View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5226_low_11 (Length: 293)

Name: NF5226_low_11
Description: NF5226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5226_low_11
NF5226_low_11
[»] scaffold0092 (1 HSPs)
scaffold0092 (176-281)||(23283-23389)
[»] chr3 (2 HSPs)
chr3 (193-276)||(18269779-18269863)
chr3 (23-64)||(1653873-1653914)
[»] chr8 (5 HSPs)
chr8 (180-281)||(15050029-15050132)
chr8 (207-275)||(23635948-23636017)
chr8 (21-70)||(15049870-15049919)
chr8 (193-281)||(10408785-10408874)
chr8 (193-270)||(5994601-5994679)
[»] chr1 (13 HSPs)
chr1 (176-281)||(26841960-26842054)
chr1 (18-72)||(26841802-26841856)
chr1 (177-281)||(15495986-15496091)
chr1 (191-280)||(14351019-14351108)
chr1 (193-280)||(26236725-26236813)
chr1 (207-265)||(2077366-2077425)
chr1 (198-275)||(10494882-10494960)
chr1 (193-227)||(11408058-11408092)
chr1 (192-281)||(11814774-11814863)
chr1 (191-280)||(32058637-32058727)
chr1 (193-227)||(39709071-39709105)
chr1 (221-277)||(29099646-29099703)
chr1 (193-281)||(34654938-34655027)
[»] chr4 (8 HSPs)
chr4 (209-284)||(55728806-55728882)
chr4 (191-280)||(38093334-38093424)
chr4 (194-276)||(12469356-12469439)
chr4 (194-272)||(12485480-12485559)
chr4 (227-281)||(45873219-45873273)
chr4 (193-281)||(23054306-23054395)
chr4 (193-281)||(47518524-47518613)
chr4 (196-228)||(6410005-6410037)
[»] chr7 (2 HSPs)
chr7 (176-284)||(21590470-21590579)
chr7 (193-281)||(3302535-3302624)
[»] chr6 (3 HSPs)
chr6 (191-275)||(30845524-30845608)
chr6 (193-281)||(21881427-21881516)
chr6 (193-284)||(20740535-20740627)
[»] chr5 (9 HSPs)
chr5 (193-276)||(7767078-7767162)
chr5 (190-281)||(40680983-40681075)
chr5 (176-265)||(26331046-26331136)
chr5 (207-276)||(40599874-40599944)
chr5 (193-281)||(7271794-7271883)
chr5 (193-281)||(27170162-27170251)
chr5 (198-264)||(12156477-12156544)
chr5 (193-281)||(18696893-18696982)
chr5 (206-281)||(24867064-24867140)
[»] chr2 (8 HSPs)
chr2 (193-281)||(1895370-1895459)
chr2 (193-281)||(34660246-34660335)
chr2 (227-281)||(6705618-6705672)
chr2 (207-276)||(9910734-9910804)
chr2 (221-281)||(40900302-40900363)
chr2 (191-273)||(14950329-14950412)
chr2 (230-281)||(38531292-38531343)
chr2 (193-281)||(3921552-3921641)
[»] scaffold0157 (1 HSPs)
scaffold0157 (194-272)||(34918-34997)
[»] scaffold0044 (1 HSPs)
scaffold0044 (197-281)||(42781-42866)


Alignment Details
Target: scaffold0092 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 176 - 281
Target Start/End: Complemental strand, 23389 - 23283
Alignment:
Q  176 gagctcgtaggttattttttggttgtgttgatttgtggtgcttcatggtggtttc-atggtggtgtagatactggatattttgtggtggtgctcgtggtg 274  Q
    |||||||||||||  ||||||||| ||||  ||||||||||||  |||||||||| |||||||||  |||||| | | ||||||||||||||||||||||    
T  23389 gagctcgtaggttggtttttggttatgttcgtttgtggtgctttgtggtggtttccatggtggtgctgatactaggtcttttgtggtggtgctcgtggtg 23290  T
Q  275 gtttttg 281  Q
    |||||||    
T  23289 gtttttg 23283  T

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Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 193 - 276
Target Start/End: Original strand, 18269779 - 18269863
