View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5228-Insertion-1 (Length: 920)
Name: NF5228-Insertion-1
Description: NF5228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5228-Insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 811; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 811; E-Value: 0
Query Start/End: Original strand, 8 - 915
Target Start/End: Original strand, 32333076 - 32333983
Alignment:
| Q |
8 |
aaaggtatgaacataacataggaaaagtagtgaaacaaacctagatcagagaaaccccaaccaagaatgtcaatggcccatgtcttaataccagcttcct |
107 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
32333076 |
aaaggtatgaacataacataggaaaagtagtgaaacaaacctagatcagagaaaccccaaccaagaatgtcaatggcccatgtctcaataccagcttcct |
32333175 |
T |
|
| Q |
108 |
caagcaatggatatgtgtatctccattctaaacatgagctgaacaataaggaggagtgaaaaccaagggtaacttcagaaataaaatgaacaaaccaatt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
32333176 |
caagcaatggatatgtgtatctccattctaaacatgagctgaacaataaggaggagtgaaatccaagggtaacttcagaaataaaatgaacaaaccaatt |
32333275 |
T |
|
| Q |
208 |
ctgtctcctgcataattttttagcacctgtcaaaaccatgtaaaaggacaattggattttccttgttctgcaccagtggcttcacacaactactcatgat |
307 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32333276 |
ctgtctcctgcatatttttttagcacctgtcaaaaccatgtaaaaggacaattggattttccttgttctgcaccagtggcttcacacaactactcatgat |
32333375 |
T |
|
| Q |
308 |
aggattttcagagaacttaacctgtttgaattatatgcaaatatgtaacttttcaatattttatgagcaatcaaacaagaattacaatgtgaatatacgc |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32333376 |
aggattttcagagaacttaacctgtttgaattatatgcaaatatgtaacttttcaatattttatgagcaatcaaacaagaattacaatgtgaatatacgc |
32333475 |
T |
|
| Q |
408 |
aaagtattgattttannnnnnnnaacgggcaatgttagtattatgctgggagtggggatcaaactctcgacctccttgtcaatcaactctttaactcccc |
507 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
32333476 |
aaagtattgattttattttttttaacgggcaatgtaagtattatgctgggagtggggatcgaactct--acctccttgtcaatcaactctttaactcccc |
32333573 |
T |
|
| Q |
508 |
caccccagccaccaagctatctgtatatccccttacacaagtacttttgagtgactttaatcaggaattaagcaatagtgggatgattagtccaaagaag |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
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|
| T |
32333574 |
caccccagccaccaagctatctgtatatccccttacacaagtacttttgagtgactttaatcaagaattaagcaatagtgagatgattagtccaaagaag |
32333673 |
T |
|
| Q |
608 |
accttaagtaaggtgagacctaaagctaggagaagtcttatagtgaaaaaattatgggaagggattcataaacaaatcatatgcataatatctgttatgc |
707 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
32333674 |
accttaagtaaggtgagacctaaagctaggagaagtcttatagtgaaaaaattatgggaagggattcataaacaaatcatatgcataatatcttttatgc |
32333773 |
T |
|
| Q |
708 |
gtcaaaatggatgtgaaatcataaaattgacgcgtttcgtaggaggtgttgtgagtagggttagagacctaaaggaaggacttgaatggccttaacctta |
807 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32333774 |
gtcaaaatggatgtgaaatcataaaattgacgcgttgcgtaggaggtgttgtgagtaggattagagacctaaaggaaggacttgaatggccttaacctta |
32333873 |
T |
|
| Q |
808 |
gaccggctctgaatcaataaacagtgtgttagttatattcattaggtttttata-ttggactcatccttgc-aaaccgacctgtgaagtgaggattgtcc |
905 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
32333874 |
gaccggctctgaatcaataaacagtgtgttagttatatccattaggtttttatatttggactcatccttgcaaaaccgacccgtgaagtgaggattgtcc |
32333973 |
T |
|
| Q |
906 |
ccacttataa |
915 |
Q |
| |
|
|||||||||| |
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|
| T |
32333974 |
ccacttataa |
32333983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 437 - 540
Target Start/End: Original strand, 30590358 - 30590461
Alignment:
| Q |
437 |
caatgttagtattatgctgggagtggggatcaaactctcgacctccttgtcaatcaactctttaactcccccaccccagccaccaagctatctgtatatc |
