View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5227_high_1 (Length: 317)
Name: NF5227_high_1
Description: NF5227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5227_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 19 - 297
Target Start/End: Complemental strand, 48754939 - 48754661
Alignment:
| Q |
19 |
cacagaataagaaaacaaataccgtcagaggaaaggaaattacaatggggagaatatgagggtaacctcatgtgcaagaaagaaataaaaaacaagaagt |
118 |
Q |
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| T |
48754939 |
cacaaaataagaaaacaaataccgtcagaggaaaggaaattacaatggggagaatatgagggtaacctcatgtgtaagaaagaaataaaaaacaagaaat |
48754840 |
T |
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| Q |
119 |
gtagtaagaccgtccaatactttcggcatataaaaaacggtttttaaacaaaaccttagaacttcgaaaaagcaccaatgacacgctaagacaattcatg |
218 |
Q |
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| T |
48754839 |
gtagtaagaccgtccaatacgttcgacatataaaaaacggtttttaaacaaaaccttagaacttcgaaaaagcaccaatgacacgctaagacaattcatg |
48754740 |
T |
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| Q |
219 |
tctcagatcaaggttaatgttattggtttcacccaaaaaataataataatgtttaatgagccccagttaaagatgaggc |
297 |
Q |
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| T |
48754739 |
tctcagatcaaggttaatgttaatggtttcacccaaaaaataataataatgtttaatgagccccagttaaagatgaggc |
48754661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 24 - 297
Target Start/End: Original strand, 52090699 - 52090967
Alignment:
| Q |
24 |
aataagaaaacaaataccgtcagaggaaaggaaattacaatggggagaatatgagggtaacctcatgtgcaagaaagaaataaaaaacaagaagtgtagt |
123 |
Q |
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| T |
52090699 |
aataagaaaacaaatactgtcagagggaaggaaattacaatgaggagaacacgagggtaacatcatgcg--agaaagaatttaaaaacaagaaatgtaga |
52090796 |
T |
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| Q |
124 |
aagaccgtccaatactttcggcatataaaaaacggtttttaaacaaaaccttagaacttcgaaaaagcaccaatgacacgctaagacaattcatgtctca |
223 |
Q |
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| T |
52090797 |
aagaccgtccaatactt-cggcgtataaaaat-ggcttttaaacaaaaccttaaaacattgaaaaagcaccaatgacatgctaaaacaatccatgtctca |
52090894 |
T |
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| Q |
224 |
gatcaaggttaatgtt-attggtttcacccaaaaaataataataatgtttaatgagccccagttaaagatgaggc |
297 |
Q |
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| T |
52090895 |
gatcaaggttaatgttaaatggtttcacccaaaga--gaaaataatgtttaatgagccccatttaaaaatgaggc |
52090967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 103
Target Start/End: Complemental strand, 38463245 - 38463172
Alignment:
| Q |
30 |
aaaacaaataccgtcagaggaaaggaaattacaatggggagaatatgagggtaacctcatgtgcaagaaagaaa |
103 |
Q |
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| T |
38463245 |
aaaactaatactgtcagagagaaggaaattacaatggggaggatatgagggcatccttgtgttcaagaaagaaa |
38463172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 236
Target Start/End: Complemental strand, 38463142 - 38463009
Alignment:
| Q |
105 |
aaaaaacaagaagtgtagtaagaccgtccaatactttcggcatataaaaaacggttttta---aacaaaaccttagaacttcgaaaaagcaccaatgaca |
201 |
Q |
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|||||||||||| || || |||||||| |||||| |||||| ||||||||| |||||| | |||| | ||||| ||||||||| ||||||||| || | |
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| T |
38463142 |
aaaaaacaagaaatgaagaaagaccgttcaatac-ttcggcttataaaaaatggttttaacacaacacagccttaaaacttcgaacaagcaccaaagata |
38463044 |
T |
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| Q |
202 |
cgctaagacaattcatgtctcagatcaaggttaat |
236 |
Q |
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| T |
38463043 |
tgctaaaacaaatcatgcctcaaaccaaagttaat |
38463009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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