View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5226_low_10 (Length: 339)

Name: NF5226_low_10
Description: NF5226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5226_low_10
NF5226_low_10
[»] chr2 (16 HSPs)
chr2 (111-339)||(31456483-31456718)
chr2 (11-99)||(31456367-31456455)
chr2 (258-315)||(35447883-35447940)
chr2 (253-314)||(12668414-12668475)
chr2 (270-326)||(42832284-42832340)
chr2 (263-326)||(21091718-21091781)
chr2 (262-313)||(23406876-23406927)
chr2 (259-326)||(44860315-44860382)
chr2 (276-326)||(1327973-1328023)
chr2 (259-313)||(13273015-13273069)
chr2 (263-321)||(21616762-21616820)
chr2 (264-326)||(31808072-31808134)
chr2 (275-313)||(34331395-34331433)
chr2 (276-321)||(21782832-21782877)
chr2 (275-315)||(6290163-6290203)
chr2 (258-314)||(18622613-18622669)
[»] chr7 (21 HSPs)
chr7 (255-339)||(8160398-8160482)
chr7 (258-323)||(18013070-18013135)
chr7 (256-323)||(7758320-7758387)
chr7 (275-321)||(5235986-5236032)
chr7 (256-326)||(9778495-9778565)
chr7 (256-326)||(11890913-11890983)
chr7 (255-321)||(32308120-32308186)
chr7 (256-321)||(5548676-5548741)
chr7 (256-321)||(13770691-13770756)
chr7 (270-339)||(24146798-24146867)
chr7 (270-321)||(22484025-22484076)
chr7 (270-313)||(27732247-27732290)
chr7 (275-321)||(10377507-10377553)
chr7 (270-320)||(12278836-12278886)
chr7 (255-321)||(24339642-24339708)
chr7 (257-318)||(7328686-7328747)
chr7 (270-315)||(21880158-21880203)
chr7 (261-321)||(19992001-19992061)
chr7 (270-314)||(21140990-21141034)
chr7 (250-326)||(26033449-26033525)
chr7 (277-321)||(30813812-30813856)
[»] scaffold0008 (1 HSPs)
scaffold0008 (250-320)||(263360-263430)
[»] chr3 (16 HSPs)
chr3 (255-320)||(8039828-8039893)
chr3 (257-326)||(11313795-11313864)
chr3 (250-314)||(9800047-9800111)
chr3 (270-321)||(8383257-8383308)
chr3 (258-313)||(16789020-16789075)
chr3 (275-326)||(7614428-7614479)
chr3 (255-314)||(14209120-14209179)
chr3 (256-315)||(25948881-25948940)
chr3 (276-326)||(11251973-11252023)
chr3 (258-320)||(30994878-30994940)
chr3 (270-323)||(34307788-34307841)
chr3 (275-327)||(9624635-9624687)
chr3 (270-313)||(15505798-15505842)
chr3 (250-326)||(16192738-16192814)
chr3 (270-314)||(17005627-17005671)
chr3 (270-322)||(21256994-21257046)
[»] chr6 (19 HSPs)
chr6 (255-321)||(7723243-7723309)
chr6 (256-321)||(12696324-12696389)
chr6 (270-323)||(32511674-32511727)
chr6 (258-321)||(9025490-9025553)
chr6 (275-321)||(7996391-7996437)
chr6 (275-321)||(8022364-8022410)
chr6 (275-320)||(8389485-8389530)
chr6 (270-311)||(17411876-17411917)
chr6 (250-321)||(8931590-8931661)
chr6 (270-313)||(14721249-14721292)
chr6 (217-321)||(16766697-16766797)
chr6 (275-321)||(9658879-9658925)
chr6 (257-315)||(20576628-20576686)
chr6 (255-321)||(26562689-26562755)
chr6 (256-313)||(34895028-34895085)
chr6 (217-314)||(9522898-9522991)
chr6 (270-326)||(28715290-28715346)
chr6 (275-327)||(33817943-33817995)
chr6 (259-307)||(34197125-34197173)
[»] chr8 (12 HSPs)
chr8 (270-339)||(40332173-40332242)
chr8 (270-326)||(11803254-11803310)
chr8 (257-321)||(14634136-14634200)
chr8 (258-339)||(21465394-21465475)
chr8 (270-321)||(12606837-12606888)
chr8 (259-326)||(25566836-25566903)
chr8 (262-316)||(3025556-3025610)
chr8 (255-321)||(22651976-22652042)
chr8 (255-321)||(24362195-24362261)
chr8 (275-321)||(29776036-29776082)
chr8 (270-339)||(14731694-14731763)
chr8 (270-322)||(12570516-12570568)
[»] chr1 (22 HSPs)
chr1 (270-315)||(8010295-8010340)
chr1 (257-321)||(5376495-5376559)
chr1 (255-315)||(21038089-21038149)
chr1 (256-323)||(1486703-1486770)
chr1 (256-319)||(34712377-34712440)
chr1 (257-321)||(113299-113363)
chr1 (258-314)||(7918207-7918263)
chr1 (257-321)||(9629895-9629959)
chr1 (255-311)||(25361896-25361952)
chr1 (270-314)||(35999330-35999374)
chr1 (270-321)||(13436458-13436509)
chr1 (255-326)||(17754306-17754377)
chr1 (270-313)||(22907347-22907390)
chr1 (255-326)||(38503315-38503386)
chr1 (275-326)||(40181866-40181917)
chr1 (275-313)||(28674808-28674846)
chr1 (297-339)||(29229443-29229485)
chr1 (255-313)||(47989505-47989563)
chr1 (270-323)||(39130775-39130828)
chr1 (270-326)||(52284697-52284754)
chr1 (257-313)||(6612166-6612222)
chr1 (255-311)||(44482240-44482296)
[»] scaffold0049 (1 HSPs)
scaffold0049 (255-311)||(56932-56988)
[»] chr5 (16 HSPs)
chr5 (250-322)||(25817494-25817566)
chr5 (255-323)||(39698539-39698607)
chr5 (259-326)||(6471886-6471953)
chr5 (262-323)||(32630735-32630796)
chr5 (257-321)||(15410443-15410507)
chr5 (255-323)||(22423805-22423873)
chr5 (217-321)||(18592073-18592173)
chr5 (270-313)||(25863212-25863255)
chr5 (258-321)||(39205880-39205943)
chr5 (270-321)||(43001800-43001851)
chr5 (288-326)||(2236811-2236848)
chr5 (210-313)||(12641682-12641781)
chr5 (254-320)||(25888285-25888353)
chr5 (259-320)||(36838544-36838605)
chr5 (277-321)||(27932235-27932279)
chr5 (270-326)||(41091265-41091321)
[»] scaffold0122 (1 HSPs)
scaffold0122 (258-321)||(8666-8729)
[»] chr4 (19 HSPs)
chr4 (255-326)||(51701253-51701324)
chr4 (276-321)||(56257933-56257978)
chr4 (270-322)||(1213229-1213280)
chr4 (258-318)||(30838213-30838273)
chr4 (270-321)||(26504307-26504358)
chr4 (275-314)||(37698719-37698758)
chr4 (275-314)||(49652985-49653024)
chr4 (272-326)||(35161031-35161085)
chr4 (257-319)||(35952612-35952674)
chr4 (269-339)||(37203246-37203316)
chr4 (270-315)||(847957-848002)
chr4 (256-321)||(3947760-3947825)
chr4 (270-339)||(7727967-7728036)
chr4 (258-315)||(11596348-11596405)
chr4 (276-313)||(20179364-20179401)
chr4 (250-315)||(30982866-30982931)
chr4 (257-321)||(13134450-13134514)
chr4 (256-320)||(15659754-15659818)
chr4 (269-313)||(55941010-55941054)
[»] scaffold0223 (1 HSPs)
scaffold0223 (255-321)||(20172-20238)
[»] scaffold0123 (1 HSPs)
scaffold0123 (192-323)||(44459-44586)
[»] scaffold0024 (1 HSPs)
scaffold0024 (255-313)||(68235-68293)
[»] scaffold0020 (1 HSPs)
scaffold0020 (258-326)||(135308-135376)
[»] scaffold1528 (1 HSPs)
scaffold1528 (255-326)||(1030-1101)
[»] scaffold0722 (1 HSPs)
scaffold0722 (262-321)||(7032-7091)
[»] scaffold0136 (1 HSPs)
scaffold0136 (217-313)||(3808-3900)
[»] scaffold0004 (1 HSPs)
scaffold0004 (270-321)||(92807-92858)
[»] scaffold0044 (1 HSPs)
scaffold0044 (255-312)||(53189-53246)


Alignment Details
Target: chr2 (Bit Score: 109; Significance: 8e-55; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 111 - 339
Target Start/End: Original strand, 31456483 - 31456718
Alignment:
Q  111 atattaaggtcaactttattgtacacaaatatgatatataagtcttgtatcatttacaaattagttttatcatagatctat-aagcacagatacttctcc 209  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||| || | || |||    
T  31456483 atattaaggtcaactttattgtacacaaatgtgatatataagtcttgtatcatttataaattagtttcatcatagatctatgaagcacggacatttttcc 31456582  T
Q  210 aattaaacgtgtctcgatgtcgaacacgtgttgtatccaactgataccg------acacgacacttacacttataattatactgaattatataattttct 303  Q
     ||||  | |||||||||||||||||||||| |||| | || || ||||      |||||| ||| | ||||||||||| ||||||||| ||||||||||    
T  31456583 gattaggcatgtctcgatgtcgaacacgtgtcgtattcgaccgacaccgacacctacacgaaactgatacttataattacactgaattacataattttct 31456682  T
Q  304 taaattattagcagtgtcagtgttgtgtccggtgtc 339  Q
    |||||||||||| |||||||||| |||||| |||||    
T  31456683 taaattattagcggtgtcagtgtcgtgtccagtgtc 31456718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 31456367 - 31456455
Alignment:
Q  11 atcatcataaattagaataataaaaaatttgtttgatcaaaggaaaaatattaaagcacttgcttttgtgactatgtatagatcaatgc 99  Q
    ||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  31456367 atcatcataaattagaataataaaaaaattgtttaatcaagggaaaaatattaaagaacttgcttttgtgactatgtatagatcaatgc 31456455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 258 - 315
Target Start/End: Original strand, 35447883 - 35447940
Alignment:
Q  258 gacacgacacttacacttataattatactgaattatataattttcttaaattattagc 315  Q
    ||||||||||  ||||||||| |||||||||||||| |||||||||| ||||||||||    
