View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5226_low_1 (Length: 834)

Name: NF5226_low_1
Description: NF5226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5226_low_1
NF5226_low_1
[»] chr8 (7 HSPs)
chr8 (1-823)||(33750933-33751754)
chr8 (317-375)||(40521378-40521436)
chr8 (317-357)||(11061025-11061065)
chr8 (317-375)||(15623745-15623803)
chr8 (317-375)||(15647533-15647591)
chr8 (317-382)||(3720728-3720793)
chr8 (322-359)||(26628889-26628926)
[»] chr7 (2 HSPs)
chr7 (317-359)||(6737257-6737299)
chr7 (318-359)||(41480642-41480683)
[»] chr6 (7 HSPs)
chr6 (322-384)||(8235767-8235829)
chr6 (317-382)||(847844-847909)
chr6 (322-374)||(17942595-17942647)
chr6 (317-355)||(879312-879350)
chr6 (322-359)||(7761467-7761504)
chr6 (317-382)||(17251384-17251449)
chr6 (317-354)||(31244905-31244942)
[»] chr2 (8 HSPs)
chr2 (317-375)||(9370022-9370080)
chr2 (322-374)||(12969813-12969865)
chr2 (322-376)||(28110168-28110222)
chr2 (318-357)||(36917015-36917054)
chr2 (317-375)||(43077340-43077398)
chr2 (317-382)||(13849845-13849910)
chr2 (317-358)||(36447426-36447467)
chr2 (322-359)||(40756984-40757021)
[»] scaffold0054 (1 HSPs)
scaffold0054 (317-374)||(45605-45662)
[»] chr1 (5 HSPs)
chr1 (317-374)||(33082896-33082953)
chr1 (322-374)||(24771979-24772031)
chr1 (322-374)||(1837901-1837953)
chr1 (317-376)||(49756679-49756738)
chr1 (317-382)||(44818502-44818567)
[»] chr4 (8 HSPs)
chr4 (326-376)||(17038377-17038427)
chr4 (322-374)||(20249087-20249139)
chr4 (419-486)||(34284172-34284240)
chr4 (322-359)||(6129022-6129059)
chr4 (317-354)||(8735440-8735477)
chr4 (317-382)||(38617867-38617932)
chr4 (317-354)||(47251464-47251501)
chr4 (317-354)||(47596769-47596806)
[»] chr5 (6 HSPs)
chr5 (317-382)||(33239350-33239415)
chr5 (318-375)||(39893940-39893997)
chr5 (322-374)||(23097797-23097849)
chr5 (322-374)||(25683302-25683354)
chr5 (317-359)||(12305691-12305733)
chr5 (317-374)||(4985307-4985364)
[»] scaffold2146 (1 HSPs)
scaffold2146 (317-382)||(600-665)
[»] scaffold0025 (1 HSPs)
scaffold0025 (322-359)||(65238-65275)
[»] scaffold0009 (1 HSPs)
scaffold0009 (317-374)||(147264-147321)
[»] chr3 (4 HSPs)
chr3 (322-359)||(199022-199059)
chr3 (322-359)||(18355941-18355978)
chr3 (317-354)||(29698039-29698076)
chr3 (317-382)||(43159893-43159958)


Alignment Details
Target: chr8 (Bit Score: 637; Significance: 0; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 637; E-Value: 0
Query Start/End: Original strand, 1 - 823
Target Start/End: Original strand, 33750933 - 33751754
Alignment:
Q  1 gattcatgaatttgattctgcttcgaccaaagaggatattgagcagcattgttctgttcatcactgtcttcccaaaattgtgactaaaatggtgagtttc 100  Q
    |||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33750933 gattcatgaatttgattctgcttcaaacaaagaggattttgagcagcattgttctgttcatcactgtcttcccaaaattgtgactaaaatggtgaatttc 33751032  T
Q  101 agaatcagtaatttcattgggatggtttctatgtaacgtcctcttgaatattatctgtgnnnnnnn----atgtggcaggtgaatttgttaactgttaag 196  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||    
T  33751033 agaatcagtaatttcattgggatgctttctatgtaacgtcctcttgaatattatctgtgtttttttttttatgtggcaggtgaatttgttaactgttaag 33751132  T
Q  197 agtgaatttgtccaacatgttgctgttaatgctcttgtcttaacttcagaattcctgtctactacggtatgaattgaaatagtaccaattactctannnn 296  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||        
T  33751133 agtgaatttgttcaacatgttgctgttaatgctcttgtcttaacttcagaattcctgtctactacggtatgaa-----atagtaccaattactctatttt 33751227  T
Q  297 nnnnnnnnnnnnnnnnnnnncaaagttcaatgcaatattaattattgttttatcaataataccataaaatatttattgcatagagatacatgccttcaat 396  Q
                        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33751228 ttcatttttactttcattttcaaagttcaatgcaatattaattattgttttatcaataataccataaaatatttattgcatagagatacatgccttcaat 33751327  T
