View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5227_low_4 (Length: 244)
Name: NF5227_low_4
Description: NF5227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5227_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 36172029 - 36171796
Alignment:
| Q |
1 |
tcatcacactcacacaatcaagaaaattgatttcccatatttaggaacttgtacttccacaattcacgccgcaaattattttaagcaaagtacttnnnnn |
100 |
Q |
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| T |
36172029 |
tcatcacactcacacaatcaagaaaattgatttcccatatttaggaacttgtacttccacaattcacgccgcaaattattttaagcaaagtacttaaaaa |
36171930 |
T |
|
| Q |
101 |
nnccagagaaaacaaacataagggtaatgtaaattatataatgatgtatgattaatgatcattctatgctcttatcttaaaaagttcacgtgcaacaagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
36171929 |
aaccagagaaaacaaacataagggtaatgtaaattatataatgatgtatgattaatgatcattctatgctcttatcttaaaaagttcacgagcaacaagc |
36171830 |
T |
|
| Q |
201 |
atgtggacaaacgtcatgtttacaatcttgatga |
234 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
36171829 |
atgtggacaaacgtcatgtttacaatcttgatga |
36171796 |
T |
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