Alignment:
Q  193 tttggttgtgttgatttgtggtgcttcatggtgg-tttcatggtggtgtagatactggatattttgtggtggtgctcgtggtggt 276  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||| |||  ||| | ||||||||||| ||||||||||||    
T  18269779 tttggttgtgttggtttgtggtgcttcatggtggttttcatggtggtgttgattttgggtcttttgtggtggggctcgtggtggt 18269863  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 1653914 - 1653873
Alignment:
Q  23 gtgagaggttgttatgagggtggtggttaatggttcactagc 64  Q
    ||||||||| |||||| ||||||| |||||||||||||||||    
T  1653914 gtgagaggtcgttatgggggtggtcgttaatggttcactagc 1653873  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 281
Target Start/End: Original strand, 15050029 - 15050132
Alignment:
Q  180 tcgtaggttatttttt-ggttgtgttgatttgtggtgcttcatggtggtttca-tggtggtgtagatactggatattttgtggtggtgctcgtggtggtt 277  Q
    |||||||||||||||| || | ||||| ||||||||||||| ||||||||||| ||||||||  | |||| | | |||||||||||||||||||||||||    
T  15050029 tcgtaggttatttttttggctatgttggtttgtggtgcttcgtggtggtttcaatggtggtgctggtactaggtcttttgtggtggtgctcgtggtggtt 15050128  T
Q  278 tttg 281  Q
    ||||    
T  15050129 tttg 15050132  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 207 - 275
Target Start/End: Complemental strand, 23636017 - 23635948
Alignment:
Q  207 tttgtggtgcttcatggtggtttc-atggtggtgtagatactggatattttgtggtggtgctcgtggtgg 275  Q
    |||||||||||||||||||||||| |||||||||| |||||| | | |||||||||||||||||||||||    
T  23636017 tttgtggtgcttcatggtggtttccatggtggtgttgatactaggttttttgtggtggtgctcgtggtgg 23635948  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 15049870 - 15049919
Alignment:
Q  21 cggtgagaggttgttatgagggtggtggttaatggttcactagccggcca 70  Q
    ||||||||||| |||||| |||||||||||||||||||||||| ||||||    
T  15049870 cggtgagaggtcgttatgggggtggtggttaatggttcactagtcggcca 15049919  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 281
Target Start/End: Complemental strand, 10408874 - 10408785
Alignment:
Q  193 tttggttgtgttgatttgtggtgcttcatggtgg-tttcatggtggtgtagatactggatattttgtggtggtgctcgtggtggtttttg 281  Q
    ||||||||||||| ||||||||||||||||| || ||| |||||||||   ||  ||||| |||||||| || |||| ||||||||||||    
T  10408874 tttggttgtgttggtttgtggtgcttcatggaggttttaatggtggtgctaattttggatcttttgtggcggggctcctggtggtttttg 10408785  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 270
Target Start/End: Complemental strand, 5994679 - 5994601
Alignment:
Q  193 tttggttgtgttgatttgtggtgcttcatggtggt-ttcatggtggtgtagatactggatattttgtggtggtgctcgt 270  Q
    ||||||||||||| ||||||||||||||||| ||| ||||||||| ||| |||  ||| | |||||||| || ||||||    
T  5994679 tttggttgtgttggtttgtggtgcttcatggcggtattcatggtgatgttgattttgggtcttttgtggcggggctcgt 5994601  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 176 - 281
Target Start/End: Original strand, 26841960 - 26842054
Alignment:
Q  176 gagctcgtaggttattttttggttgtgttgatttgtggtgcttcatggtggtttcatggtggtgtagatactggatattttgtggtggtgctcgtggtgg 275  Q
    ||||||||||||| |||||||||||||||||||||||||           ||||||||||||||| |||||||| | ||||||||||||||||||||||     