536 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||| ||| |||| ||| ||| || |||| | ||||||||||||||||||||||||| ||| |||||| |
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|
| T |
30590358 |
caatgttagtattatgctgggattggagatcaaaacctcaaccttcttatcactccactcctcaactcccccaccccagccaccaagccatccatatatc |
30590457 |
T |
|
| Q |
537 |
ccct |
540 |
Q |
| |
|
|||| |
|
|
| T |
30590458 |
ccct |
30590461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 459 - 523
Target Start/End: Original strand, 20731907 - 20731971
Alignment:
| Q |
459 |
gtggggatcaaactctcgacctccttgtcaatcaactctttaactcccccaccccagccaccaag |
523 |
Q |
| |
|
||||||||| ||| ||| |||| ||| |||||| |||| ||||||||||||| |||||||||||| |
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| T |
20731907 |
gtggggatctaaccctcaaccttcttatcaatccactccttaactcccccactccagccaccaag |
20731971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 7e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 31 - 317
Target Start/End: Original strand, 19562121 - 19562405
Alignment:
| Q |
31 |
aaagtagtgaaacaaacctagatcagagaaaccccaaccaagaatgtcaatggcccatgtcttaataccagcttcctcaagcaatggatatgtgtatctc |
130 |
Q |
| |
|
|||||| | ||||||||||| ||||||||||||||||||||||||||| || ||||| |||| | ||||| ||| ||||||||||||||| |||||| |
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|
| T |
19562121 |
aaagtaataaaacaaacctaaatcagagaaaccccaaccaagaatgtcgatagcccaagtctcgaaaccagattcttcaagcaatggatatccatatctc |
19562220 |
T |
|
| Q |
131 |
cattctaaacatgagctgaacaataaggaggagtgaaaaccaagggt-aacttcagaaataaaatg-aacaaaccaattctgtctcctgcataatttttt |
228 |
Q |
| |
|
|||||||||||||| ||||| ||||| || | |||| ||| | ||||| || |||||||| || |||| |||| |||||| ||| || |||| |
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|
| T |
19562221 |
cattctaaacatgaactgaataataa-gacaatataaaattcaggatcaacttgag-cataaaatgtaaaaaactaattttgtctcttgc--aaattttg |
19562316 |
T |
|
| Q |
229 |
agcacctgtcaaaaccatgtaaaaggacaattggattttccttgttctgcaccagtggcttcacacaactactcatgataggattttca |
317 |
Q |
| |
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||||||| || |||||||||| ||| ||||| ||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
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|
| T |
19562317 |
agcacctatcgaaaccatgtagaagaacaatcggaggttccttgttctgcaccagtggcttcacacaactgctcatgatgggattttca |
19562405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 444 - 522
Target Start/End: Original strand, 29137263 - 29137341
Alignment:
| Q |
444 |
agtattatgctgggagtggggatcaaactctcgacctccttgtcaatcaactctttaactcccccaccccagccaccaa |
522 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| | | || | |||||||||||| ||| ||||||||||| |
|
|
| T |
29137263 |
agtattatgctgggagtggggatcaaaccctcgacctccttataactccaatctttaactccctcactccagccaccaa |
29137341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 442 - 522
Target Start/End: Complemental strand, 32676038 - 32675958
Alignment:
| Q |
442 |
ttagtattatgctgggagtggggatcaaactctcgacctccttgtcaatcaactctttaactcccccaccccagccaccaa |
522 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||| | || || ||| || |||| ||||||||| ||||| ||||||||| |
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|
| T |
32676038 |
ttagtattatgctggaagtggggatcaaaccctccatttctttatcactccactccttaactcccacaccctagccaccaa |
32675958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 457 - 510
Target Start/End: Complemental strand, 11524694 - 11524641
Alignment:
| Q |
457 |
gagtggggatcaaactctcgacctccttgtcaatcaactctttaactcccccac |
510 |
Q |
| |
|
||||||| |||||||||| |||||||| ||| || |||||||||||||||||| |
|
|
| T |
11524694 |
gagtgggaatcaaactcttgacctcctaatcactccactctttaactcccccac |
11524641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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