Q  397 tagggtgtcaggtgctgcaaagtaaataattaagggtattataggaaaaatgcaagtaactacatcaaaagtaacaaatttcttagttttttgatgtgta 496  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||    
T  33751328 tagggtgacaggtgctacaaagtaaataattaagggtattataggaaaaatgctagtaattacatcaaaattaacaaatttcttagttttttgatgtgta 33751427  T
Q  497 aataaacttaaaaccagacctaaaaagaaaggaatggaggaagcagtggttttgctgagtttaggttaatgtgtcatgcgtagtttatgattccctgcga 596  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33751428 aataaacttaaaaccagacctaaaaagaaaggaatggagggagcagtggttttgctgagtttaggttaatgtgtcatgcgtagtttatgattccctgcga 33751527  T
Q  597 tgattttcaggggaacaattgggctgaattcattcatttgttgtgctgttcattggaaacggcttttactagaatgctctcatgttcatttgaaaataat 696  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  33751528 tgattttcaggggaacagttgggctgaattcattcatttgttgtgctgttcattggaaacggcttttactagaatgctatcatgttcatttgaaaataat 33751627  T
Q  697 aacttggattctcgtgatgttgatttcatgctgcaacatgagctgaggaattgtgattggtcaaccgtggctggtatcgttaaagcgctgcgtgttatat 796  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33751628 aatttggattctcgtgatgttgatttcatgctgcaacatgagctgaggaattgtgattggtcaaccgtggctggtatcgttaaagcgctgcgtgttatat 33751727  T
Q  797 gtaaacatttgaaggaggactatgatg 823  Q
    |||||||||||||||||||||||||||    
T  33751728 gtaaacatttgaaggaggactatgatg 33751754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 317 - 375
Target Start/End: Complemental strand, 40521436 - 40521378
Alignment:
Q  317 caaagttcaatgcaatattaattattgttttatcaataataccataaaatatttattgc 375  Q
    ||||||||||||||||||||| | |||||||| ||||| |||| | |||||||||||||    
T  40521436 caaagttcaatgcaatattaaatgttgttttaccaatattacctttaaatatttattgc 40521378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 317 - 357
Target Start/End: Original strand, 11061025 - 11061065
Alignment:
Q  317 caaagttcaatgcaatattaattattgttttatcaataata 357  Q
    |||||||||||| |||||||||||||||||| |||||||||    
T  11061025 caaagttcaatgtaatattaattattgttttgtcaataata 11061065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 317 - 375
Target Start/End: Complemental strand, 15623803 - 15623745
Alignment:
Q  317 caaagttcaatgcaatattaattattgttttatcaataataccataaaatatttattgc 375  Q
    ||||||||||||||||||||| |  ||||||||||||| |||| | || ||||||||||    
T  15623803 caaagttcaatgcaatattaaatgatgttttatcaatattacccttaattatttattgc 15623745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 317 - 375
Target Start/End: Complemental strand, 15647591 - 15647533
Alignment:
Q  317 caaagttcaatgcaatattaattattgttttatcaataataccataaaatatttattgc 375  Q
    ||||||||||||||||||||| |  ||||||||||||| |||| | || ||||||||||    
T  15647591 caaagttcaatgcaatattaaatgatgttttatcaatattacccttaattatttattgc 15647533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 317 - 382
Target Start/End: Original strand, 3720728 - 3720793
Alignment:
Q  317 caaagttcaatgcaatattaattattgttttatcaataataccataaaatatttattgcatagaga 382  Q
    ||||||||||||||| ||||| | |||||||| ||||| |||  ||| |||||||||||| |||||    
T  3720728 caaagttcaatgcaacattaaatgttgttttaccaatattactctaagatatttattgcagagaga 3720793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 322 - 359
Target Start/End: Original strand, 26628889 - 26628926
Alignment:
Q  322 ttcaatgcaatattaattattgttttatcaataatacc 359  Q
    |||||||||| ||||||||||| |||||||||||||||    
T  26628889 ttcaatgcaacattaattattgatttatcaataatacc 26628926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 317 - 359
Target Start/End: Complemental strand, 6737299 - 6737257
Alignment:
Q  317 caaagttcaatgcaatattaattattgttttatcaataatacc 359  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  6737299 caaagttcaatgcaatattaattattgttttatcaataatacc 6737257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 318 - 359