T  35447883 gacacgacacaaacacttatagttatactgaattatgtaattttctttaattattagc 35447940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 314
Target Start/End: Original strand, 12668414 - 12668475
Alignment:
Q  253 ataccgacacgacacttacacttataattatactgaattatataattttcttaaattattag 314  Q
    |||||||||||||||  ||||||||||||| |||||||||| | ||||| | ||||||||||    
T  12668414 ataccgacacgacaccgacacttataattacactgaattatgtcattttttcaaattattag 12668475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 326
Target Start/End: Original strand, 42832284 - 42832340
Alignment:
Q  270 acacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 326  Q
    ||||||||||||| |||||| ||| ||||||||| ||||||||||| ||||| ||||    
T  42832284 acacttataattacactgaaatatgtaattttctcaaattattagcggtgtcggtgt 42832340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 263 - 326
Target Start/End: Complemental strand, 21091781 - 21091718
Alignment:
Q  263 gacacttacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 326  Q
    |||||| |||||| |||||| |||||| ||| | ||||||||||||||||||| ||||| ||||    
T  21091781 gacactgacacttgtaattacactgaagtatgttattttcttaaattattagcggtgtcggtgt 21091718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 262 - 313
Target Start/End: Complemental strand, 23406927 - 23406876
Alignment:
Q  262 cgacacttacacttataattatactgaattatataattttcttaaattatta 313  Q
    ||||||| |||| ||| ||||| ||||||||| |||||||||||||||||||    
T  23406927 cgacactgacacctatgattattctgaattatgtaattttcttaaattatta 23406876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 259 - 326
Target Start/End: Complemental strand, 44860382 - 44860315
Alignment:
Q  259 acacgacacttacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 326  Q
    |||||||||  |||| |||||||| ||||||||||   ||||||| ||||||||||| ||||||||||    
T  44860382 acacgacaccgacacatataattacactgaattatgcgattttctcaaattattagcggtgtcagtgt 44860315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 326
Target Start/End: Complemental strand, 1328023 - 1327973
Alignment:
Q  276 ataattatactgaattatataattttcttaaattattagcagtgtcagtgt 326  Q
    |||||||||||||||| ||| ||||||| ||||||||||| ||||| ||||    
T  1328023 ataattatactgaattttatgattttctcaaattattagcggtgtcggtgt 1327973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 313
Target Start/End: Original strand, 13273015 - 13273069
Alignment:
Q  259 acacgacacttacacttataattatactgaattatataattttcttaaattatta 313  Q
    |||||||||| ||| ||||||||| | |||||||||||||||||| |||| ||||    
T  13273015 acacgacactgacatttataattagattgaattatataattttctcaaatgatta 13273069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 321
Target Start/End: Complemental strand, 21616820 - 21616762
Alignment:
Q  263 gacacttacacttataattatactgaattatataattttcttaaattattagcagtgtc 321  Q
    ||||| ||||| |||||||| |||||||||| | ||||||| ||||||||||| |||||    
T  21616820 gacacgtacacatataattacactgaattatgtgattttctcaaattattagcggtgtc 21616762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 326
Target Start/End: Complemental strand, 31808134 - 31808072
Alignment:
Q  264 acacttacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 326  Q
    ||||| |||| |||||||| |||||||||| | ||||| ||||||||||||| ||||| ||||    
T  31808134 acactgacacatataattacactgaattatgtgattttgttaaattattagcggtgtcggtgt 31808072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 313
Target Start/End: Complemental strand, 34331433 - 34331395
Alignment:
Q  275 tataattatactgaattatataattttcttaaattatta 313  Q
    |||||||||| | ||||||||||||||||||||||||||    
T  34331433 tataattatatttaattatataattttcttaaattatta 34331395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 321
Target Start/End: Original strand, 21782832 - 21782877
Alignment:
Q  276 ataattatactgaattatataattttcttaaattattagcagtgtc 321  Q
    ||||||| |||||||||| | ||||||| |||||||||||||||||    
T  21782832 ataattacactgaattatgtgattttctcaaattattagcagtgtc 21782877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 315
Target Start/End: Complemental strand, 6290203 - 6290163
Alignment:
Q  275 tataattatactgaattatataattttcttaaattattagc 315  Q
    |||||||||||| || ||||||||||| |||||||||||||    
T  6290203 tataattatactaaaatatataatttttttaaattattagc 6290163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 314
Target Start/End: Complemental strand, 18622669 - 18622613
Alignment:
Q  258 gacacgacacttacacttataattatactgaattatataattttcttaaattattag 314  Q
    ||||||||||  |||| |||||||| |||||||||| | ||||| ||||||||||||    
T  18622669 gacacgacaccaacacgtataattacactgaattatgtgattttattaaattattag 18622613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 255 - 339
Target Start/End: Complemental strand, 8160482 - 8160398
Alignment:
Q  255 accgacacgacacttacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgttgtgtccggtgtc 339  Q
    |||||||||| ||  |||| |||||||| ||| |||||| ||||||||||||||||||||| |||||||||| |||| |||||||    
T  8160482 accgacacgataccaacacatataattacactaaattatgtaattttcttaaattattagcggtgtcagtgtcgtgttcggtgtc 8160398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 258 - 323
Target Start/End: Original strand, 18013070 - 18013135
Alignment:
Q  258 gacacgacacttacacttataattatactgaattatataattttcttaaattattagcagtgtcag 323  Q
    ||||||||||| |||| |||||||| |||||||||| ||||||| |||||||||||| ||||||||    
T  18013070 gacacgacactgacacatataattacactgaattatgtaatttttttaaattattagtagtgtcag 18013135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 256 - 323
Target Start/End: Complemental strand, 7758387 - 7758320
Alignment:
Q  256 ccgacacgacacttacacttataattatactgaattatataattttcttaaattattagcagtgtcag 323  Q
    ||||||||||||  ||||  |||||||||||||||||||||||||||| ||||||||||  |||||||    
T  7758387 ccgacacgacaccgacacacataattatactgaattatataattttctaaaattattagtggtgtcag 7758320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 275 - 321
Target Start/End: Complemental strand, 5236032 - 5235986
Alignment:
Q  275 tataattatactgaattatataattttcttaaattattagcagtgtc 321  Q
    |||||||| ||| |||||||||||||||||||||||||||| |||||    
T  5236032 tataattacactaaattatataattttcttaaattattagcggtgtc 5235986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 326
Target Start/End: Complemental strand, 9778565 - 9778495
Alignment:
Q  256 ccgacacgacacttacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 326  Q
    ||||||||||||  |||||| ||||||||||||||||| | ||||| | ||||||| ||| ||||||||||    
T  9778565 ccgacacgacaccgacacttgtaattatactgaattatgtgattttttcaaattatcagctgtgtcagtgt 9778495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 326
Target Start/End: Original strand, 11890913 - 11890983
Alignment:
Q  256 ccgacacgacacttacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 326  Q
    |||||||||||| |||||| ||||||| |||||||||||| ||||| | ||||||||| | || |||||||    
T  11890913 ccgacacgacacctacactcataattacactgaattatatgattttttcaaattattaaccgtatcagtgt 11890983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 321
Target Start/End: Complemental strand, 32308186 - 32308120
Alignment:
Q  255 accgacacgacacttacacttataattatactgaattatataattttcttaaattattagcagtgtc 321  Q
    |||||||||||||| |||| || ||||| |||||||||| | ||||||| ||||||||||| |||||    
T  32308186 accgacacgacactgacacatacaattacactgaattatgtgattttctcaaattattagcggtgtc 32308120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 256 - 321
Target Start/End: Complemental strand, 5548741 - 5548676
Alignment:
Q  256 ccgacacgacacttacacttataattatactgaattatataattttcttaaattattagcagtgtc 321  Q
    ||||||||||||| |||| |||||||| |||||||||| | ||||||| ||||||| ||| |||||    
T  5548741 ccgacacgacactgacacatataattacactgaattatttgattttctcaaattatcagcggtgtc 5548676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 256 - 321
Target Start/End: Complemental strand, 13770756 - 13770691
Alignment:
Q  256 ccgacacgacacttacacttataattatactgaattatataattttcttaaattattagcagtgtc 321  Q