T  26841960 gagctcgtaggttgttttttggttgtgttgatttgtggt-----------gtttcatggtggtgttgatactgggtcttttgtggtggtgctcgtggtga 26842048  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 26841802 - 26841856
Alignment:
Q  18 caccggtgagaggttgttatgagggtggtggttaatggttcactagccggccaaa 72  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26841802 caccagtgagaggtcgttatgagggtggtggttaatggttcactagccggccaaa 26841856  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 177 - 281
Target Start/End: Complemental strand, 15496091 - 15495986
Alignment:
Q  177 agctcgtaggttattttttggttgtgttgatttgtggtgcttcatggtggttt-catggtggtgtagatactggatattttgtggtggtgctcgtggtgg 275  Q
    |||||||| ||| |||||| ||| |||||  |||||||| ||| ||||||||| ||||||||||  |||||| | | |||||||||||||||||||||||    
T  15496091 agctcgtacgttgtttttttgttatgttggattgtggtgtttcgtggtggttttcatggtggtgctgatacttggtcttttgtggtggtgctcgtggtgg 15495992  T
Q  276 tttttg 281  Q
    ||||||    
T  15495991 tttttg 15495986  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 191 - 280
Target Start/End: Original strand, 14351019 - 14351108
Alignment:
Q  191 tttttggttgtgttgatttgtggtgcttcatggtggttt-catggtggtgtagatactggatattttgtggtggtgctcgtggtggttttt 280  Q
    ||||| ||||||||| ||||||||| ||| ||||||||| |||| |||||| |||| ||||| |||||||||||| |||||||||||||||    
T  14351019 ttttttgttgtgttggtttgtggtggttcgtggtggttttcatg-tggtgttgatattggattttttgtggtggttctcgtggtggttttt 14351108  T

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Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 193 - 280
Target Start/End: Original strand, 26236725 - 26236813
Alignment:
Q  193 tttggttgtgttgatttgtggtgcttcatggtggttt-catggtggtgtagatactggatattttgtggtggtgctcgtggtggttttt 280  Q
    |||||||| |||| ||||||||||||||||||||||| |||| |||||  |||  ||  | ||||||||||||||||||||||||||||    
T  26236725 tttggttgcgttggtttgtggtgcttcatggtggttttcatgatggtgctgattttgagtcttttgtggtggtgctcgtggtggttttt 26236813  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 265
Target Start/End: Original strand, 2077366 - 2077425
Alignment:
Q  207 tttgtggtgcttcatggtggtttc-atggtggtgtagatactggatattttgtggtggtg 265  Q
    |||||||| |||| |||||||||| |||||||||| |||||||| | |||||||||||||    
T  2077366 tttgtggtacttcgtggtggtttccatggtggtgttgatactgggtcttttgtggtggtg 2077425  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 275
Target Start/End: Complemental strand, 10494960 - 10494882
Alignment:
Q  198 ttgtgttgatttgtggtgcttcatggtggttt-catggtggtgtagatactggatattttgtggtggtgctcgtggtgg 275  Q
    |||||||| |||| |||||||  || |||||| ||||||||||| |||| ||| | ||||||| |||||||||||||||    
T  10494960 ttgtgttggtttgcggtgctttgtgatggttttcatggtggtgttgatattgggtcttttgtgttggtgctcgtggtgg 10494882  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 227
Target Start/End: Original strand, 11408058 - 11408092
Alignment:
Q  193 tttggttgtgttgatttgtggtgcttcatggtggt 227  Q
    ||||||||||||| |||||||||||||||||||||    
T  11408058 tttggttgtgttggtttgtggtgcttcatggtggt 11408092  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 281
Target Start/End: Complemental strand, 11814863 - 11814774
Alignment:
Q  192 ttttggttgtgttgatttgtggtgcttcatggtggttt-catggtggtgtagatactggatattttgtggtggtgctcgtggtggtttttg 281  Q