Target Start/End: Complemental strand, 41480683 - 41480642
Alignment:
Q  318 aaagttcaatgcaatattaattattgttttatcaataatacc 359  Q
    |||||||||||||||||||| ||||||||| |||||||||||    
T  41480683 aaagttcaatgcaatattaactattgttttgtcaataatacc 41480642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 322 - 384
Target Start/End: Complemental strand, 8235829 - 8235767
Alignment:
Q  322 ttcaatgcaatattaattattgttttatcaataataccataaaatatttattgcatagagata 384  Q
    ||||||||||||||||||||||| |||||||||||||| | | |||||||||| | |||||||    
T  8235829 ttcaatgcaatattaattattgtcttatcaataatacccttacatatttattgtagagagata 8235767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 317 - 382
Target Start/End: Original strand, 847844 - 847909
Alignment:
Q  317 caaagttcaatgcaatattaattattgttttatcaataataccataaaatatttattgcatagaga 382  Q
    ||||||||||||||| ||||||||||| ||| ||||||||||  | ||||||||||| || |||||    
T  847844 caaagttcaatgcaacattaattattgctttgtcaataatactcttaaatatttattacaaagaga 847909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 322 - 374
Target Start/End: Complemental strand, 17942647 - 17942595
Alignment:
Q  322 ttcaatgcaatattaattattgttttatcaataataccataaaatatttattg 374  Q
    |||||||||| ||||||||||||||| ||||||||||| | | ||||||||||    
T  17942647 ttcaatgcaacattaattattgttttgtcaataatacccttacatatttattg 17942595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 317 - 355
Target Start/End: Original strand, 879312 - 879350
Alignment:
Q  317 caaagttcaatgcaatattaattattgttttatcaataa 355  Q
    ||||||||||||||| ||||||||||||||| |||||||    
T  879312 caaagttcaatgcaacattaattattgttttgtcaataa 879350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 322 - 359
Target Start/End: Complemental strand, 7761504 - 7761467
Alignment:
Q  322 ttcaatgcaatattaattattgttttatcaataatacc 359  Q
    ||||||||||||||||||||| |||| |||||||||||    
T  7761504 ttcaatgcaatattaattattattttgtcaataatacc 7761467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 317 - 382
Target Start/End: Complemental strand, 17251449 - 17251384
Alignment:
Q  317 caaagttcaatgcaatattaattattgttttatcaataataccataaaatatttattgcatagaga 382  Q
    ||||||||||||||| ||||| | |||||||| ||||| |||| | | |||||||||||| |||||    
T  17251449 caaagttcaatgcaacattaaatgttgttttaccaatattacccttagatatttattgcaaagaga 17251384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 317 - 354
Target Start/End: Complemental strand, 31244942 - 31244905
Alignment:
Q  317 caaagttcaatgcaatattaattattgttttatcaata 354  Q
    ||||||||||||||| ||||||| ||||||||||||||    
T  31244942 caaagttcaatgcaacattaattcttgttttatcaata 31244905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 317 - 375
Target Start/End: Original strand, 9370022 - 9370080
Alignment:
Q  317 caaagttcaatgcaatattaattattgttttatcaataataccataaaatatttattgc 375  Q
    ||||||||||||||||||||| | |||||||||||||| |||| | |||||||||||||    
T  9370022 caaagttcaatgcaatattaagtgttgttttatcaatattacccttaaatatttattgc 9370080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 322 - 374
Target Start/End: Original strand, 12969813 - 12969865
Alignment:
Q  322 ttcaatgcaatattaattattgttttatcaataataccataaaatatttattg 374  Q
    ||||||||||||||||||||||| || ||||||||||| | ||||||||||||    
T  12969813 ttcaatgcaatattaattattgtcttctcaataatacccttaaatatttattg 12969865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 322 - 376
Target Start/End: Original strand, 28110168 - 28110222
Alignment:
Q  322 ttcaatgcaatattaattattgttttatcaataataccataaaatatttattgca 376  Q
    |||||||||| ||||||||||| ||||||||||||||| | | ||||||||||||    
T  28110168 ttcaatgcaacattaattattggtttatcaataatacccttacatatttattgca 28110222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 318 - 357