    |||||||||||   |||||| |||||| |||||||||| ||||||| ||||||||||||| |||||    
T  13770756 ccgacacgacaacgacacttgtaattacactgaattatgtaatttttttaaattattagctgtgtc 13770691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 339
Target Start/End: Complemental strand, 24146867 - 24146798
Alignment:
Q  270 acacttataattatactgaattatataattttcttaaattattagcagtgtcagtgttgtgtccggtgtc 339  Q
    |||| |||||||||| |||||||| | ||||||| |||||||||||| |||| ||||  |||||||||||    
T  24146867 acacatataattatattgaattatgtgattttctaaaattattagcattgtcggtgtgatgtccggtgtc 24146798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 270 - 321
Target Start/End: Complemental strand, 22484076 - 22484025
Alignment:
Q  270 acacttataattatactgaattatataattttcttaaattattagcagtgtc 321  Q
    |||| |||||||||||||||||||  |||||||| ||||||||||| |||||    
T  22484076 acacatataattatactgaattatgcaattttctaaaattattagcggtgtc 22484025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 270 - 313
Target Start/End: Original strand, 27732247 - 27732290
Alignment:
Q  270 acacttataattatactgaattatataattttcttaaattatta 313  Q
    |||| |||||||| |||||||||| |||||||||||||||||||    
T  27732247 acacatataattacactgaattatgtaattttcttaaattatta 27732290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 321
Target Start/End: Complemental strand, 10377553 - 10377507
Alignment:
Q  275 tataattatactgaattatataattttcttaaattattagcagtgtc 321  Q
    |||||||| |||||||||||| ||||||||| ||||||| |||||||    
T  10377553 tataattacactgaattatatgattttcttatattattaacagtgtc 10377507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 320
Target Start/End: Complemental strand, 12278886 - 12278836
Alignment:
Q  270 acacttataattatactgaattatataattttcttaaattattagcagtgt 320  Q
    |||| |||||||| |||||||||| | ||||||||||||||||| ||||||    
T  12278886 acacatataattacactgaattatgtcattttcttaaattattatcagtgt 12278836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 321
Target Start/End: Complemental strand, 24339708 - 24339642
Alignment:
Q  255 accgacacgacacttacacttataattatactgaattatataattttcttaaattattagcagtgtc 321  Q
    |||||||||||||  |||||| |||||| |||||||||| | ||||| | ||||||||||| |||||    
T  24339708 accgacacgacaccgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtc 24339642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 318
Target Start/End: Original strand, 7328686 - 7328747
Alignment:
Q  257 cgacacgacacttacacttataattatactgaattatataattttcttaaattattagcagt 318  Q
    |||||||||||  |||| |||||||| ||| |||||| | ||||||| ||||||||||||||    
T  7328686 cgacacgacaccgacacatataattacactaaattatgttattttctcaaattattagcagt 7328747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 315
Target Start/End: Complemental strand, 21880203 - 21880158
Alignment:
Q  270 acacttataattatactgaattatataattttcttaaattattagc 315  Q
    |||||| |||||| |||||||||| ||||||||| |||||||||||    
T  21880203 acacttgtaattacactgaattatgtaattttctcaaattattagc 21880158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 321
Target Start/End: Complemental strand, 19992061 - 19992001
Alignment:
Q  261 acgacacttacacttataattatactgaattatataattttcttaaattattagcagtgtc 321  Q
    |||||||  ||||||||||||| |||||| ||| | ||||||| ||||||||||| |||||    
T  19992061 acgacaccgacacttataattacactgaaatatgtgattttctcaaattattagctgtgtc 19992001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 314
Target Start/End: Original strand, 21140990 - 21141034
Alignment:
Q  270 acacttataattatactgaattatataattttcttaaattattag 314  Q
    |||| |||||| | |||||||||||| ||||||||||||||||||    
T  21140990 acacctataatcacactgaattatatgattttcttaaattattag 21141034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 326
Target Start/End: Original strand, 26033449 - 26033525
Alignment:
Q  250 ctgataccgacacgacacttacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 326  Q
    |||| |||||||||| ||  |||||| |||||| |||||||||| | ||||| | ||||||||||| | ||||||||    
T  26033449 ctgacaccgacacgagaccgacacttgtaattacactgaattatgtgattttttcaaattattagctgcgtcagtgt 26033525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 321
Target Start/End: Complemental strand, 30813856 - 30813812
Alignment:
Q  277 taattatactgaattatataattttcttaaattattagcagtgtc 321  Q
    |||||| |||||||||| ||||||||| |||||||||||| ||||    
T  30813856 taattacactgaattatgtaattttctcaaattattagcaatgtc 30813812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 250 - 320
Target Start/End: Original strand, 263360 - 263430
Alignment:
Q  250 ctgataccgacacgacacttacacttataattatactgaattatataattttcttaaattattagcagtgt 320  Q
    |||| |||||||||||||| ||||||||||||| |||||||||| |  |||||| ||||||||||||||||    
T  263360 ctgacaccgacacgacactgacacttataattacactgaattatgtggttttctcaaattattagcagtgt 263430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 255 - 320
Target Start/End: Original strand, 8039828 - 8039893
Alignment:
Q  255 accgacacgacacttacacttataattatactgaattatataattttcttaaattattagcagtgt 320  Q
    |||||||||||||  |||| |||||||| |||||||||||||||||||| ||||||||||| ||||    
T  8039828 accgacacgacaccgacacatataattacactgaattatataattttctcaaattattagcggtgt 8039893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 257 - 326
Target Start/End: Original strand, 11313795 - 11313864
Alignment:
Q  257 cgacacgacacttacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 326  Q
    |||||||||||| |||| |||||||| ||| |||||| | ||||||| ||||||||||||||||| ||||    
T  11313795 cgacacgacactaacacatataattacactaaattatgtgattttctcaaattattagcagtgtcggtgt 11313864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 250 - 314
Target Start/End: Complemental strand, 9800111 - 9800047
Alignment:
Q  250 ctgataccgacacgacacttacacttataattatactgaattatataattttcttaaattattag 314  Q
    ||||||||||||||||||  ||||||| ||||| || ||||||| ||||||||| ||||||||||    
T  9800111 ctgataccgacacgacaccgacacttacaattacacggaattatgtaattttctcaaattattag 9800047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 270 - 321
Target Start/End: Complemental strand, 8383308 - 8383257
Alignment:
Q  270 acacttataattatactgaattatataattttcttaaattattagcagtgtc 321  Q
    ||||||||||||| |||||||||||| ||||||| ||||||||||| |||||    
T  8383308 acacttataattacactgaattatatgattttctcaaattattagcggtgtc 8383257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 258 - 313
Target Start/End: Complemental strand, 16789075 - 16789020
Alignment:
Q  258 gacacgacacttacacttataattatactgaattatataattttcttaaattatta 313  Q
    ||||||||||  ||||||||||||| |||||||||||| ||||| |||||||||||    
T  16789075 gacacgacaccaacacttataattacactgaattatatgatttttttaaattatta 16789020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 275 - 326
Target Start/End: Original strand, 7614428 - 7614479
Alignment:
Q  275 tataattatactgaattatataattttcttaaattattagcagtgtcagtgt 326  Q
    ||||||||||||||||||| | ||||||||||||||||| | ||||| ||||    
T  7614428 tataattatactgaattatgtgattttcttaaattattaactgtgtcggtgt 7614479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 255 - 314
Target Start/End: Complemental strand, 14209179 - 14209120
Alignment:
Q  255 accgacacgacacttacacttataattatactgaattatataattttcttaaattattag 314  Q
    |||||||||||||| |||||| |||||| |||||||||| | ||||| | ||||||||||    
T  14209179 accgacacgacactgacacttgtaattacactgaattatgtgattttttaaaattattag 14209120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 256 - 315
Target Start/End: Original strand, 25948881 - 25948940
Alignment:
Q  256 ccgacacgacacttacacttataattatactgaattatataattttcttaaattattagc 315  Q
    ||||||||||||  ||||||||||||| |||||||||| | ||||| | |||||||||||    
T  25948881 ccgacacgacaccaacacttataattacactgaattatgtgattttttcaaattattagc 25948940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 326
Target Start/End: Complemental strand, 11252023 - 11251973
Alignment:
Q  276 ataattatactgaattatataattttcttaaattattagcagtgtcagtgt 326  Q
    ||||||| |||||||||| | ||||||| |||||||||||| |||||||||    
