View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5226_low_3 (Length: 511)
Name: NF5226_low_3
Description: NF5226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5226_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 467; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 17 - 499
Target Start/End: Complemental strand, 43024419 - 43023937
Alignment:
| Q |
17 |
acatggtgctcaacttcaccgcttgcaacccaaacaaaaaactcaacttctattacgacaaagttgaggcacgagcattctacgaaggttcaaggttggc |
116 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43024419 |
acatggtgctcaacttcaccgctcgcaacccaaacaaaaaactcaacttctattacgacaaagttgaggcacgagcattctacgaaggttcaaggttggc |
43024320 |
T |
|
| Q |
117 |
gaatgtggatgtgatcacagccatgaattcattccgccaatttaagaagagcagtgatcctatgagcggtgttttctcaggacaacggttattgatgctc |
216 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43024319 |
gaatgtggatgtgatcacagctatgaattcattccgccaatttaagaagagcagtgatcctatgagcggtgttttctcaggacaacggttattgatgctc |
43024220 |
T |
|
| Q |
217 |
gacaataatcaagtctctgagtttagcaaagataagagtgttgaagtttatgatatctatgtgaaactctacttcgaaattagattcagactcgggaatg |
316 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43024219 |
gacaataatcaagtctctgagtttaacaaagataagagtgttgaagtttatgatatctatgtgaaactctacttcgaaattagattcagactcgggaatg |
43024120 |
T |
|
| Q |
317 |
tgatatttggtcgtatcaatccgaaagtgaaatgtgacctcaaagttcctttgaattctaagaatacctccactcagcttgtgcccaccaagtgcgatgt |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
43024119 |
tgatatttggtcgtatcaatccgaaagtgaaatgtgacctcaaagttcctttgaattctaagaataccttcactcagcttgtgcccaccaagtgcgatgt |
43024020 |
T |
|
| Q |
417 |
tgatctctactaacttgcgcctctgatggatcgttttcttggcacagcagtattgattgggatttgtctcttcacactatttt |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43024019 |
tgatctctactaacttgcgcctctgatggatcgttttcttggcacagcagtattgattgggatttgtctcttcacactatttt |
43023937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 17 - 377
Target Start/End: Complemental strand, 43049570 - 43049210
Alignment:
| Q |
17 |
acatggtgctcaacttcaccgcttgcaacccaaacaaaaaactcaacttctattacgacaaagttgaggcacgagcattctacgaaggttcaaggttggc |
116 |
Q |
| |
|
||||||||||||||||||| || | || |||||||||||||||||| ||||||| || ||||| ||||||||||||||||||||||| |||||||| || |
|
|
| T |
43049570 |
acatggtgctcaacttcacagcacgtaatccaaacaaaaaactcaacatctattatgataaagtggaggcacgagcattctacgaagggtcaaggtttgc |
43049471 |
T |
|
| Q |
117 |
gaatgtggatgtgatcacagccatgaattcattccgccaatttaagaagagcagtgatcctatgagcggtgttttctcaggacaacggttattgatgctc |
216 |
Q |
| |
|
||||| |||||||||||| |||||| ||||| ||||||| ||||||||||| | || ||||| | ||||||||||||||||| | || ||||| |
|
|
| T |
43049470 |
caatgttgatgtgatcacacacatgaactcatttcgccaatacaagaagagcagcaaccccatgagtgctgttttctcaggacaacatgttttcgtgctc |
43049371 |
T |
|
| Q |
217 |
gacaataatcaagtctctgagtttagcaaagataagagtgttgaagtttatgatatctatgtgaaactctacttcgaaattagattcagactcgggaatg |
316 |
Q |
| |
|
