View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5226_high_4 (Length: 497)
Name: NF5226_high_4
Description: NF5226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5226_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 19 - 489
Target Start/End: Complemental strand, 39681857 - 39681387
Alignment:
| Q |
19 |
gaaggagtgacagattccacaggaacatacaacataatggttgagaatgaccaccatgacaatatttgcaaaactgtgcttgttagcagcccgatatcat |
118 |
Q |
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| T |
39681857 |
gaaggagtgacagattccacaggaacatacaacataatggttgagaatgaccaccatgacaatatttgcaaaactgtgcttgttagcagcccaatatcat |
39681758 |
T |
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| Q |
119 |
cgtgtaatacacctgaccctgggcgtaacagatccagcattgtgctcactcactacaaaaatggtgtcctcaaccatcttcactatgcaaatgctatggg |
218 |
Q |
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| T |
39681757 |
cgtgtaatacacctgaccctgggcgtaacagatccagcattgtgctcactcactataaaaatggtgtcctcaaccatcttcactatgcaaatgctatggg |
39681658 |
T |
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| Q |
219 |
ttacttcaaggatgatcccctgcctcaatattgccatcaactccttaaatattacttgtctgattcagatgtttgatcagtaacaataatctgttctgtt |
318 |
Q |
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| T |
39681657 |
ttacttcaaggatgatcccttgcctcaatattgccatcaactccttaaatattacttgtctgattcagatgtttgatcagtaacaataatctgttctgtt |
39681558 |
T |
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| Q |
319 |
tgttatgttttattcactaattactatgacatgttttatttactagtgtttaagtatttgctgtgaacatcatagttggtactaagttctagttactatt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
39681557 |
tgttatgttttattcactaattactatgacatgttttatttactagtgtttaagtatttgttgtgaacatcatagttggtactaagttctagttactatt |
39681458 |
T |
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| Q |
419 |
tacaaatcagttttttcttcttctaagtaattaagccacttaattgtggtatatattgattatgatgatgt |
489 |
Q |
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| T |
39681457 |
tacaaatcagttttttcttcttctaagtaattaagccacttaattgtggtatatattgattataatgatgt |
39681387 |
T |
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