T  11252023 ataattacactgaattatgtgattttctcaaattattagcaatgtcagtgt 11251973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 320
Target Start/End: Original strand, 30994878 - 30994940
Alignment:
Q  258 gacacgacacttacacttataattatactgaattatataattttcttaaattattagcagtgt 320  Q
    ||||| ||||| | || |||||||| |||||||| | | ||||||||||||||||||||||||    
T  30994878 gacacaacactgatacgtataattacactgaattgtgtgattttcttaaattattagcagtgt 30994940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 323
Target Start/End: Original strand, 34307788 - 34307841
Alignment:
Q  270 acacttataattatactgaattatataattttcttaaattattagcagtgtcag 323  Q
    ||||||||||||| |||||| ||| | ||||||| ||||||||||| |||||||    
T  34307788 acacttataattacactgaaatatgtgattttctcaaattattagcggtgtcag 34307841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 327
Target Start/End: Complemental strand, 9624687 - 9624635
Alignment:
Q  275 tataattatactgaattatataattttcttaaattattagcagtgtcagtgtt 327  Q
    |||||||| | |||||||| | ||||||| |||||||||||||||||| ||||    
T  9624687 tataattacattgaattatgtgattttctcaaattattagcagtgtcactgtt 9624635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 313
Target Start/End: Original strand, 15505798 - 15505842
Alignment:
Q  270 acacttataattatactgaattatataa-ttttcttaaattatta 313  Q
    ||||||||||||| |||||||||||||| |||| |||||||||||    
T  15505798 acacttataattacactgaattatataattttttttaaattatta 15505842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 326
Target Start/End: Original strand, 16192738 - 16192814
Alignment:
Q  250 ctgataccgacacgacacttacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 326  Q
    |||| ||||||||||||   |||| |||||||| |||||||||| | ||||||| ||||||||| | ||||| ||||    
T  16192738 ctgacaccgacacgacatcaacacatataattacactgaattatgttattttctcaaattattaacggtgtcggtgt 16192814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 314
Target Start/End: Original strand, 17005627 - 17005671
Alignment:
Q  270 acacttataattatactgaattatataattttcttaaattattag 314  Q
    ||||||||||||| |||||||||||| ||||| | ||||||||||    
T  17005627 acacttataattacactgaattatatgattttatcaaattattag 17005671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 322
Target Start/End: Original strand, 21256994 - 21257046
Alignment:
Q  270 acacttataattatactgaattatataattttcttaaattattagcagtgtca 322  Q
    |||||| ||||||||||||||||| | ||||| | ||||||||||| ||||||    
T  21256994 acacttgtaattatactgaattatgtgattttttcaaattattagctgtgtca 21257046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 255 - 321
Target Start/End: Original strand, 7723243 - 7723309
Alignment:
Q  255 accgacacgacacttacacttataattatactgaattatataattttcttaaattattagcagtgtc 321  Q
    |||||||||||||  | || ||||||||| ||||||||||| ||||||| |||||||||||||||||    
T  7723243 accgacacgacaccgatacatataattatgctgaattatatgattttctcaaattattagcagtgtc 7723309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 256 - 321
Target Start/End: Complemental strand, 12696389 - 12696324
Alignment:
Q  256 ccgacacgacacttacacttataattatactgaattatataattttcttaaattattagcagtgtc 321  Q
    ||||||||||||| |||||| |||||| |||||||||| ||||||| | ||||||||||| |||||    
T  12696389 ccgacacgacactgacacttgtaattacactgaattatgtaattttttcaaattattagctgtgtc 12696324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 323
Target Start/End: Original strand, 32511674 - 32511727
Alignment:
Q  270 acacttataattatactgaattatataattttcttaaattattagcagtgtcag 323  Q
    ||||||||||||| |||||||||| | ||||||||||||||||||| |||||||    
T  32511674 acacttataattacactgaattatgtgattttcttaaattattagcggtgtcag 32511727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 258 - 321
Target Start/End: Original strand, 9025490 - 9025553
Alignment:
Q  258 gacacgacacttacacttataattatactgaattatataattttcttaaattattagcagtgtc 321  Q
    ||||||||||  |||| |||||||| |||||||||| | ||||||| |||||||||||||||||    
T  9025490 gacacgacaccgacacatataattacactgaattatgtgattttctcaaattattagcagtgtc 9025553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 275 - 321
Target Start/End: Original strand, 7996391 - 7996437
Alignment:
Q  275 tataattatactgaattatataattttcttaaattattagcagtgtc 321  Q
    |||||||| |||||||||||| ||||||| |||||||||||||||||    
T  7996391 tataattacactgaattatatgattttctcaaattattagcagtgtc 7996437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 275 - 321
Target Start/End: Complemental strand, 8022410 - 8022364
Alignment:
Q  275 tataattatactgaattatataattttcttaaattattagcagtgtc 321  Q
    |||||||| |||||||||||| ||||||| |||||||||||||||||    
T  8022410 tataattacactgaattatatgattttctcaaattattagcagtgtc 8022364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 275 - 320
Target Start/End: Original strand, 8389485 - 8389530
Alignment:
Q  275 tataattatactgaattatataattttcttaaattattagcagtgt 320  Q
    |||||||| |||||||||||| |||||||||||||||||| |||||    
T  8389485 tataattacactgaattatatgattttcttaaattattagtagtgt 8389530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 311
Target Start/End: Original strand, 17411876 - 17411917
Alignment:
Q  270 acacttataattatactgaattatataattttcttaaattat 311  Q
    |||| ||||||||||||||||||||| |||||||||||||||    
T  17411876 acacatataattatactgaattatatgattttcttaaattat 17411917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 250 - 321
Target Start/End: Original strand, 8931590 - 8931661
Alignment:
Q  250 ctgataccgacacgacacttacacttataattatactgaattatataattttcttaaattattagcagtgtc 321  Q
    |||| ||||||||||||   |||| ||||||||||||||||||| | ||||||| ||||| ||||| |||||    
T  8931590 ctgacaccgacacgacatcgacacatataattatactgaattatgttattttctcaaatttttagctgtgtc 8931661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 270 - 313
Target Start/End: Complemental strand, 14721292 - 14721249
Alignment:
Q  270 acacttataattatactgaattatataattttcttaaattatta 313  Q
    |||| |||||||||| |||||||| |||||||||||||||||||    
T  14721292 acacatataattatagtgaattatgtaattttcttaaattatta 14721249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 217 - 321
Target Start/End: Complemental strand, 16766797 - 16766697
Alignment:
Q  217 cgtgtctcgatgtcgaacacgtgttgtatccaactgataccgacacgacacttacacttataattatactgaattatataattttcttaaattattagca 316  Q
    |||||| || ||||| ||||||||||| ||| ||    |||||||||||||  |||||| |||||| |||||||||| | ||||| | |||||||||||     
T  16766797 cgtgtcccggtgtcggacacgtgttgtgtccgac----accgacacgacaccgacacttgtaattacactgaattatgtgattttttcaaattattagct 16766702  T
Q  317 gtgtc 321  Q
    |||||    
T  16766701 gtgtc 16766697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 321
Target Start/End: Complemental strand, 9658925 - 9658879
Alignment:
Q  275 tataattatactgaattatataattttcttaaattattagcagtgtc 321  Q
    |||||||| |||||||||| | ||||||||||||||||||| |||||    
T  9658925 tataattacactgaattatgtgattttcttaaattattagcggtgtc 9658879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 315
Target Start/End: Original strand, 20576628 - 20576686
Alignment:
Q  257 cgacacgacacttacacttataattatactgaattatataattttcttaaattattagc 315  Q
    |||||||||||  ||||||||||||| ||||||||||  ||||||||  ||||||||||    
T  20576628 cgacacgacaccaacacttataattacactgaattatgcaattttctcgaattattagc 20576686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 321
Target Start/End: Complemental strand, 26562755 - 26562689
Alignment:
Q  255 accgacacgacacttacacttataattatactgaattatataattttcttaaattattagcagtgtc 321  Q
    ||||||||||||   |||| |||||||| |||||||||| | ||||||| ||||| |||||||||||    
T  26562755 accgacacgacatcgacacatataattacactgaattatgtgattttctcaaatttttagcagtgtc 26562689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 313
Target Start/End: Original strand, 34895028 - 34895085
Alignment:
Q  256 ccgacacgacacttacacttataattatactgaattatataattttcttaaattatta 313  Q
    |||||| |||||| |||| ||| |||| |||||||| ||||||||||| |||||||||    
T  34895028 ccgacatgacactgacacctatgattacactgaattgtataattttctcaaattatta 34895085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 314