    |||||||||||||  ||||||||||||| ||||||||| ||||||||||| | |||||| | |||  |||||||  |||||||| ||||||    
T  11814863 ttttggttgtgtttgtttgtggtgcttcgtggtggtttccatggtggtgttg-tactggttttttaatggtggtaatcgtggtgatttttg 11814774  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 280
Target Start/End: Complemental strand, 32058727 - 32058637
Alignment:
Q  191 tttttggttgtgttgatttgtggtgcttcatggtggtttcat-ggtggtgtagatactggatattttgtggtggtgctcgtggtggttttt 280  Q
    ||||||| ||||||| ||| ||||||||| ||||||||||   |||||||  |||||||  | |||||||| |||||| ||||||||||||    
T  32058727 tttttggctgtgttggtttatggtgcttcgtggtggtttccgcggtggtgatgatactgagtcttttgtggaggtgcttgtggtggttttt 32058637  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 227
Target Start/End: Original strand, 39709071 - 39709105
Alignment:
Q  193 tttggttgtgttgatttgtggtgcttcatggtggt 227  Q
    ||||||||||||| |||||||||||||||||||||    
T  39709071 tttggttgtgttggtttgtggtgcttcatggtggt 39709105  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 277
Target Start/End: Complemental strand, 29099703 - 29099646
Alignment:
Q  221 tggtggtttc-atggtggtgtagatactggatattttgtggtggtgctcgtggtggtt 277  Q
    |||||||||| |||||||||  |||||||| | || ||||||||||||||||||||||    
T  29099703 tggtggtttccatggtggtgctgatactgggtcttctgtggtggtgctcgtggtggtt 29099646  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 281
Target Start/End: Complemental strand, 34655027 - 34654938
Alignment:
Q  193 tttggttgtgttgatttgtggtgcttcatggtgg-tttcatggtggtgtagatactggatattttgtggtggtgctcgtggtggtttttg 281  Q
    |||| |||||||| ||||||||||||||||| || |||||||||||||  |||  ||||| ||| ||||  | ||||||||| |||||||    
T  34655027 tttgattgtgttggtttgtggtgcttcatggcggttttcatggtggtgctgattttggatctttggtggcagagctcgtggtagtttttg 34654938  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 209 - 284
Target Start/End: Complemental strand, 55728882 - 55728806
Alignment:
Q  209 tgtggtgcttcatggtggtttc-atggtggtgtagatactggatattttgtggtggtgctcgtggtggtttttgatg 284  Q
    ||||||| ||| |||||||||| |||||||||| ||||||| || |||||||||||||||||||||| |||||||||    
T  55728882 tgtggtggttcgtggtggtttccatggtggtgttgatactgaattttttgtggtggtgctcgtggtgatttttgatg 55728806  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 191 - 280
Target Start/End: Complemental strand, 38093424 - 38093334
Alignment:
Q  191 tttttggttgtgttgatttgtggtgcttcatggtggtttc-atggtggtgtagatactggatattttgtggtggtgctcgtggtggttttt 280  Q
    ||||| |||||||||  |||||||| |||  ||||||||| |||||||||| |||||||| | |||||||||||| |||||||||||||||    
T  38093424 tttttcgttgtgttgggttgtggtggttcgcggtggtttctatggtggtgttgatactgggttttttgtggtggtactcgtggtggttttt 38093334  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 276
Target Start/End: Original strand, 12469356 - 12469439
Alignment:
Q  194 ttggttgtgttgatttgtggtgcttcatggtggtt-tcatggtggtgtagatactggatattttgtggtggtgctcgtggtggt 276  Q
    |||||||||||| |||||||| |||||||||||||  ||||||||||  |||||| | | |||| |||||||||| ||||||||    
T  12469356 ttggttgtgttggtttgtggtccttcatggtggttaccatggtggtgctgatactaggtcttttttggtggtgcttgtggtggt 12469439  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 272
