View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5226_low_7 (Length: 409)
Name: NF5226_low_7
Description: NF5226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5226_low_7 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 19 - 399
Target Start/End: Original strand, 42892517 - 42892896
Alignment:
| Q |
19 |
atatgtctgttgtgttgcatggaaagtttgattccaaaatgaggttcaattttaatgatctttagtgcatcatttttagcttttatatttctagcatagt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42892517 |
atatgtctgttgtgttgcatggaaagtttgattccaaaatgaggttcaattttaatgatctttagtgcatcatttttagcttttatatttctagcatagt |
42892616 |
T |
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| Q |
119 |
cgacgtctatttgttttgtgagaaatcggttccataaactttgtttgtatttattttcagttgctttgccccgaaagtaccatctaataggagttactac |
218 |
Q |
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| T |
42892617 |
caacgtctatttgttttgtgagaaatcggttccataaactttgtttgtatttattttcagttgctttgccccgaaagtaccatctaataggagttactac |
42892716 |
T |
|
| Q |
219 |
cttacttgttctcctatcattcgatcttctgcactacaaattacagcaacattgctggcaacagctggtgaaaatatgtcatttcctcgtaagttttaat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42892717 |
cttacttgttctcctatcattcgatcttctgcactacaaattacagcaacattgctggcaacagctggtgaaaatatgtcatttcctcgtaagttttaat |
42892816 |
T |
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| Q |
319 |
ctatccaattattagtgttattctttattcatttgcccaacatctctaatatttgctgttttgtgtcatttagctcctttg |
399 |
Q |
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| T |
42892817 |
ctatcc-attattagtgttattctttattcatttgcccaacatctctaatatttgctgttttgtgtcatttagctcctttg |
42892896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 5e-26; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 30 - 190
Target Start/End: Original strand, 28908679 - 28908839
Alignment:
| Q |
30 |
gtgttgcatggaaagtttgattccaaaatgaggttcaattttaatgatctttagtgcatcatttttagcttttatatttctagcatagtcgacgtctatt |
129 |
Q |
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|||||||||||||||||||||| ||||| ||||||||| ||| ||| |||| ||||||||||||||| | ||||||||| ||| ||| ||||||| |
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| T |
28908679 |
gtgttgcatggaaagtttgattgcaaaacgaggttcaaattttatgtcctttcctgcatcatttttagcatatatatttctgttatacgcgatgtctatt |
28908778 |
T |
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| Q |
130 |
tgttttgtgagaaatcggttccataaactttgtttgtatttattttcagttgctttgcccc |
190 |
Q |
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|||||| | |||||| |||| || ||| ||||||||||||||||||| ||||||||||| |
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| T |
28908779 |
tgttttttcagaaataggtttcaaaaatattgtttgtatttattttcaactgctttgcccc |
28908839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 147 - 322
Target Start/End: Original strand, 28921974 - 28922155
Alignment:
| Q |
147 |
gttccataaactttgtttgtatttattttcagttgctttgccccgaaagtaccatctaataggagtt---actaccttacttgttctcctatcattcgat |
243 |
Q |
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|||||||||||| |||| |||||||||||||| |||||| |||| ||||| ||||| || || || || |||| ||||| | |||||||||| || |
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| T |
28921974 |
gttccataaactatgttggtatttattttcagctgctttaccccaaaagtgacatctgatgtgaattttaacgcccttgcttgtgcacctatcattccat |
28922073 |
T |
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| Q |
244 |
cttctgcactacaaattacagcaacattgctggcaacagctggtgaaaata---tgtcatttcctcgtaagttttaatctat |
322 |
Q |
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| T |
28922074 |
ctccggcagtacaaatttcagcaacattgccagcaacagttggtgagaataatctatcatttcctggtaagtttcaatctat |
28922155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 28921840 - 28921893
Alignment:
| Q |
22 |
tgtctgttgtgttgcatggaaagtttgattccaaaatgaggttcaattttaatg |
75 |
Q |
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|||||| ||||||||||||||||||||||| |||| ||||||||| |||||| |
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| T |
28921840 |
tgtctgctgtgttgcatggaaagtttgattggaaaacaaggttcaatattaatg |
28921893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 402
Target Start/End: Original strand, 28922212 - 28922253
Alignment:
| Q |
361 |
tctctaatatttgctgttttgtgtcatttagctcctttgcta |
402 |
Q |
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| T |
28922212 |
tctctaaattttgctgttttgtgtcatttagctcctctgcta |
28922253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 218 - 314
Target Start/End: Complemental strand, 112506 - 112410
Alignment:
| Q |
218 |
ccttacttgttctcctatcattcgatcttctgcactacaaattacagcaacattgctggcaacagctggtgaaaatatgtcatttcctcgtaagttt |
314 |
Q |
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||||||||||||||| | ||||| |||| | ||||| |||||| ||||| ||| |||| ||||||||||||||||| ||||||||||| |||||||| |
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| T |
112506 |
ccttacttgttctcccaacattccatctccggcactccaaatttcagcatcatcgctgacaacagctggtgaaaatttgtcatttcctagtaagttt |
112410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 218 - 314
Target Start/End: Original strand, 9325693 - 9325789
Alignment:
| Q |
218 |
ccttacttgttctcctatcattcgatcttctgcactacaaattacagcaacattgctggcaacagctggtgaaaatatgtcatttcctcgtaagttt |
314 |
Q |
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||||||||||||||| | ||||| |||| | ||||| |||||| ||||| ||| |||| |||||||| |||||||| ||||||||||| |||||||| |
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| T |
9325693 |
ccttacttgttctcccaacattccatctccggcactccaaatttcagcatcatcgctgacaacagcttgtgaaaatttgtcatttcctagtaagttt |
9325789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 219 - 314
Target Start/End: Complemental strand, 20461952 - 20461857
Alignment:
| Q |
219 |
cttacttgttctcctatcattcgatcttctgcactacaaattacagcaacattgctggcaacagctggtgaaaatatgtcatttcctcgtaagttt |
314 |
Q |
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|||||||||||||| | ||||| |||| | ||||| |||||| ||||| ||| |||| |||||||| |||||||| ||||||||||| |||||||| |
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| T |
20461952 |
cttacttgttctcccaacattccatctccggcactccaaatttcagcatcatcgctgacaacagctcgtgaaaatttgtcatttcctagtaagttt |
20461857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 219 - 314
Target Start/End: Complemental strand, 20464333 - 20464238
Alignment:
| Q |
219 |
cttacttgttctcctatcattcgatcttctgcactacaaattacagcaacattgctggcaacagctggtgaaaatatgtcatttcctcgtaagttt |
314 |
Q |
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|||||||||||||| | ||||| |||| | ||||| |||||| ||||| ||| |||| |||||||| |||||||| ||||||||||| |||||||| |
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| T |
20464333 |
cttacttgttctcccaacattccatctccggcactccaaatttcagcatcatcgctgacaacagctcgtgaaaatttgtcatttcctagtaagttt |
20464238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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