Target Start/End: Complemental strand, 36917054 - 36917015
Alignment:
Q  318 aaagttcaatgcaatattaattattgttttatcaataata 357  Q
    |||||||||||||| ||||||||| |||||||||||||||    
T  36917054 aaagttcaatgcaacattaattatagttttatcaataata 36917015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 317 - 375
Target Start/End: Original strand, 43077340 - 43077398
Alignment:
Q  317 caaagttcaatgcaatattaattattgttttatcaataataccataaaatatttattgc 375  Q
    ||||||||||||||| ||||| |||||||||| ||||| |||| | | |||||||||||    
T  43077340 caaagttcaatgcaacattaaatattgttttaccaatattacccttagatatttattgc 43077398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 317 - 382
Target Start/End: Complemental strand, 13849910 - 13849845
Alignment:
Q  317 caaagttcaatgcaatattaattattgttttatcaataataccataaaatatttattgcatagaga 382  Q
    ||||||||||||||  ||||| | |||||||||||||| |||| | | |||||||||||| |||||    
T  13849910 caaagttcaatgcatcattaaatgttgttttatcaatattacctttagatatttattgcagagaga 13849845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 317 - 358
Target Start/End: Complemental strand, 36447467 - 36447426
Alignment:
Q  317 caaagttcaatgcaatattaattattgttttatcaataatac 358  Q
    |||| ||||||||||| |||||||||| ||||||||||||||    
T  36447467 caaatttcaatgcaatgttaattattggtttatcaataatac 36447426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 322 - 359
Target Start/End: Original strand, 40756984 - 40757021
Alignment:
Q  322 ttcaatgcaatattaattattgttttatcaataatacc 359  Q
    |||||||||| ||||||||||| |||||||||||||||    
T  40756984 ttcaatgcaacattaattattggtttatcaataatacc 40757021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 317 - 374
Target Start/End: Complemental strand, 45662 - 45605
Alignment:
Q  317 caaagttcaatgcaatattaattattgttttatcaataataccataaaatatttattg 374  Q
    |||| ||||||||||||||||||||||| |||||||||||| | | ||||||||||||    
T  45662 caaatttcaatgcaatattaattattgtattatcaataataaccttaaatatttattg 45605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 317 - 374
Target Start/End: Complemental strand, 33082953 - 33082896
Alignment:
Q  317 caaagttcaatgcaatattaattattgttttatcaataataccataaaatatttattg 374  Q
    |||| ||||||||||||||||||||||| || ||||||||||| | ||||||||||||    
T  33082953 caaatttcaatgcaatattaattattgtcttctcaataatacccttaaatatttattg 33082896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 322 - 374
Target Start/End: Original strand, 24771979 - 24772031
Alignment:
Q  322 ttcaatgcaatattaattattgttttatcaataataccataaaatatttattg 374  Q
    |||||||||||||||||||||||||| ||||||||| | | ||||||||||||    
T  24771979 ttcaatgcaatattaattattgttttttcaataatagccttaaatatttattg 24772031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 322 - 374
Target Start/End: Original strand, 1837901 - 1837953
Alignment:
Q  322 ttcaatgcaatattaattattgttttatcaataataccataaaatatttattg 374  Q
    |||||||||| ||||||||||| ||||||||||||||| |||  |||||||||    
T  1837901 ttcaatgcaacattaattattgatttatcaataataccctaatctatttattg 1837953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 317 - 376
Target Start/End: Original strand, 49756679 - 49756738
Alignment:
Q  317 caaagttcaatgcaatattaattattgttttatcaataataccataaaatatttattgca 376  Q
    ||||||||||||||| | ||||||||||||| ||||| ||||| | || |||||||||||    
T  49756679 caaagttcaatgcaacaataattattgttttgtcaattatacccttaagtatttattgca 49756738  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 317 - 382
Target Start/End: Original strand, 44818502 - 44818567
Alignment:
Q  317 caaagttcaatgcaatattaattattgttttatcaataataccataaaatatttattgcatagaga 382  Q
    ||||||||||||||| ||||| |||||||||| ||||| || | | |  |||||||||||||||||    
T  44818502 caaagttcaatgcaacattaaatattgttttaccaatattatccttagttatttattgcatagaga 44818567  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 326 - 376