Target Start/End: Complemental strand, 9522991 - 9522898
Alignment:
Q  217 cgtgtctcgatgtcgaacacgtgttgtatccaactgataccgacacgacacttacacttataattatactgaattatataattttcttaaattattag 314  Q
    ||||||||| ||||| |||||||| | |||| ||    |||||||| ||||  |||||| |||||| |||||||||| | ||||| ||||||||||||    
T  9522991 cgtgtctcggtgtcggacacgtgtcggatccgac----accgacacaacaccgacacttgtaattacactgaattatgtgatttttttaaattattag 9522898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 326
Target Start/End: Complemental strand, 28715346 - 28715290
Alignment:
Q  270 acacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 326  Q
    |||||| |||||| |||||||||| | ||||| | ||||||||||| ||||||||||    
T  28715346 acacttgtaattacactgaattatgtcattttttcaaattattagccgtgtcagtgt 28715290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 327
Target Start/End: Complemental strand, 33817995 - 33817943
Alignment:
Q  275 tataattatactgaattatataattttcttaaattattagcagtgtcagtgtt 327  Q
    |||||||| ||||||||||  ||||||||  |||||||||| |||||||||||    
T  33817995 tataattacactgaattatgaaattttctccaattattagcggtgtcagtgtt 33817943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 307
Target Start/End: Complemental strand, 34197173 - 34197125
Alignment:
Q  259 acacgacacttacacttataattatactgaattatataattttcttaaa 307  Q
    |||||||||  ||||||||||||| |||||||||||| | |||||||||    
T  34197173 acacgacaccgacacttataattacactgaattatatcactttcttaaa 34197125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 339
Target Start/End: Complemental strand, 40332242 - 40332173
Alignment:
Q  270 acacttataattatactgaattatataattttcttaaattattagcagtgtcagtgttgtgtccggtgtc 339  Q
    |||||| |||||| |||||||||| | ||||||| |||||||| |||||||| |||| ||||||||||||    
T  40332242 acacttgtaattacactgaattatgtgattttctcaaattatttgcagtgtccgtgtcgtgtccggtgtc 40332173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 270 - 326
Target Start/End: Complemental strand, 11803310 - 11803254
Alignment:
Q  270 acacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 326  Q
    |||| |||||||| |||||||||| | ||||||||||||||||| ||||||||||||    
T  11803310 acacatataattacactgaattatgtgattttcttaaattattaacagtgtcagtgt 11803254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 257 - 321
Target Start/End: Original strand, 14634136 - 14634200
Alignment:
Q  257 cgacacgacacttacacttataattatactgaattatataattttcttaaattattagcagtgtc 321  Q
    |||||||||||  |||  |||||||| |||||||||||||||||||||||||| ||||| |||||    
T  14634136 cgacacgacaccaacaaatataattacactgaattatataattttcttaaattgttagcggtgtc 14634200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 258 - 339
Target Start/End: Complemental strand, 21465475 - 21465394
Alignment:
Q  258 gacacgacacttacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgttgtgtccggtgtc 339  Q
    ||||||||||  |||||| |||||| |  ||||||||| ||||| | ||||||||||| ||||| |||| ||||||||||||    
T  21465475 gacacgacaccaacacttgtaattacatcgaattatatgattttttcaaattattagctgtgtccgtgtcgtgtccggtgtc 21465394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 270 - 321
Target Start/End: Original strand, 12606837 - 12606888
Alignment:
Q  270 acacttataattatactgaattatataattttcttaaattattagcagtgtc 321  Q
    |||| |||||||| | |||||||||| ||||||| |||||||||||||||||    
T  12606837 acacatataattacattgaattatatgattttctcaaattattagcagtgtc 12606888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 259 - 326
Target Start/End: Complemental strand, 25566903 - 25566836
Alignment:
Q  259 acacgacacttacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 326  Q
    |||||||||  |||||| |||||| |||||||||| | ||||| | ||||||||||| ||||||||||    
T  25566903 acacgacaccgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtcagtgt 25566836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 316
Target Start/End: Complemental strand, 3025610 - 3025556
Alignment:
Q  262 cgacacttacacttataattatactgaattatataattttcttaaattattagca 316  Q
    ||||||| |||| |||||||| |||||||||| | ||||||| ||||||||||||    
T  3025610 cgacactgacacctataattacactgaattatgtgattttctcaaattattagca 3025556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 321
Target Start/End: Complemental strand, 22652042 - 22651976
Alignment:
Q  255 accgacacgacacttacacttataattatactgaattatataattttcttaaattattagcagtgtc 321  Q
    |||||||||||||  |||||| |||||||| |||||||| | ||||| | ||||||||||| |||||    
T  22652042 accgacacgacaccgacacttgtaattatattgaattatgtgattttttcaaattattagctgtgtc 22651976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 321
Target Start/End: Original strand, 24362195 - 24362261
Alignment:
Q  255 accgacacgacacttacacttataattatactgaattatataattttcttaaattattagcagtgtc 321  Q
    |||||||||||| | |||| |||||||| |||||||||| | ||| ||| ||||||||||| |||||    
T  24362195 accgacacgacattgacacatataattacactgaattatgtgattctctcaaattattagcggtgtc 24362261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 321
Target Start/End: Complemental strand, 29776082 - 29776036
Alignment:
Q  275 tataattatactgaattatataattttcttaaattattagcagtgtc 321  Q
    ||||||||||||||||||  | ||||||| |||||||||||||||||    
T  29776082 tataattatactgaattacgtgattttctcaaattattagcagtgtc 29776036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 339
Target Start/End: Complemental strand, 14731763 - 14731694
Alignment:
Q  270 acacttataattatactgaattatataattttcttaaattattagcagtgtcagtgttgtgtccggtgtc 339  Q
    |||| |||||||| ||| |||||| | ||||||| ||||||||||||||||| ||||  ||||| |||||    
T  14731763 acacatataattacactaaattatgtgattttctcaaattattagcagtgtctgtgtcatgtccagtgtc 14731694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 322
Target Start/End: Original strand, 12570516 - 12570568
Alignment:
Q  270 acacttataattatactgaattatataattttcttaaattattagcagtgtca 322  Q
    |||| |||||||| ||| |||||| |  |||||||||||||||||||||||||    
T  12570516 acacatataattacacttaattatgtgtttttcttaaattattagcagtgtca 12570568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 315
Target Start/End: Original strand, 8010295 - 8010340
Alignment:
Q  270 acacttataattatactgaattatataattttcttaaattattagc 315  Q
    |||||||||||||||||||||||||||||||| | |||||||||||    
T  8010295 acacttataattatactgaattatataattttttcaaattattagc 8010340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 257 - 321
Target Start/End: Original strand, 5376495 - 5376559
Alignment:
Q  257 cgacacgacacttacacttataattatactgaattatataattttcttaaattattagcagtgtc 321  Q
    |||||||||||  |||||| |||||| |||||||||| | ||||||||||||||||||| |||||    
T  5376495 cgacacgacaccgacacttttaattacactgaattatgttattttcttaaattattagcggtgtc 5376559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 255 - 315
Target Start/End: Complemental strand, 21038149 - 21038089
Alignment:
Q  255 accgacacgacacttacacttataattatactgaattatataattttcttaaattattagc 315  Q
    |||||||||||||| || | ||| |||| |||||||||| |||||||||||||||||||||    
T  21038149 accgacacgacactgacgcatatgattacactgaattatgtaattttcttaaattattagc 21038089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 323
Target Start/End: Original strand, 1486703 - 1486770
Alignment:
Q  256 ccgacacgacacttacacttataattatactgaattatataattttcttaaattattagcagtgtcag 323  Q
    ||||||||||||  ||||||||||||| |||||||||| | ||||| | ||||||||||| |||||||    
T  1486703 ccgacacgacaccgacacttataattacactgaattatgtgattttttcaaattattagctgtgtcag 1486770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 319
Target Start/End: Original strand, 34712377 - 34712440
Alignment:
Q  256 ccgacacgacacttacacttataattatactgaattatataattttcttaaattattagcagtg 319  Q
    ||||||||||||| |||| |||||||| ||| |||||| | ||||||| |||||||||||||||    
T  34712377 ccgacacgacactgacacatataattacactaaattatgttattttctcaaattattagcagtg 34712440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 321
Target Start/End: Complemental strand, 113363 - 113299
Alignment:
Q  257 cgacacgacacttacacttataattatactgaattatataattttcttaaattattagcagtgtc 321  Q
    ||||||||||| ||||||| |||||| |||||||||| | ||||| | ||||||||||| |||||    
