View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5227_high_2 (Length: 279)
Name: NF5227_high_2
Description: NF5227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5227_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 263
Target Start/End: Original strand, 1245710 - 1245954
Alignment:
| Q |
17 |
atcgtcttcatcccttttatctcctcggctgtacaagattcaaaagcagcattcacttccacaaaacatggaggcgaggaagttggataaagggaagaaa |
116 |
Q |
| |
|
|||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1245710 |
atcgtcttcatcacgtttatctcctcggctttacaagattcaaaagcagcattcacttccacaaaacatggaggcgaggaagttggataaagggaagaaa |
1245809 |
T |
|
| Q |
117 |
attctaatgcctagtattagtagccattttcctaggnnnnnnngcttgcaggttgagagaggacttccttcttaccttccaggtgagactcctttgtgaa |
216 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1245810 |
attctaatgcctagtattagtagcctttttcctaggaaaaaaagcttgcaggttgagagaggacttccttcttaccttccaggtgagactcctttgtg-- |
1245907 |
T |
|
| Q |
217 |
aaatttgttctaattttgtgcgaggagcatgttgatttatgtgagag |
263 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
1245908 |
aaatttgttctaattttgtgagagtagcatgttgatttatgtgagag |
1245954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 10 - 263
Target Start/End: Original strand, 42010365 - 42010616
Alignment:
| Q |
10 |
catcatcatcgtcttcatcccttttatctcctcggctgtacaagattcaaaagcagcattcacttccacaaaacatggaggcgaggaagttggataaagg |
109 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
42010365 |
catcatcatcgtcttcatcacgtttatctcctcggctttacaagattcaaaagcagcattcacttccacaaaacatggaggcgaggaagttggaaaaagg |
42010464 |
T |
|
| Q |
110 |
gaagaaaattctaatgcctagtattagtagccattttcctaggnnnnnnngcttgcaggttgagagaggacttccttcttaccttccaggtgagactcct |
209 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42010465 |
gaagaaaattctattgcctagtattagtagcttttttcctaggaaaaaaagcttgcaggttgagagaggacttccttcttaccttccaggtgagactcct |
42010564 |
T |
|
| Q |
210 |
ttgtgaaaaatttgttctaattttgtgcgaggagcatgttgatttatgtgagag |
263 |
Q |
| |
|
||||| |||||||||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
42010565 |
ttgtg--aaatttgttctaattttgtgagagtagcatgttgatttatgtgagag |
42010616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University