Target Start/End: Original strand, 12485480 - 12485559
Alignment:
Q  194 ttggttgtgttgatttgtggtgcttcatggtggtt-tcatggtggtgtagatactggatattttgtggtggtgctcgtgg 272  Q
    |||| ||||||| ||||||||||||||||||||||  ||||||||||  ||||| || | |||| | |||||||||||||    
T  12485480 ttggatgtgttggtttgtggtgcttcatggtggttaccatggtggtgccgatacggggtcttttatcgtggtgctcgtgg 12485559  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 281
Target Start/End: Complemental strand, 45873273 - 45873219
Alignment:
Q  227 tttcatggtggtgtagatactggatattttgtggtggtgctcgtggtggtttttg 281  Q
    ||||||||||||||  ||| ||| | ||||||||||||| |||||||||||||||    
T  45873273 tttcatggtggtgttaatattgggtcttttgtggtggtgttcgtggtggtttttg 45873219  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 281
Target Start/End: Original strand, 23054306 - 23054395
Alignment:
Q  193 tttggttgtgttgatttgtggtgcttcatggtgg-tttcatggtggtgtagatactggatattttgtggtggtgctcgtggtggtttttg 281  Q
    ||||||||||||| || ||||||||| |||| || |||||||||||||  |||  ||| | |||||||| || ||||||| |||||||||    
T  23054306 tttggttgtgttggttcgtggtgctttatggcggttttcatggtggtgctgattttgggtcttttgtggcggagctcgtgatggtttttg 23054395  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 281
Target Start/End: Original strand, 47518524 - 47518613
Alignment:
Q  193 tttggttgtgttgatttgtggtgcttcatggtgg-tttcatggtggtgtagatactggatattttgtggtggtgctcgtggtggtttttg 281  Q
    ||||||||||||  |||||||| ||||||||||| |||| ||||| ||  |||  ||||| |||||||||   |||||||||||||||||    
T  47518524 tttggttgtgttcgtttgtggtacttcatggtggttttcttggtgttgctgattttggatcttttgtggtaaggctcgtggtggtttttg 47518613  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 228
Target Start/End: Complemental strand, 6410037 - 6410005
Alignment:
Q  196 ggttgtgttgatttgtggtgcttcatggtggtt 228  Q
    |||||||||| ||||||||||||||||||||||    
T  6410037 ggttgtgttggtttgtggtgcttcatggtggtt 6410005  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 176 - 284
Target Start/End: Original strand, 21590470 - 21590579
Alignment:
Q  176 gagctcgtaggttattttttggttgtgttgatttgtggtgcttcatggtggtttc-atggtggtgtagatactggatattttgtggtggtgctcgtggtg 274  Q
    ||||||||||||| ||||| |||||||||  | ||||||| ||  |||| ||||| |||||||||  |||| ||| | ||||||||||| ||||||||||    
T  21590470 gagctcgtaggttgtttttcggttgtgtttgtctgtggtgttttgtggtagtttctatggtggtgctgatattgggtcttttgtggtggggctcgtggtg 21590569  T
Q  275 gtttttgatg 284  Q
    ||||||||||    
T  21590570 gtttttgatg 21590579  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 281
Target Start/End: Complemental strand, 3302624 - 3302535
Alignment:
Q  193 tttggttgtgttgatttgtggtgcttcatggtggttt-catggtggtgtagatactggatattttgtggtggtgctcgtggtggtttttg 281  Q
    ||||||||| ||| | ||||||||||||||   |||| ||||||||||| |||  ||| | |||||||| || |||||||||||||||||    
T  3302624 tttggttgtattggtatgtggtgcttcatgacagttttcatggtggtgttgattttgggtcttttgtggcggggctcgtggtggtttttg 3302535  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 191 - 275
Target Start/End: Complemental strand, 30845608 - 30845524
Alignment:
