View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5228-Insertion-12 (Length: 474)
Name: NF5228-Insertion-12
Description: NF5228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5228-Insertion-12 |
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| [»] chr5 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 8 - 474
Target Start/End: Complemental strand, 7755273 - 7754806
Alignment:
| Q |
8 |
cctcttcaattcggcttcacggtgctactattgcttcatatcgtgaactaacnnnnnnnaagcctttactttctttggaatgatatataagtaaaaagat |
107 |
Q |
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| T |
7755273 |
cctcttcaattcggcttcacggtgctactattgcttcatatcgtgatctaacttttcttaagcctttactttctttggaatgatatataagtaaaaagat |
7755174 |
T |
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| Q |
108 |
ccaaaaagttaaatgtatttgatccaaattctatatcgaataaatttaactctttgaattttttgtctatatttcattcgagacgaagtatttcccaaca |
207 |
Q |
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| T |
7755173 |
ccaaaaagttaaatgtatttgatccaaattctatttcgaataaatttaactttttgaattttttgtctatatttcattcgagacgaagtatttgctaaca |
7755074 |
T |
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| Q |
208 |
atttaacacgttttacactctcttttctttgtcctgttttaatatgattgcttttgtgtagtgtggctatacttctccaacacaagagagtataatcagt |
307 |
Q |
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| T |
7755073 |
atttaacacgttttacactctcttttctttgtcctgttttaatatgattgcttttgtgtagtgtggctatacttctccaacgcaagagagtataatcagt |
7754974 |
T |
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| Q |
308 |
gatctaaacctctcactttcagaggttataatttaagtctgttcataattggttctaattttatttgaaggatgaactttattgatc--tatatatannn |
405 |
Q |
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| T |
7754973 |
gatctaaacctctcactttcagaggttataatttaagtctgttcataattggttctaattttatttgaaggatg-actttattgatctatatatatattt |
7754875 |
T |
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| Q |
406 |
nnnnnatactgtgttggaatcagttttctctatttggatctttatccaatgttggagccatggtgggag |
474 |
Q |
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| T |
7754874 |
tttttatactgtgttggaattagttttctctatttggatctttatccaatgttggagccatggtgggag |
7754806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 80 - 135
Target Start/End: Complemental strand, 7920069 - 7920013
Alignment:
| Q |
80 |
ctttggaatgatatataagtaaaaagatccaaaaa-gttaaatgtatttgatccaaa |
135 |
Q |
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| T |
7920069 |
ctttggaatgaaatataaccaaaaatatccaaaaaagttaaatgtatttggtccaaa |
7920013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 474
Target Start/End: Original strand, 32928125 - 32928172
Alignment:
| Q |
427 |
agttttctctatttggatctttatccaatgttggagccatggtgggag |
474 |
Q |
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| T |
32928125 |
agttttctctgtttggatctttatccaatgtgggtgctatggtgggag |
32928172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 149
Target Start/End: Complemental strand, 45335889 - 45335850
Alignment:
| Q |
110 |
aaaaagttaaatgtatttgatccaaattctatatcgaata |
149 |
Q |
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| T |
45335889 |
aaaaagttaaatgtatttgatccaaattttatatctaata |
45335850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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