View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5228-Insertion-14 (Length: 318)
Name: NF5228-Insertion-14
Description: NF5228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5228-Insertion-14 |
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Alignment Details
Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 8 - 168
Target Start/End: Original strand, 16380866 - 16381026
Alignment:
| Q |
8 |
catacaacttgaacacattctaaattcaacttgtacatagaatacacacatttttggaggattttacaagttataacatgttgtaaatttatggacacgg |
107 |
Q |
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| T |
16380866 |
catacaacttgaacacattctaaattcaacttgtacatagaatacacacatttttggaggattttacaagttataacatgttgtaaatttatggacacgg |
16380965 |
T |
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| Q |
108 |
ttgggaagcatgtcacattacaacttgtggtggcatatttcgtgatcacagaggttaggac |
168 |
Q |
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| T |
16380966 |
ttgggaagcatgtcacattacaacttgtggtggcatatttcgtgatcacaaaggttaggac |
16381026 |
T |
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Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 233 - 318
Target Start/End: Original strand, 16381091 - 16381176
Alignment:
| Q |
233 |
cttaagattacaaaattacaagatacaaagtcaaagcactatcacatattcctttgcatttcatggttcaaatgttttctacccac |
318 |
Q |
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| T |
16381091 |
cttaagattacaaaattacaagatacaaagtcaaagcactatcacatattcctctacatttcatggttcaaatgttttctacccac |
16381176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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