgaaagggcatcaa |
40942536 |
T |
|
| Q |
115 |
gccattnnnnnnntaaactgcactaagaggatcaaagtatgctatcctttgctgtggttttttgggtgtcaaggttgcaagactattttaaagggaggtg |
214 |
Q |
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|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40942535 |
gccattaacaaaataaactgcactaagaggatcaaagtatgatatcctttgctgtggttttttgggtgtcaagattgcaagactattttaaagggaggtg |
40942436 |
T |
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| Q |
215 |
atgggtgatga |
225 |
Q |
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||||||||||| |
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| T |
40942435 |
atgggtgatga |
40942425 |
T |
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