T  113363 cgacacgacacctacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtc 113299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 314
Target Start/End: Original strand, 7918207 - 7918263
Alignment:
Q  258 gacacgacacttacacttataattatactgaattatataattttcttaaattattag 314  Q
    ||||||||||| |||| |||||||| |||||||||| | ||||||| ||||||||||    
T  7918207 gacacgacactgacacatataattacactgaattatgtgattttctcaaattattag 7918263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 321
Target Start/End: Original strand, 9629895 - 9629959
Alignment:
Q  257 cgacacgacacttacacttataattatactgaattatataattttcttaaattattagcagtgtc 321  Q
    |||||||||||  ||||||||||| | |||||||||||| ||||| | ||||||||||| |||||    
T  9629895 cgacacgacaccgacacttataatcacactgaattatatgattttatcaaattattagcggtgtc 9629959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 311
Target Start/End: Complemental strand, 25361952 - 25361896
Alignment:
Q  255 accgacacgacacttacacttataattatactgaattatataattttcttaaattat 311  Q
    |||||||||||||| |||| |||||||| |||||||||| | ||||||| |||||||    
T  25361952 accgacacgacactgacacatataattacactgaattatgtgattttctcaaattat 25361896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 314
Target Start/End: Original strand, 35999330 - 35999374
Alignment:
Q  270 acacttataattatactgaattatataattttcttaaattattag 314  Q
    |||| |||||||||||| |||||||| ||||||||||||||||||    
T  35999330 acacatataattatactaaattatatgattttcttaaattattag 35999374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 270 - 321
Target Start/End: Complemental strand, 13436509 - 13436458
Alignment:
Q  270 acacttataattatactgaattatataattttcttaaattattagcagtgtc 321  Q
    |||| |||||||| |||||||||| | |||| ||||||||||||||||||||    
T  13436509 acacatataattacactgaattatgtgatttccttaaattattagcagtgtc 13436458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 255 - 326
Target Start/End: Complemental strand, 17754377 - 17754306
Alignment:
Q  255 accgacacgacacttacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 326  Q
    |||||||| ||||| |||| |||| ||| |||||||||| ||||||| | ||||||||||| ||||| ||||    
T  17754377 accgacaccacactgacacatatagttacactgaattatgtaattttttcaaattattagcggtgtcggtgt 17754306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 270 - 313
Target Start/End: Original strand, 22907347 - 22907390
Alignment:
Q  270 acacttataattatactgaattatataattttcttaaattatta 313  Q
    ||||||||||||||||  |||||||||||||||| |||||||||    
T  22907347 acacttataattataccaaattatataattttctcaaattatta 22907390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 255 - 326
Target Start/End: Complemental strand, 38503386 - 38503315
Alignment:
Q  255 accgacacgacacttacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 326  Q
    ||||||| |||||  |||| |||||||| |||||| ||||| ||||||| ||||||||||| ||||| ||||    
T  38503386 accgacaggacaccgacacatataattacactgaaatatatgattttctcaaattattagcggtgtcggtgt 38503315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 275 - 326
Target Start/End: Complemental strand, 40181917 - 40181866
Alignment:
Q  275 tataattatactgaattatataattttcttaaattattagcagtgtcagtgt 326  Q
    |||||||| |||||||||| | ||||||| ||||||||||||||||| ||||    
T  40181917 tataattacactgaattatgtgattttctcaaattattagcagtgtctgtgt 40181866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 313
Target Start/End: Complemental strand, 28674846 - 28674808
Alignment:
Q  275 tataattatactgaattatataattttcttaaattatta 313  Q
    ||||||||||||||||||| ||||||||| |||||||||    
T  28674846 tataattatactgaattatgtaattttctcaaattatta 28674808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 339
Target Start/End: Complemental strand, 29229485 - 29229443
Alignment:
Q  297 attttcttaaattattagcagtgtcagtgttgtgtccggtgtc 339  Q
    ||||||| |||||||||||||||||||||| |||||| |||||    
T  29229485 attttctcaaattattagcagtgtcagtgtcgtgtccagtgtc 29229443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 313
Target Start/End: Complemental strand, 47989563 - 47989505
Alignment:
Q  255 accgacacgacacttacacttataattatactgaattatataattttcttaaattatta 313  Q
    |||||||||||||  |||||| |||||| |||||||||| | ||||| |||||||||||    
T  47989563 accgacacgacaccgacacttgtaattacactgaattatgtgatttttttaaattatta 47989505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 323
Target Start/End: Original strand, 39130775 - 39130828
Alignment:
Q  270 acacttataattatactgaattatataattttcttaaattattagcagtgtcag 323  Q
    |||| |||||||| ||| |||||||||||||||| |||||||||  ||||||||    
T  39130775 acacatataattacactaaattatataattttctaaaattattaatagtgtcag 39130828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 326
Target Start/End: Complemental strand, 52284754 - 52284697
Alignment:
Q  270 acacttataattatactgaattata-taattttcttaaattattagcagtgtcagtgt 326  Q
    |||||| |||||||||||||||||| |  |||| ||||||||||||| ||||||||||    
T  52284754 acacttgtaattatactgaattatatttttttttttaaattattagctgtgtcagtgt 52284697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 313
Target Start/End: Original strand, 6612166 - 6612222
Alignment:
Q  257 cgacacgacacttacacttataattatactgaattatataattttcttaaattatta 313  Q
    |||||||||||  |||||| |||||| |||||||||| ||||||| | |||||||||    
T  6612166 cgacacgacaccgacacttgtaattacactgaattatgtaattttttcaaattatta 6612222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 311
Target Start/End: Complemental strand, 44482296 - 44482240
Alignment:
Q  255 accgacacgacacttacacttataattatactgaattatataattttcttaaattat 311  Q
    |||||||||||||  |||| |||||||| |||||||||| | ||||||| |||||||    
T  44482296 accgacacgacaccgacacatataattacactgaattatgtgattttctcaaattat 44482240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 255 - 311
Target Start/End: Complemental strand, 56988 - 56932
Alignment:
Q  255 accgacacgacacttacacttataattatactgaattatataattttcttaaattat 311  Q
    |||||||||||||| |||||||| |||| |||||||||||| ||||||| |||||||    
T  56988 accgacacgacactgacacttatgattacactgaattatatcattttctcaaattat 56932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 250 - 322
Target Start/End: Complemental strand, 25817566 - 25817494
Alignment:
Q  250 ctgataccgacacgacacttacacttataattatactgaattatataattttcttaaattattagcagtgtca 322  Q
    |||| ||||||| || ||| |||| |||||| ||||||||| |||| ||||| ||||||||||||||||||||    
T  25817566 ctgacaccgacatgatactgacacatataatcatactgaatcatatgatttttttaaattattagcagtgtca 25817494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 255 - 323
Target Start/End: Complemental strand, 39698607 - 39698539
Alignment:
Q  255 accgacacgacacttacacttataattatactgaattatataattttcttaaattattagcagtgtcag 323  Q
    |||||||||||||| |||||| |||||| |||||||||| | ||||| | ||||||||||| |||||||    
T  39698607 accgacacgacactgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtcag 39698539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 259 - 326
Target Start/End: Original strand, 6471886 - 6471953
Alignment:
Q  259 acacgacacttacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 326  Q
    |||||||||  |||| |||||||| |||||||||| | ||||||| ||||||||||| ||||||||||    
T  6471886 acacgacacccacacatataattacactgaattatgtgattttctcaaattattagccgtgtcagtgt 6471953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 262 - 323
Target Start/End: Original strand, 32630735 - 32630796
Alignment:
Q  262 cgacacttacacttataattatactgaattatataattttcttaaattattagcagtgtcag 323  Q
    ||||||| |||| |||||||| | |||||||||||||||||| ||||||||| | |||||||    
T  32630735 cgacactgacacatataattacattgaattatataattttctcaaattattatcggtgtcag 32630796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 321
Target Start/End: Original strand, 15410443 - 15410507
Alignment:
Q  257 cgacacgacacttacacttataattatactgaattatataattttcttaaattattagcagtgtc 321  Q
    |||||| ||||  |||| ||| |||| ||||||| |||||||||||||||||||||||| |||||    
