View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5226_low_20 (Length: 223)
Name: NF5226_low_20
Description: NF5226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5226_low_20 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 182; Significance: 1e-98; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 43061938 - 43062131
Alignment:
| Q |
18 |
aacacaacattgcatttgtcgggcaaaacccgggtgaaggtaaaggttgcattattgtttaatttcaatggaactttgaggtcacatttgaccttaggct |
117 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43061938 |
aacacaacattgcatttttcgggcaaaacccgggtgaaggtaaaggttgcattattgtttgatttcaatggaactttgaggtcacatttgaccttaggct |
43062037 |
T |
|
| Q |
118 |
tgtatgtgcgagatatcgagtctccaagtttgaacctaatcctgaagtagagcttcacatagataccataaactccaacactcttgcctttgct |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
43062038 |
tgtatgtgcgagatatcgagtctccaagtttgaacctaatcctgaagtagagcttcacatagataccataaactccaacactcttgtctttgct |
43062131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 82 - 202
Target Start/End: Original strand, 43054751 - 43054871
Alignment:
| Q |
82 |
tcaatggaactttgaggtcacatttgaccttaggcttgtatgtgcgagatatcgagtctccaagtttgaacctaatcctgaagtagagcttcacatagat |
181 |
Q |
| |
|
|||| |||||| ||||||| |||||||||||||| ||| | | | ||||| |||||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
43054751 |
tcaaaggaactgtgaggtcgcatttgaccttaggtttgaactttctggatatggagtctccaagtttaaacctaatcctaaagtagagcttcacatagat |
43054850 |
T |
|
| Q |
182 |
accataaactccaacactctt |
202 |
Q |
| |
|
| |||||||||||||| |||| |
|
|
| T |
43054851 |
atcataaactccaacattctt |
43054871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 82 - 209
Target Start/End: Original strand, 43049217 - 43049344
Alignment:
| Q |
82 |
tcaatggaactttgaggtcacatttgaccttaggcttgtatgtgcgagatatcgagtctccaagtttgaacctaatcctgaagtagagcttcacatagat |
181 |
Q |
| |
|
|||| |||||||||| ||||||||| |||||||||||||| | |||||| | || |||||| ||||||||||||| ||||| ||| |||||||||| |
|
|
| T |
43049217 |
tcaaaggaactttgaagtcacatttcaccttaggcttgtaatcacccgatatcaaatccccaagtctgaacctaatcctaaagtaaagcctcacatagat |
43049316 |
T |
|
| Q |
182 |
accataaactccaacactcttgcctttg |
209 |
Q |
| |
|
| |||||||| || |||||||| ||||| |
|
|
| T |
43049317 |
atcataaacttcatcactcttgtctttg |
43049344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 43024145 - 43024186
Alignment:
| Q |
161 |
gaagtagagcttcacatagataccataaactccaacactctt |
202 |
Q |
| |
|
||||||||| |||||||||||| |||||||| |||||||||| |
|
|
| T |
43024145 |
gaagtagagtttcacatagatatcataaacttcaacactctt |
43024186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University