Q  191 tttttggttgtgttgatttgtggtgcttcatggtggttt-catggtggtgtagatactggatattttgtggtggtgctcgtggtgg 275  Q
    ||||||||||||||| ||| ||||||||| ||||||||| ||||||||||  |||||| | | |||||||||||||||||||||||    
T  30845608 tttttggttgtgttggtttatggtgcttcgtggtggtttccatggtggtgatgatacttg-tcttttgtggtggtgctcgtggtgg 30845524  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 281
Target Start/End: Complemental strand, 21881516 - 21881427
Alignment:
Q  193 tttggttgtgttgatttgtggtgcttcatggtggtt-tcatggtggtgtagatactggatattttgtggtggtgctcgtggtggtttttg 281  Q
    ||||||| ||||| |||||||||||||||||  ||| |||||||||||  |||  ||| | |||||| ||||  ||||||||||||||||    
T  21881516 tttggttatgttggtttgtggtgcttcatggcagttatcatggtggtgctgattttgggtcttttgttgtgggactcgtggtggtttttg 21881427  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 284
Target Start/End: Complemental strand, 20740627 - 20740535
Alignment:
Q  193 tttggttgtgttgatttgtggtgcttcatggtgg-tttcatggtggtgtagatactggatattttgtggtggtgctcgtggtggtttttgatg 284  Q
    ||||||||||||| ||| |||| ||||||||||| |||| ||||||||  |||  ||| | ||| |||| || ||||||||||||||| ||||    
T  20740627 tttggttgtgttggtttatggtacttcatggtggttttcttggtggtgctgattttgggtctttagtggcggggctcgtggtggttttggatg 20740535  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 193 - 276
Target Start/End: Original strand, 7767078 - 7767162
Alignment:
Q  193 tttggttgtgttgatttgtggtgcttcatgg-tggtttcatggtggtgtagatactggatattttgtggtggtgctcgtggtggt 276  Q
    ||||||||||||| |||||||||||||||||  |||||||||||||||| |||  ||| | |||||||| || ||||||||||||    
T  7767078 tttggttgtgttggtttgtggtgcttcatggcgggtttcatggtggtgttgattttgggtcttttgtggcggggctcgtggtggt 7767162  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 281
Target Start/End: Complemental strand, 40681075 - 40680983
Alignment:
Q  190 ttttttggttgtgttgatttgtggtgcttcatggtggtttc-atggtggtgtagatactggatattttgtggtggtgctcgtggtggtttttg 281  Q
    |||||| ||| |||||  |||||||| |||||||||||||  |||||||||| |||||| | | |||||||||||||||| ||||||||||||    
T  40681075 tttttttgttatgttggattgtggtgtttcatggtggtttttatggtggtgttgatacttggtcttttgtggtggtgctcatggtggtttttg 40680983  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 176 - 265
Target Start/End: Original strand, 26331046 - 26331136
Alignment:
Q  176 gagctcgtaggttattttttggttgtgttgatttgtggtgcttcatggtggtttc-atggtggtgtagatactggatattttgtggtggtg 265  Q
    ||||||||| |||  ||||| ||||||||| ||||||||||||| |||||||||| |||||||||| |||| ||  | |||||||||||||    
T  26331046 gagctcgtatgttgctttttagttgtgttggtttgtggtgcttcgtggtggtttctatggtggtgttgatattgagtcttttgtggtggtg 26331136  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 207 - 276
Target Start/End: Original strand, 40599874 - 40599944
Alignment:
Q  207 tttgtggtgcttcatggtggttt-catggtggtgtagatactggatattttgtggtggtgctcgtggtggt 276  Q
    ||||||||||||| ||||||||| || |||||||| |||||| | | ||||||||||||||||||||||||    
T  40599874 tttgtggtgcttcgtggtggttttcacggtggtgttgatactaggtcttttgtggtggtgctcgtggtggt 40599944  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 281
Target Start/End: Complemental strand, 7271883 - 7271794
Alignment:
Q  193 tttggttgtgttgatttgtggtgcttcatggtgg-tttcatggtggtgtagatactggatattttgtggtggtgctcgtggtggtttttg 281  Q
