View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5226_low_8 (Length: 394)
Name: NF5226_low_8
Description: NF5226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5226_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 380
Target Start/End: Complemental strand, 38609092 - 38608721
Alignment:
| Q |
18 |
caaagtactgtcacaatatggtttgttatactt-ttgcaaatgatactcgtgttttggtgacattttggtatgcattggcaaataagggtcttgttgatt |
116 |
Q |
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| T |
38609092 |
caaagtactgtcacaatatggtttgtgatactgattgccaatgatactcgtgctttggtgacattttggtatgtattggcaaataagggttttgttgatt |
38608993 |
T |
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| Q |
117 |
a--------gctctctatggatatgctacgttgttcnnnnnnncctagtagttatttattctcatatcgtttcttaggttgcatatattgagggtgactt |
208 |
Q |
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| T |
38608992 |
atttgattagctctgtatggatatgctacgttgttctttttttcctagtagttatttattctcatatcgtttcttaggttgcatatattgagggtgactt |
38608893 |
T |
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| Q |
209 |
gtttaaaccgaacactgtatgttctagttaggttgcatgtgatgaggctggctggcttgtttaaactaaggaatgtacgttctagtttagttgtacagaa |
308 |
Q |
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| T |
38608892 |
gtttaaaccgaacaatgtatgttctagttaggttgcatgtgatgaggctggctggcttgtttaaactaaggaatgtacgttctagttaagttgtacagaa |
38608793 |
T |
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| Q |
309 |
gcttaacgagttcatattgatttgttcaattcaggaatctaaaaaggagaagagcagtgactttaaagatga |
380 |
Q |
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| T |
38608792 |
gcttaacgagttcatattgatcttttcaattcaggaatctaaaaaggagaagagcagtgactttaaatatga |
38608721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 373
Target Start/End: Complemental strand, 38603625 - 38603584
Alignment:
| Q |
332 |
gttcaattcaggaatctaaaaaggagaagagcagtgacttta |
373 |
Q |
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| T |
38603625 |
gttcatttcaggaatctaaaaagcagaagagcagtgagttta |
38603584 |
T |
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