View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5227_low_5 (Length: 224)
Name: NF5227_low_5
Description: NF5227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5227_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 134; Significance: 7e-70; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 37 - 206
Target Start/End: Complemental strand, 6959082 - 6958913
Alignment:
| Q |
37 |
tagagaacaaaacataatgtttgtaaactaaatatcacacctgcaagttggaattacgtcttcctcgacatctcttgaccacagtgaccactccaactgc |
136 |
Q |
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| T |
6959082 |
tagagaacaaaacataatatttgtaaactaaatatcacacctgcaagttggaattacgtcttcctcaacatctcttgaccacagtgaccactccaactgc |
6958983 |
T |
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| Q |
137 |
acagctgttatcggatgaactgcgtgtgctcttctgattgttgcaggcgaggcctcagacaaaccgatgt |
206 |
Q |
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| T |
6958982 |
acagctgttattggatgaactgcatgtgctcttctgattgttgaagctgaggcttcagacaaaccaatgt |
6958913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 37 - 206
Target Start/End: Original strand, 6921949 - 6922116
Alignment:
| Q |
37 |
tagagaacaaaacataatgtttgtaaactaaatatcacacctgcaagttggaattacgtcttcctcgacatctcttgaccacagtgaccactccaactgc |
136 |
Q |
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| T |
6921949 |
tagataacaaaacacaatgtttgcaaactaaat-tc-cacctgcaagttggaattatgtcttcctcgacatctcttgaccatagtgaccactccaactgc |
6922046 |
T |
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| Q |
137 |
acagctgttatcggatgaactgcgtgtgctcttctgattgttgcaggcgaggcctcagacaaaccgatgt |
206 |
Q |
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| T |
6922047 |
acagctgttattggatgaactgcatgtgctcttctgattgttgcagctgaggcctcagacaaaccaatgt |
6922116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 37 - 206
Target Start/End: Complemental strand, 6956263 - 6956096
Alignment:
| Q |
37 |
tagagaacaaaacataatgtttgtaaactaaatatcacacctgcaagttggaattacgtcttcctcgacatctcttgaccacagtgaccactccaactgc |
136 |
Q |
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| T |
6956263 |
tagataacaaaacacaatgtttgcaaactaaat-tc-cacctgcaagttggaattatgtcttcctcgacatctcttgaccatagtgaccactccaactgc |
6956166 |
T |
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| Q |
137 |
acagctgttatcggatgaactgcgtgtgctcttctgattgttgcaggcgaggcctcagacaaaccgatgt |
206 |
Q |
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| T |
6956165 |
acagctgttattggatgaactgcatgtgctcttctgattgttgcagctgaggcctcagacaaaccaatgt |
6956096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 42 - 206
Target Start/End: Original strand, 6969197 - 6969359
Alignment:
| Q |
42 |
aacaaaacataatgtttgtaaactaaatatcacacctgcaagttggaattacgtcttcctcgacatctcttgaccacagtgaccactccaactgcacagc |
141 |
Q |
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| T |
6969197 |
aacataacataatgtttgtaaactaaat--caaacctgcaagttggaattatttcttcttccacatctcttgaccatagcgaccactccaattgcacagc |
6969294 |
T |
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| Q |
142 |
tgttatcggatgaactgcgtgtgctcttctgattgttgcaggcgaggcctcagacaaaccgatgt |
206 |
Q |
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| T |
6969295 |
tgttattggatgaactgcatgtgctcttctgattgttgaagctgaggcttcagacaaaccaatgt |
6969359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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