    ||||||||||||| ||||||||||||||||| || |||||||||||||  |||  ||| | |||||||| |  |||||||||||||||||    
T  7271883 tttggttgtgttggtttgtggtgcttcatggcggttttcatggtggtgctgattttgggtgttttgtggcgaggctcgtggtggtttttg 7271794  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 281
Target Start/End: Original strand, 27170162 - 27170251
Alignment:
Q  193 tttggttgtgttgatttgtggtgcttcatggtgg-tttcatggtggtgtagatactggatattttgtggtggtgctcgtggtggtttttg 281  Q
    ||||||||||||| ||||||||||||||||| || |||||||||||||   ||  ||| | |||||||| || |||| ||||||||||||    
T  27170162 tttggttgtgttggtttgtggtgcttcatggcggttttcatggtggtgctaattttgggtcttttgtggcggggctcatggtggtttttg 27170251  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 198 - 264
Target Start/End: Complemental strand, 12156544 - 12156477
Alignment:
Q  198 ttgtgttgatttgtggtgcttcatggtggtttc-atggtggtgtagatactggatattttgtggtggt 264  Q
    |||||||| ||||||||| ||| |||||||||| |||||||||| |||| ||| | ||||||||||||    
T  12156544 ttgtgttggtttgtggtggttcgtggtggtttccatggtggtgttgatattgggttttttgtggtggt 12156477  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 281
Target Start/End: Complemental strand, 18696982 - 18696893
Alignment:
Q  193 tttggttgtgttgatttgtggtgcttcatggtg-gtttcatggtggtgtagatactggatattttgtggtggtgctcgtggtggtttttg 281  Q
    ||||||||||||| ||||||||||||||||| |  |||||||||| ||  |||  ||||| |||||||  || ||||||||||| |||||    
T  18696982 tttggttgtgttggtttgtggtgcttcatggcgtttttcatggtgttgctgattttggatcttttgtgacggggctcgtggtggattttg 18696893  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 281
Target Start/End: Original strand, 24867064 - 24867140
Alignment:
Q  206 atttgtggtgcttcatggtggtttc-atggtggtgtagatactggatattttgtggtggtgctcgtggtggtttttg 281  Q
    |||| ||||||||| |||||||||| | | || | | |||||||| | |||| ||||||||||||||||||||||||    
T  24867064 atttatggtgcttcgtggtggtttccaagttgattttgatactgggtcttttatggtggtgctcgtggtggtttttg 24867140  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 281
Target Start/End: Complemental strand, 1895459 - 1895370
Alignment:
Q  193 tttggttgtgttgatttgtggtgcttcatggtgg-tttcatggtggtgtagatactggatattttgtggtggtgctcgtggtggtttttg 281  Q
    ||||||||||||| |||||||| ||||||||||| |||| ||||||| | |||  ||| | |||||||| || |||||||||||||||||    
T  1895459 tttggttgtgttggtttgtggtacttcatggtggttttcttggtggtattgattttgggtcttttgtggcggggctcgtggtggtttttg 1895370  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 281
Target Start/End: Complemental strand, 34660335 - 34660246
Alignment:
Q  193 tttggttgtgttgatttgtggtgcttcatggtgg-tttcatggtggtgtagatactggatattttgtggtggtgctcgtggtggtttttg 281  Q
    ||||||||||||| ||||||||||||||||| || |||||||||||||  |||  ||| | |||||||| |  |||||||||||||||||    
T  34660335 tttggttgtgttggtttgtggtgcttcatggcggttttcatggtggtgctgattttgggtgttttgtggcgaggctcgtggtggtttttg 34660246  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 281
Target Start/End: Complemental strand, 6705672 - 6705618
Alignment:
Q  227 tttcatggtggtgtagatactggatattttgtggtggtgctcgtggtggtttttg 281  Q
    |||||||||||||  |||||| | | |||||||||||||||||||||||||||||    