T  15410443 cgacacaacaccaacacatatgattacactgaatcatataattttcttaaattattagcggtgtc 15410507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 323
Target Start/End: Original strand, 22423805 - 22423873
Alignment:
Q  255 accgacacgacacttacacttataattatactgaattatataattttcttaaattattagcagtgtcag 323  Q
    |||||||||||||  |||  |||||||||| |||||||| | ||||||| |||||||||| ||||||||    
T  22423805 accgacacgacaccgacatatataattatattgaattatgtgattttctcaaattattagtagtgtcag 22423873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 217 - 321
Target Start/End: Complemental strand, 18592173 - 18592073
Alignment:
Q  217 cgtgtctcgatgtcgaacacgtgttgtatccaactgataccgacacgacacttacacttataattatactgaattatataattttcttaaattattagca 316  Q
    |||||| |||||||  ||||||||||| ||| ||    |||||||||||||   ||| |||||||| | |||||||| ||||||||||||| |||||||     
T  18592173 cgtgtcccgatgtcagacacgtgttgtgtccgac----accgacacgacaccggcacatataattacattgaattatgtaattttcttaaaatattagcg 18592078  T
Q  317 gtgtc 321  Q
    |||||    
T  18592077 gtgtc 18592073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 270 - 313
Target Start/End: Complemental strand, 25863255 - 25863212
Alignment:
Q  270 acacttataattatactgaattatataattttcttaaattatta 313  Q
    ||||||||||||| |||||||||||| ||||||| |||||||||    
T  25863255 acacttataattacactgaattatatcattttctcaaattatta 25863212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 258 - 321
Target Start/End: Complemental strand, 39205943 - 39205880
Alignment:
Q  258 gacacgacacttacacttataattatactgaattatataattttcttaaattattagcagtgtc 321  Q
    ||||||||||  |||| |||||||| ||  |||||||| ||||||| |||||||||||||||||    
T  39205943 gacacgacaccaacacatataattacacctaattatatgattttctcaaattattagcagtgtc 39205880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 270 - 321
Target Start/End: Complemental strand, 43001851 - 43001800
Alignment:
Q  270 acacttataattatactgaattatataattttcttaaattattagcagtgtc 321  Q
    |||||| |||||| |||||||||| ||||||| | |||||||||||||||||    
T  43001851 acacttgtaattacactgaattatgtaattttttcaaattattagcagtgtc 43001800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 326
Target Start/End: Original strand, 2236811 - 2236848
Alignment:
Q  288 aattatataattttcttaaattattagcagtgtcagtgt 326  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  2236811 aattatataattttcttaaattattagc-gtgtcagtgt 2236848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 313
Target Start/End: Complemental strand, 12641781 - 12641682
Alignment:
Q  210 aattaaacgtgtctcgatgtcgaacacgtgttgtatccaactgataccgacacgacacttacacttataattatactgaattatataattttcttaaatt 309  Q
    ||||| |||||||||  ||||||||||||||||| ||    ||| ||| |||||||||| |||| |  ||||||||| |||||| | ||||| |||||||    
T  12641781 aattagacgtgtctccgtgtcgaacacgtgttgtgtc----tgacaccaacacgacactgacacgtgcaattatactaaattatgtgatttttttaaatt 12641686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 320
Target Start/End: Original strand, 25888285 - 25888353
Alignment:
Q  254 taccgacacgacacttacacttataattatactgaattatataattttctt--aaattattagcagtgt 320  Q
    ||||||||||||||  | ||||||||||| |||||||||||| ||||| ||  |||||||||| |||||    
T  25888285 taccgacacgacacggagacttataattacactgaattatatgattttttttaaaattattagtagtgt 25888353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 320
Target Start/End: Complemental strand, 36838605 - 36838544
Alignment:
Q  259 acacgacacttacacttataattatactgaattatataattttcttaaattattagcagtgt 320  Q
    |||||||||  |||| |||||||| ||| |||||| ||||||||| ||||||||||| ||||    
T  36838605 acacgacaccgacacatataattacactaaattatgtaattttctcaaattattagcggtgt 36838544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 321
Target Start/End: Complemental strand, 27932279 - 27932235
Alignment:
Q  277 taattatactgaattatataattttcttaaattattagcagtgtc 321  Q
    |||||| |||||||||| ||||||||| ||||||||||| |||||    
T  27932279 taattacactgaattatgtaattttctcaaattattagcggtgtc 27932235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 326
Target Start/End: Original strand, 41091265 - 41091321
Alignment:
Q  270 acacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 326  Q
    |||| |||||||| |||||||||| | ||||||| |||| |||||||||||| ||||    
T  41091265 acacatataattacactgaattatgtgattttctcaaatcattagcagtgtccgtgt 41091321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 258 - 321
Target Start/End: Complemental strand, 8729 - 8666
Alignment:
Q  258 gacacgacacttacacttataattatactgaattatataattttcttaaattattagcagtgtc 321  Q
    ||||||||||  |||||||||||||||||||| ||| | |||||| ||||||||||| ||||||    
T  8729 gacacgacaccgacacttataattatactgaactatgtgattttcctaaattattagaagtgtc 8666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 326
Target Start/End: Complemental strand, 51701324 - 51701253
Alignment:
Q  255 accgacacgacacttacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 326  Q
    |||||||||||||| |||||| |||||| ||| |||||| ||||||| | ||||||||||| ||||| ||||    
T  51701324 accgacacgacactaacacttgtaattacactcaattatgtaattttttcaaattattagctgtgtccgtgt 51701253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 276 - 321
Target Start/End: Complemental strand, 56257978 - 56257933
Alignment:
Q  276 ataattatactgaattatataattttcttaaattattagcagtgtc 321  Q
    ||||||| |||||||||||| ||||||| |||||||||||||||||    
T  56257978 ataattacactgaattatatgattttctcaaattattagcagtgtc 56257933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 322
Target Start/End: Original strand, 1213229 - 1213280
Alignment:
Q  270 acacttataattatactgaattatataattttcttaaattattagcagtgtca 322  Q
    |||| |||||||| |||||||||||||||||| ||||||||||| ||||||||    
T  1213229 acacatataattacactgaattatataatttt-ttaaattattaacagtgtca 1213280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 318
Target Start/End: Complemental strand, 30838273 - 30838213
Alignment:
Q  258 gacacgacacttacacttataattatactgaattatataattttcttaaattattagcagt 318  Q
    ||||||||||  | ||||||||||| ||| |||||||||||||| | ||||||||||||||    
T  30838273 gacacgacaccgatacttataattacactaaattatataattttatcaaattattagcagt 30838213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 270 - 321
Target Start/End: Original strand, 26504307 - 26504358
Alignment:
Q  270 acacttataattatactgaattatataattttcttaaattattagcagtgtc 321  Q
    |||| |||||||| |||||| ||| | |||||||||||||||||||||||||    
T  26504307 acacatataattacactgaactatttgattttcttaaattattagcagtgtc 26504358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 275 - 314
Target Start/End: Complemental strand, 37698758 - 37698719
Alignment:
Q  275 tataattatactgaattatataattttcttaaattattag 314  Q
    |||||||| |||||||||||||||||||| ||||||||||    
T  37698758 tataattacactgaattatataattttctcaaattattag 37698719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 275 - 314
Target Start/End: Original strand, 49652985 - 49653024
Alignment:
Q  275 tataattatactgaattatataattttcttaaattattag 314  Q
    ||||||||||||||||||| | ||||||||||||||||||    
T  49652985 tataattatactgaattatctgattttcttaaattattag 49653024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 326
Target Start/End: Complemental strand, 35161085 - 35161031
Alignment:
Q  272 acttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 326  Q
    ||||||||||| |||||||||| | |||||||| ||||| |||||||||| ||||    
T  35161085 acttataattacactgaattatgtgattttcttgaattagtagcagtgtcggtgt 35161031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 319
Target Start/End: Original strand, 35952612 - 35952674
Alignment:
Q  257 cgacacgacacttacacttataattatactgaattatataattttcttaaattattagcagtg 319  Q
    |||||||||||| | || |||||||| | |||||||||| ||||| | |||||||||||||||    
T  35952612 cgacacgacactgatacatataattacattgaattatatgattttatcaaattattagcagtg 35952674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 339
Target Start/End: Complemental strand, 37203316 - 37203246
Alignment:
Q  269 tacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgttgtgtccggtgtc 339  Q
    ||||||| |||||| ||| |||||| | ||||| | ||||||||||| ||||| |||| ||||||||||||    
