View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5227-Insertion-2 (Length: 140)
Name: NF5227-Insertion-2
Description: NF5227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5227-Insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 43; Significance: 8e-16; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 6969356 - 6969437
Alignment:
| Q |
10 |
atgtattttattttcccctcttcaacaagtttctttagctcccccaatcttacaaagaaaaccaaaaaagttgaagtcatcacaca |
95 |
Q |
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| T |
6969356 |
atgtattttatttttccctcttcaacgagtttcttaagct-ccccaatcttagaaa-aaaacc--aaaagttgaagtcatcacaca |
6969437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 6922113 - 6922193
Alignment:
| Q |
10 |
atgtattttattttcccctcttcaacaagtttctttagctcccccaatcttacaaagaaaaccaaaaaagttgaagtcatcacaca |
95 |
Q |
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| T |
6922113 |
atgtattttatttttccctcttcaacaagttttttaagctctccga-tcttacaaagaaaaccaa----gttgaagtcaccacaca |
6922193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 10 - 74
Target Start/End: Complemental strand, 6956099 - 6956036
Alignment:
| Q |
10 |
atgtattttattttcccctcttcaacaagtttctttagctcccccaatcttacaaagaaaaccaa |
74 |
Q |
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| T |
6956099 |
atgtattttatttttccctcttcaacaagttttttaagct-ctccgatcttacaaagaaaaccaa |
6956036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 136
Target Start/End: Original strand, 6923942 - 6923979
Alignment:
| Q |
99 |
atatttccaacatcaggtctatttataattatttgata |
136 |
Q |
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| T |
6923942 |
atatctccaacatcaggtctatttataattatttgata |
6923979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 41
Target Start/End: Complemental strand, 6958916 - 6958885
Alignment:
| Q |
10 |
atgtattttattttcccctcttcaacaagttt |
41 |
Q |
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| T |
6958916 |
atgtattttattttgccctcttcaacaagttt |
6958885 |
T |
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