T  6705672 tttcatggtggtgctgatacttggtcttttgtggtggtgctcgtggtggtttttg 6705618  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 276
Target Start/End: Complemental strand, 9910804 - 9910734
Alignment:
Q  207 tttgtggtgcttcatggtggttt-catggtggtgtagatactggatattttgtggtggtgctcgtggtggt 276  Q
    ||||||||||||| ||||||||| |||| |||||| |||||||| | |||||| ||||||||| |||||||    
T  9910804 tttgtggtgcttcgtggtggtttccatgatggtgttgatactgggtcttttgtagtggtgctcatggtggt 9910734  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 281
Target Start/End: Complemental strand, 40900363 - 40900302
Alignment:
Q  221 tggtggtttc-atggtggtgtagatactggatattttgtggtggtgctcgtggtggtttttg 281  Q
    |||||||||| |||||||||  |||||||| | ||||||||||||||||||||||| |||||    
T  40900363 tggtggtttctatggtggtgctgatactgggtcttttgtggtggtgctcgtggtggcttttg 40900302  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 273
Target Start/End: Original strand, 14950329 - 14950412
Alignment:
Q  191 tttttggttgtgttgatttgtggtgcttcatggtggtttc-atggtggtgtagatactggatattttgtggtggtgctcgtggt 273  Q
    ||||| ||||||||| ||||||||| ||| |||||||||| |||||| ||| |||| ||  | ||||||||||||||| |||||    
T  14950329 ttttttgttgtgttggtttgtggtggttcgtggtggtttccatggtgatgttgatattgagttttttgtggtggtgcttgtggt 14950412  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 230 - 281
Target Start/End: Original strand, 38531292 - 38531343
Alignment:
Q  230 catggtggtgtagatactggatattttgtggtggtgctcgtggtggtttttg 281  Q
    ||||||||||  |||||||| | |||||||||||||||||||||| ||||||    
T  38531292 catggtggtgctgatactgggttttttgtggtggtgctcgtggtgatttttg 38531343  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 281
Target Start/End: Complemental strand, 3921641 - 3921552
Alignment:
Q  193 tttggttgtgttgatttgtggtgcttcatggtgg-tttcatggtggtgtagatactggatattttgtggtggtgctcgtggtggtttttg 281  Q
    ||||||||||||| |||||||| ||||| ||||| |||| ||||||||  |||  ||| |  ||||||| || |||||||||||||||||    
T  3921641 tttggttgtgttggtttgtggtacttcacggtggttttcttggtggtgctgattttgggtcatttgtggcggggctcgtggtggtttttg 3921552  T

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Target: scaffold0157 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 272
Target Start/End: Complemental strand, 34997 - 34918
Alignment:
Q  194 ttggttgtgttgatttgtggtgcttcatggtggtt-tcatggtggtgtagatactggatattttgtggtggtgctcgtgg 272  Q
    |||| ||||||| ||||||||||||||||||||||  ||||||||||  ||||| || | |||| | |||||||||||||    
T  34997 ttggatgtgttggtttgtggtgcttcatggtggttaccatggtggtgccgatacggggtcttttatcgtggtgctcgtgg 34918  T

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Target: scaffold0044 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 281
Target Start/End: Original strand, 42781 - 42866
Alignment:
Q  197 gttgtgttgatttgtggtgcttcatggtggtttc-atggtggtgtagatactggatattttgtggtggtgctcgtggtggtttttg 281  Q
    |||||||||  |||||||| |||  ||||||||| ||| || ||| |||||| | | |||||||||||| ||||||||||||||||    
T  42781 gttgtgttgggttgtggtggttcgcggtggtttctatgatgctgttgatactaggttttttgtggtggtactcgtggtggtttttg 42866  T

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