|||| |||||||||| ||||||| |||||| ||||||| ||||||||||||||||||||||| || ||||| ||||| |||||||| ||| || |
|
|
| T |
43049370 |
gacagcgatcaagtctccgagtttaacaaagacaagagtgatgaagtttatgatatctatgtgaggctttactttaggattaggttcagacttggggatt |
43049271 |
T |
|
| Q |
317 |
tgatatttggtcgtatcaatccgaaagtgaaatgtgacctcaaagttcctttgaattctaa |
377 |
Q |
| |
|
|||||| ||| | ||| || || |||||||||||| ||||||||||||||| |||||| |
|
|
| T |
43049270 |
tgatatcgggtgattacaagcctaaggtgaaatgtgacttcaaagttcctttgagttctaa |
43049210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 17 - 291
Target Start/End: Complemental strand, 43062355 - 43062081
Alignment:
| Q |
17 |
acatggtgctcaacttcaccgcttgcaacccaaacaaaaaactcaacttctattacgacaaagttgaggcacgagcattctacgaaggttcaaggttggc |
116 |
Q |
| |
|
||||||||||||| ||||| || |||||||||||||||||| | | |||||||||| |||||||| || ||||| ||||| ||||| || || || || |
|
|
| T |
43062355 |
acatggtgctcaatttcacagcacacaacccaaacaaaaaacttagcatctattacgataaagttgaagctcgagctttctatgaaggatcgagatttgc |
43062256 |
T |
|
| Q |
117 |
gaatgtggatgtgatcacagccatgaattcattccgccaatttaagaagagcagtgatcctatgagcggtgttttctcaggacaacggttattgatgctc |
216 |
Q |
| |
|
||||| |||||||||||| |||||| || || |||||| ||||| | ||||| || ||||| || ||||||| ||||||| ||| ||| | ||| |
|
|
| T |
43062255 |
aaatgtcgatgtgatcacacacatgaactcgtttcgccaaaacaagaaaactagtgaccccatgagtggcgttttcttaggacaaaagttgttggtactc |
43062156 |
T |
|
| Q |
217 |
gacaataatcaagtctctgagtttagcaaagataagagtgttgaagtttatgatatctatgtgaaactctacttc |
291 |
Q |
| |
|
|||||| |||||||||| || || |||||||| |||||||||| |||||||| |||||||||||| ||||||||| |
|
|
| T |
43062155 |
gacaatgatcaagtctcggaattcagcaaagacaagagtgttggagtttatggtatctatgtgaagctctacttc |
43062081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 17 - 290
Target Start/End: Complemental strand, 43055104 - 43054831
Alignment:
| Q |
17 |
acatggtgctcaacttcaccgcttgcaacccaaacaaaaaactcaacttctattacgacaaagttgaggcacgagcattctacgaaggttcaaggttggc |
116 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||| | |||| |||||||||||||| || | ||||||||| ||||| || ||||| | |
|
|
| T |
43055104 |
acatggtgctcaacttcacatcccacaacccaaacaaaaaacttggcatctactacgacaaagttgaagctcaagcattctatgaagggtcgaggttttc |
43055005 |
T |
|
| Q |
117 |
gaatgtggatgtgatcacagccatgaattcattccgccaatttaagaagagcagtgatcctatgagcggtgttttctcaggacaacggttattgatgctc |
216 |
Q |
| |
|
||||| ||||| |||||| |||||| ||||| || ||| ||||||| || |||| |||| ||||||||| || || ||| ||||||||||| |
|
|
| T |
43055004 |
taatgtagatgttatcacacacatgaactcatttcgtcaagacaagaagaatagcaatcccatgaccggtgttttttctggtcaaaaactattgatgctc |
43054905 |
T |
|
| Q |
217 |
gacaataatcaagtctctgagtttagcaaagataagagtgttgaagtttatgatatctatgtgaaactctactt |
290 |
Q |
| |
|
|||||| ||||| | || ||||| | ||||||||||| ||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
43054904 |
gacaatgatcaaatttcggagttcaacaaagataagaatgttggagtttatgatatctatgtgaagctctactt |
43054831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University