Target Start/End: Original strand, 17038377 - 17038427
Alignment:
Q  326 atgcaatattaattattgttttatcaataataccataaaatatttattgca 376  Q
    |||||| |||||||||||| |||||||||||||||| || |||||||||||    
T  17038377 atgcaacattaattattgtcttatcaataataccattaagtatttattgca 17038427  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 322 - 374
Target Start/End: Original strand, 20249087 - 20249139
Alignment:
Q  322 ttcaatgcaatattaattattgttttatcaataataccataaaatatttattg 374  Q
    ||||||||||||||||||||||| || ||||||||||| | | ||||||||||    
T  20249087 ttcaatgcaatattaattattgtcttgtcaataatacccttacatatttattg 20249139  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 419 - 486
Target Start/End: Original strand, 34284172 - 34284240
Alignment:
Q  419 taaataattaagggtattataggaaaaatgcaagtaactacatcaaaagtaac-aaatttcttagtttt 486  Q
    |||||||||||||||||||||| |||||| ||| ||  | ||||||||||||| |||||| ||||||||    
T  34284172 taaataattaagggtattatagaaaaaatacaaatagtttcatcaaaagtaacaaaatttattagtttt 34284240  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 322 - 359
Target Start/End: Original strand, 6129022 - 6129059
Alignment:
Q  322 ttcaatgcaatattaattattgttttatcaataatacc 359  Q
    |||||||||| ||||||||||| |||||||||||||||    
T  6129022 ttcaatgcaacattaattattggtttatcaataatacc 6129059  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 317 - 354
Target Start/End: Original strand, 8735440 - 8735477
Alignment:
Q  317 caaagttcaatgcaatattaattattgttttatcaata 354  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  8735440 caaagttcaatgcaatattaaatattgttttaccaata 8735477  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 317 - 382
Target Start/End: Original strand, 38617867 - 38617932
Alignment:
Q  317 caaagttcaatgcaatattaattattgttttatcaataataccataaaatatttattgcatagaga 382  Q
    ||||||| ||||||| ||||| |||||||||||||||| || | | | |||||||||||| |||||    
T  38617867 caaagtttaatgcaacattaaatattgttttatcaatattatccttatatatttattgcagagaga 38617932  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 317 - 354
Target Start/End: Original strand, 47251464 - 47251501
Alignment:
Q  317 caaagttcaatgcaatattaattattgttttatcaata 354  Q
    ||||||||||||||||||||| | ||||||||||||||    
T  47251464 caaagttcaatgcaatattaaatgttgttttatcaata 47251501  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 317 - 354
Target Start/End: Complemental strand, 47596806 - 47596769
Alignment:
Q  317 caaagttcaatgcaatattaattattgttttatcaata 354  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  47596806 caaagttcaatgcaatattgagtattgttttatcaata 47596769  T

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Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 317 - 382
Target Start/End: Original strand, 33239350 - 33239415
Alignment:
Q  317 caaagttcaatgcaatattaattattgttttatcaataataccataaaatatttattgcatagaga 382  Q
    ||||||||||||||| ||||||| ||||||| ||||||| ||| | || ||||||||||| |||||    
T  33239350 caaagttcaatgcaacattaatttttgttttgtcaataacacctttaagtatttattgcaaagaga 33239415  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 318 - 375
Target Start/End: Complemental strand, 39893997 - 39893940
Alignment:
Q  318 aaagttcaatgcaatattaattattgttttatcaataataccataaaatatttattgc 375  Q
    |||||||||||||| ||||| |||||||||| ||||| |||| | |||||||||||||    
T  39893997 aaagttcaatgcaacattaaatattgttttaccaatattacccttaaatatttattgc 39893940  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 322 - 374
Target Start/End: Original strand, 23097797 - 23097849
Alignment:
Q  322 ttcaatgcaatattaattattgttttatcaataataccataaaatatttattg 374  Q
    ||||||||||||||||||||||| || ||||||||||| | | ||||||||||    