T  37203316 tacacttgtaattacactaaattatgtcattttttcaaattattagccgtgtctgtgtcgtgtccggtgtc 37203246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 315
Target Start/End: Complemental strand, 848002 - 847957
Alignment:
Q  270 acacttataattatactgaattatataattttcttaaattattagc 315  Q
    |||||| |||||||| |||||||| ||||||||| |||||||||||    
T  848002 acacttgtaattatagtgaattatgtaattttctcaaattattagc 847957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 321
Target Start/End: Original strand, 3947760 - 3947825
Alignment:
Q  256 ccgacacgacacttacacttataattatactgaattatataattttcttaaattattagcagtgtc 321  Q
    ||||||||||||| |||||| |||||| ||||||||||   ||||| | ||||||||||| |||||    
T  3947760 ccgacacgacactgacacttgtaattacactgaattatgcgattttttcaaattattagctgtgtc 3947825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 339
Target Start/End: Original strand, 7727967 - 7728036
Alignment:
Q  270 acacttataattatactgaattatataattttcttaaattattagcagtgtcagtgttgtgtccggtgtc 339  Q
    |||| |||||||||||||||| || | ||||||| || |||||| | ||||| |||| ||||||||||||    
T  7727967 acacctataattatactgaatcatgtcattttctcaacttattatcggtgtctgtgtcgtgtccggtgtc 7728036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 315
Target Start/End: Original strand, 11596348 - 11596405
Alignment:
Q  258 gacacgacacttacacttataattatactgaattatataattttcttaaattattagc 315  Q
    |||||||||| ||||||| |||||| |||||||||| | ||||| | |||||||||||    
T  11596348 gacacgacacctacacttgtaattacactgaattatgtgattttttcaaattattagc 11596405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 313
Target Start/End: Complemental strand, 20179401 - 20179364
Alignment:
Q  276 ataattatactgaattatataattttcttaaattatta 313  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  20179401 ataattatactgaattatatgattttcttaaactatta 20179364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 315
Target Start/End: Original strand, 30982866 - 30982931
Alignment:
Q  250 ctgataccgacacgacacttacacttataattatactgaattatataattttcttaaattattagc 315  Q
    |||| |||||||||||||  ||||||||||||| |||||| ||| | ||||||| |||| ||||||    
T  30982866 ctgacaccgacacgacaccgacacttataattacactgaaatatgtgattttctcaaatcattagc 30982931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 321
Target Start/End: Complemental strand, 13134514 - 13134450
Alignment:
Q  257 cgacacgacacttacacttataattatactgaattatataattttcttaaattattagcagtgtc 321  Q
    ||||||||||   |||| |||||||| ||| |||||| | ||||||||||||||| |||||||||    
T  13134514 cgacacgacatcgacacatataattacactaaattatgtgattttcttaaattataagcagtgtc 13134450  T

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Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 320
Target Start/End: Original strand, 15659754 - 15659818
Alignment:
Q  256 ccgacacgacacttacacttataattatactgaattatataattttcttaaattattagcagtgt 320  Q
    ||||||||||||  |||| |||||||| || |||||||   ||||||| ||||||||||||||||    
T  15659754 ccgacacgacaccaacacatataattacaccgaattatgagattttctcaaattattagcagtgt 15659818  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 313
Target Start/End: Original strand, 55941010 - 55941054
Alignment:
Q  269 tacacttataattatactgaattatataattttcttaaattatta 313  Q
    ||||| ||| |||||||| |||||| |||||||||||||||||||    
T  55941010 tacacatatgattatactaaattatgtaattttcttaaattatta 55941054  T

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Target: scaffold0223 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 321
Target Start/End: Complemental strand, 20238 - 20172
Alignment:
Q  255 accgacacgacacttacacttataattatactgaattatataattttcttaaattattagcagtgtc 321  Q
    |||||||||||||| |||||| |||||| |||||||||| | ||||| | ||||||||||| |||||    
T  20238 accgacacgacactgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtc 20172  T

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Target: scaffold0123 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 323
Target Start/End: Original strand, 44459 - 44586
Alignment:
Q  192 aagcacagatacttctccaattaaacgtgtctcgatgtcgaacacgtgttgtatccaactgataccgacacgacacttacacttataattatactgaatt 291  Q
    ||||||||| |||||||  ||||| | |||| |  ||||| ||||||||||| ||||||    |||||||||| ||  |||| |||||||| ||||||||    
T  44459 aagcacagacacttctcagattaaccatgtcccagtgtcggacacgtgttgtgtccaac----accgacacgataccgacacatataattacactgaatt 44554  T
Q  292 atataattttcttaaattattagcagtgtcag 323  Q
    || | ||||||| ||||| ||||| |||||||    
T  44555 atgtgattttctcaaatttttagcggtgtcag 44586  T

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Target: scaffold0024 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 313
Target Start/End: Original strand, 68235 - 68293
Alignment:
Q  255 accgacacgacacttacacttataattatactgaattatataattttcttaaattatta 313  Q
    ||||| |||||||| |||| |||||||||||| |||||||| ||||||| |||||||||    
T  68235 accgatacgacactgacacctataattatactaaattatatgattttctcaaattatta 68293  T

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Target: scaffold0020 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 326
Target Start/End: Original strand, 135308 - 135376
Alignment:
Q  258 gacacgacacttacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 326  Q
    ||||||||||  |||| |||||||| || ||||||| | ||||||| ||||||||||||||||| ||||    
T  135308 gacacgacaccgacacatataattacacagaattatgtgattttctcaaattattagcagtgtcggtgt 135376  T

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Target: scaffold1528 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold1528
Description:

Target: scaffold1528; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 255 - 326
Target Start/End: Complemental strand, 1101 - 1030
Alignment:
Q  255 accgacacgacacttacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 326  Q
    |||||||| ||||| |||| |||| ||| |||||||||| ||||||| | ||||||||||| ||||| ||||    
T  1101 accgacaccacactgacacatatagttacactgaattatgtaattttttcaaattattagcggtgtcggtgt 1030  T

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Target: scaffold0722 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0722
Description:

Target: scaffold0722; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 262 - 321
Target Start/End: Original strand, 7032 - 7091
Alignment:
Q  262 cgacacttacacttataattatactgaattatataattttcttaaattattagcagtgtc 321  Q
    |||||| ||||||| |||||||||| |||||| ||||||| | ||||||||||| |||||    
T  7032 cgacacctacacttgtaattatactaaattatgtaattttttcaaattattagctgtgtc 7091  T

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Target: scaffold0136 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 217 - 313
Target Start/End: Original strand, 3808 - 3900
Alignment:
Q  217 cgtgtctcgatgtcgaacacgtgttgtatccaactgataccgacacgacacttacacttataattatactgaattatataattttcttaaattatta 313  Q
    ||||||||||||||| ||| |||| || ||| ||    ||| |||||||||| |||||| |||||| |||||||||| | ||||| |||||||||||    
T  3808 cgtgtctcgatgtcggacatgtgtcgtgtccgac----accaacacgacactgacacttgtaattacactgaattatgtgatttttttaaattatta 3900  T

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Target: scaffold0004 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 270 - 321
Target Start/End: Complemental strand, 92858 - 92807
Alignment:
Q  270 acacttataattatactgaattatataattttcttaaattattagcagtgtc 321  Q
    |||||| |||||| |||||||||| ||||||||| ||||||||||| |||||    
T  92858 acacttgtaattacactgaattatgtaattttctcaaattattagcggtgtc 92807  T

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Target: scaffold0044 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 312
Target Start/End: Complemental strand, 53246 - 53189
Alignment:
Q  255 accgacacgacacttacacttataattatactgaattatataattttcttaaattatt 312  Q
    ||||||||| |||  ||||||||||||| |||||||||| | ||||||| ||||||||    
T  53246 accgacacggcaccgacacttataattacactgaattatgtgattttctcaaattatt 53189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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