View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5226_low_6 (Length: 454)
Name: NF5226_low_6
Description: NF5226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5226_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 198 - 430
Target Start/End: Original strand, 14784814 - 14785044
Alignment:
| Q |
198 |
gtaacgagatgtaaaaaattcaaatgaactttttatgggttaagtatgaccaatctcgcagaccccgtcttgtggggcaagacatttgttgtcttccaaa |
297 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
14784814 |
gtaacgagatgtaaaaaattcaaatgaacattttatgggttaaatatgac-aatctcgcagaccc-gtcttgtggggcaagacatttgttgtcttccaaa |
14784911 |
T |
|
| Q |
298 |
gaatgagggtggcctagacataagagacctcatcagatgaatgacgcttttcttacgaagatgctttggaatgttataaccaaacttgatgacctttggt |
397 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14784912 |
gaatgagggtggcctagacataagagaactcatcagatgaatgatgcttttcttacgaagatgctttggaatgttataaccaaacttgatgacctttggt |
14785011 |
T |
|
| Q |
398 |
gcaagattctttatagtaagtgtgggagtaata |
430 |
Q |
| |
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||||| ||||||||||||||||||||||||||| |
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| T |
14785012 |
gcaaggttctttatagtaagtgtgggagtaata |
14785044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 14784654 - 14784813
Alignment:
| Q |
1 |
gtatttggaggcaaacataagttcaggtagagctaccaagggaaagtttcataacatcgttgacaaaattaaaagcagagtaagtggtttggaagcaaca |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14784654 |
gtatttggaggcaaacataagtccaggtagagctaccaagggaaagtttcataacatcgttgacaaaattaaaagcagagtaagtggtttggaagcaaca |
14784753 |
T |
|
| Q |
101 |
atgcttaagttttgatggcaaacttattccatctaaatcagctttgagctcttatcatac |
160 |
Q |
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|||||| ||||||||||||||||||| | ||||||||||| |||||||||||||||||| |
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| T |
14784754 |
atgcttgagttttgatggcaaacttacgctatctaaatcagttttgagctcttatcatac |
14784813 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 141; Significance: 9e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 43 - 430
Target Start/End: Complemental strand, 31116960 - 31116570
Alignment:
| Q |
43 |
aaagtttcataacatcgttgacaaaattaaaagcagagtaagtggtttggaagcaacaatgcttaagttttgatggcaaacttattccatctaaatcagc |
142 |
Q |
| |
|
|||||||||||||||| |||| |||||| ||| |||| ||||||||| |||||||| ||||||||||||||| | || ||||| | |||||||||||| |
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| T |
31116960 |
aaagtttcataacatcattgaaaaaattcaaaacagactaagtggtt-ggaagcaataatgcttaagttttgccgacagacttactttatctaaatcagc |
31116862 |
T |
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| Q |
143 |
tttgagctct-tatcatactatcatatgcagtattctaagcagcctaagaccctttgtaacgagatgtaaaaaat--tcaaatgaactttttatgggtta |
239 |
Q |
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|||||||| | || |||||||||||||||||||| |||||| ||||| |||||||||| ||| ||| |||||| ||||| || ||||||||||| | |
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| T |
31116861 |
tttgagctttataccatactatcatatgcagtatgctaagctccctaaaaccctttgtagcgaaatgaaaaaaaaaatcaaaggagctttttatgggatg |
31116762 |
T |
|
| Q |
240 |
agtatgaccaatctcgcagaccccgtcttgtggggcaagacatttgttgtcttccaaagaatgagggtggcctagacat-aagagacctcatcagatgaa |
338 |
Q |
| |
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| | |||||||| ||||||||| ||||||||| ||||||||||||||||| || |||||||||||||||| ||| |||||||||||||| ||||| |
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| T |
31116761 |
atattaaccaatcttgcagaccccatcttgtgggatgggacatttgttgtcttcctaaaaatgagggtggcctaggcattaagagacctcatcatatgaa |
31116662 |
T |
|
| Q |
339 |