T  23097797 ttcaatgcaatattaattattgtcttgtcaataatacccttacatatttattg 23097849  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 322 - 374
Target Start/End: Original strand, 25683302 - 25683354
Alignment:
Q  322 ttcaatgcaatattaattattgttttatcaataataccataaaatatttattg 374  Q
    |||||||||| ||||||||||||||| ||||||||||| | | ||||||||||    
T  25683302 ttcaatgcaacattaattattgttttgtcaataatacccttacatatttattg 25683354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 317 - 359
Target Start/End: Complemental strand, 12305733 - 12305691
Alignment:
Q  317 caaagttcaatgcaatattaattattgttttatcaataatacc 359  Q
    ||||||||||||||| ||| ||||||||||| |||||||||||    
T  12305733 caaagttcaatgcaacattgattattgttttgtcaataatacc 12305691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 317 - 374
Target Start/End: Complemental strand, 4985364 - 4985307
Alignment:
Q  317 caaagttcaatgcaatattaattattgttttatcaataataccataaaatatttattg 374  Q
    ||||||||||||||| ||||| || ||||||||||||| |||| | || |||||||||    
T  4985364 caaagttcaatgcaacattaaataatgttttatcaatattacccttaattatttattg 4985307  T

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Target: scaffold2146 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold2146
Description:

Target: scaffold2146; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 317 - 382
Target Start/End: Original strand, 600 - 665
Alignment:
Q  317 caaagttcaatgcaatattaattattgttttatcaataataccataaaatatttattgcatagaga 382  Q
    ||||||||||||||||||||| | ||||||| |||||| |||| | || |||||||| || |||||    
T  600 caaagttcaatgcaatattaaatgttgttttttcaatattacccttaattatttattacaaagaga 665  T

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Target: scaffold0025 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 322 - 359
Target Start/End: Original strand, 65238 - 65275
Alignment:
Q  322 ttcaatgcaatattaattattgttttatcaataatacc 359  Q
    |||||||||||||||||||||| ||| |||||||||||    
T  65238 ttcaatgcaatattaattattggtttgtcaataatacc 65275  T

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Target: scaffold0009 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 317 - 374
Target Start/End: Complemental strand, 147321 - 147264
Alignment:
Q  317 caaagttcaatgcaatattaattattgttttatcaataataccataaaatatttattg 374  Q
    ||||||||||||||| ||||| | |||||||||||||| |||| | | ||||||||||    
T  147321 caaagttcaatgcaacattaaatgttgttttatcaatattacccttagatatttattg 147264  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 322 - 359
Target Start/End: Complemental strand, 199059 - 199022
Alignment:
Q  322 ttcaatgcaatattaattattgttttatcaataatacc 359  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  199059 ttcaatgcaacattaattattgttttgtcaataatacc 199022  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 322 - 359
Target Start/End: Original strand, 18355941 - 18355978
Alignment:
Q  322 ttcaatgcaatattaattattgttttatcaataatacc 359  Q
    |||||||||| ||||||||||| |||||||||||||||    
T  18355941 ttcaatgcaacattaattattgatttatcaataatacc 18355978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 317 - 354
Target Start/End: Original strand, 29698039 - 29698076
Alignment:
Q  317 caaagttcaatgcaatattaattattgttttatcaata 354  Q
    ||||||||||||||||||||| | ||||||||||||||    
T  29698039 caaagttcaatgcaatattaaatgttgttttatcaata 29698076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 317 - 382
Target Start/End: Complemental strand, 43159958 - 43159893
Alignment:
Q  317 caaagttcaatgcaatattaattattgttttatcaataataccataaaatatttattgcatagaga 382  Q
    |||| |||||||||| ||||| | ||| |||||||||| |||| | |||||||||||||| |||||    
T  43159958 caaaattcaatgcaacattaaatgttgatttatcaatattacccttaaatatttattgcagagaga 43159893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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