tgacgcttttcttacgaagatgctttggaatgttataaccaaacttgatgacctttggtgcaagattctttatagtaagtgtgggagtaata |
430 |
Q |
| |
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|||| |||||||| ||||||||||| |||| | || ||||| ||||||||||| ||||| ||| ||||||||||||||| |||||| |||| |
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| T |
31116661 |
agacgtttttcttatgaagatgcttttgaatctgatcaccaagcttgatgacctatggtgtaagcttctttatagtaagtatgggaggaata |
31116570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 140; Significance: 4e-73; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 1 - 430
Target Start/End: Complemental strand, 48899382 - 48898953
Alignment:
| Q |
1 |
gtatttggaggcaaacataagttcaggtagagctaccaagggaaagtttcataacatcgttgacaaaattaaaagcagagtaagtggtttggaagcaaca |
100 |
Q |
| |
|
|||||||| ||| ||||| ||| ||||||||||||| | |||||||||||||||| || ||||||||||| ||| ||| ||||||||| |||||||||| |
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| T |
48899382 |
gtatttgggggctaacattagtgcaggtagagctactaggggaaagtttcataacgtcattgacaaaattcaaaatagactaagtggtt-ggaagcaaca |
48899284 |
T |
|
| Q |
101 |
atgcttaagttttgatggcaaacttattccatctaaatcagctttgagctct-tatcatactatcatatgcagtattctaagcagcctaagaccctttgt |
199 |
Q |
| |
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||||||| |||||| || | ||||| | |||||||| || |||||||||| || | |||||||||||||||||| |||||| ||||| | |||||| |
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| T |
48899283 |
atgctta-gttttgtcggtagacttactttatctaaattagttttgagctctataccttactatcatatgcagtatgctaagctccctaaaatgctttgt |
48899185 |
T |
|
| Q |
200 |
aacgagatgtaaaaaattcaaatgaactttttatgggttaagtatgaccaatctcgcagaccccgtcttgtggggcaagacatttgttgtcttccaaaga |
299 |
Q |
| |
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||||||||| |||||||||| | || ||||||||||||| | |||||||||||||| | ||| |||||| || ||||||||||||||||| |||| |
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| T |
48899184 |
aacgagatggaaaaaattcagaggagctttttatgggttgatactgaccaatctcgcaaaacccatcttgttggatgggacatttgttgtcttcctaaga |
48899085 |
T |
|
| Q |
300 |
atgagggtggcctagaca-taagagacctcatcagatgaatgacgcttttcttacgaagatgctttggaatgttataaccaaacttgatgacctttggtg |
398 |
Q |
| |
|
||||||||||||||| || ||| | ||||||| | ||||||||||||||||||| ||||||| |||||||| | || ||||| | | ||||||| ||||| |
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| T |
48899084 |
atgagggtggcctaggcattaaaaaacctcataatatgaatgacgcttttcttatgaagatgttttggaatctaatcaccaagcctaatgacctatggtg |
48898985 |
T |
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| Q |
399 |
caagattctttatagtaagtgtgggagtaata |
430 |
Q |
| |
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||| |||| |||||||||| |||||| |||| |
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| T |
48898984 |
taaggttctctatagtaagtatgggaggaata |
48898953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 281 - 396
Target Start/End: Original strand, 26084777 - 26084893
Alignment:
| Q |
281 |
atttgttgtcttccaaagaatgagggtggcctagacat-aagagacctcatcagatgaatgacgcttttcttacgaagatgctttggaatgttataacca |
379 |
Q |
| |
|
|||||||||||||| || | | |||||||| ||| ||| ||||||||||| || ||||||||||||||||| | ||||||| |||||||| | || || | |
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| T |
26084777 |
atttgttgtcttcccaaaattaagggtggcttaggcattaagagacctcaccatatgaatgacgcttttctaatgaagatgttttggaatttgatcacaa |
26084876 |
T |
|
| Q |
380 |
aacttgatgacctttgg |
396 |
Q |
| |
|
||| |||||||||||| |
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|
| T |
26084877 |
aaccagatgacctttgg |
26084893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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