View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5228-Insertion-3 (Length: 881)

Name: NF5228-Insertion-3
Description: NF5228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5228-Insertion-3
NF5228-Insertion-3
[»] chr2 (17 HSPs)
chr2 (8-881)||(40059300-40060184)
chr2 (8-758)||(40085212-40085933)
chr2 (278-758)||(40077652-40078129)
chr2 (147-255)||(35056063-35056171)
chr2 (819-877)||(40078213-40078272)
chr2 (805-881)||(40085994-40086072)
chr2 (160-226)||(11344360-11344425)
chr2 (90-126)||(1830152-1830188)
chr2 (90-126)||(42419906-42419942)
chr2 (90-124)||(7103394-7103428)
chr2 (88-126)||(21616579-21616617)
chr2 (90-124)||(23974414-23974448)
chr2 (90-124)||(33197182-33197216)
chr2 (90-123)||(10619141-10619174)
chr2 (90-119)||(37419588-37419617)
chr2 (182-274)||(40077535-40077628)
chr2 (89-126)||(43985322-43985359)
[»] chr7 (12 HSPs)
chr7 (490-597)||(35052652-35052758)
chr7 (15-65)||(35052814-35052864)
chr7 (90-126)||(30812251-30812287)
chr7 (90-126)||(44822071-44822107)
chr7 (160-227)||(7244630-7244696)
chr7 (157-195)||(23918916-23918954)
chr7 (157-227)||(27121659-27121728)
chr7 (160-214)||(28178910-28178963)
chr7 (89-118)||(7612551-7612580)
chr7 (89-126)||(9210934-9210971)
chr7 (90-127)||(39551469-39551506)
chr7 (90-127)||(44917447-44917484)
[»] chr5 (12 HSPs)
chr5 (471-588)||(12735460-12735579)
chr5 (471-588)||(12798287-12798406)
chr5 (90-126)||(9107203-9107239)
chr5 (90-126)||(32010058-32010094)
chr5 (90-126)||(32197846-32197882)
chr5 (94-125)||(40111382-40111413)
chr5 (15-65)||(12735614-12735664)
chr5 (15-65)||(12798441-12798491)
chr5 (90-128)||(17369314-17369352)
chr5 (157-227)||(35135735-35135804)
chr5 (89-126)||(14706204-14706241)
chr5 (90-119)||(40335794-40335823)
[»] chr4 (17 HSPs)
chr4 (683-758)||(22015579-22015654)
chr4 (361-446)||(22015825-22015910)
chr4 (514-591)||(22015667-22015744)
chr4 (90-126)||(22662172-22662208)
chr4 (90-126)||(22666651-22666687)
chr4 (90-126)||(25571372-25571408)
chr4 (90-126)||(27043751-27043787)
chr4 (90-126)||(41336873-41336909)
chr4 (90-122)||(52315118-52315150)
chr4 (90-121)||(52428782-52428813)
chr4 (157-227)||(30024628-30024697)
chr4 (157-227)||(54325110-54325179)
chr4 (90-119)||(3891711-3891740)
chr4 (93-126)||(9720578-9720611)
chr4 (89-126)||(19305039-19305076)
chr4 (175-264)||(20907064-20907152)
chr4 (89-126)||(37636106-37636143)
[»] chr3 (12 HSPs)
chr3 (471-597)||(53322735-53322862)
chr3 (88-126)||(26911704-26911742)
chr3 (90-126)||(25447166-25447202)
chr3 (91-126)||(33405114-33405149)
chr3 (90-125)||(26990146-26990181)
chr3 (160-227)||(44374720-44374786)
chr3 (90-124)||(31615481-31615515)
chr3 (157-223)||(35708251-35708316)
chr3 (15-65)||(53322651-53322700)
chr3 (157-261)||(4534428-4534530)
chr3 (90-119)||(32582857-32582886)
chr3 (89-126)||(41848636-41848673)
[»] chr1 (8 HSPs)
chr1 (89-127)||(17009502-17009540)
chr1 (89-126)||(30257797-30257834)
chr1 (90-126)||(6292605-6292641)
chr1 (91-126)||(2522709-2522744)
chr1 (90-119)||(172494-172523)
chr1 (90-119)||(29045854-29045883)
chr1 (89-126)||(29793618-29793655)
chr1 (90-119)||(30014000-30014029)
[»] chr8 (5 HSPs)
chr8 (90-126)||(38602440-38602476)
chr8 (90-128)||(2606160-2606198)
chr8 (90-128)||(6496812-6496850)
chr8 (93-126)||(6950435-6950468)
chr8 (90-119)||(10727464-10727493)
[»] chr6 (6 HSPs)
chr6 (90-126)||(4308890-4308926)
chr6 (90-126)||(30536886-30536922)
chr6 (95-126)||(7351597-7351628)
chr6 (160-193)||(2205644-2205677)
chr6 (157-261)||(4006610-4006711)
chr6 (157-226)||(24836272-24836340)
[»] scaffold0024 (1 HSPs)
scaffold0024 (157-223)||(27508-27573)


Alignment Details
Target: chr2 (Bit Score: 734; Significance: 0; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 734; E-Value: 0
Query Start/End: Original strand, 8 - 881
Target Start/End: Original strand, 40059300 - 40060184
Alignment:
Q  8 cttgcaggaaaagaaaacaagtgtctatgttaagccgaattgctaattgttgaaagcatgactgaacacattttttgactcatttggattgacttatttg 107  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  40059300 cttgcagaaaaagaaaacaagtgtctatgttaagccgaattgctaattgttgaaagcatgactgaacacatttttagactcgtttggattgacttatttg 40059399  T
Q  108 agtttatctactgacataatctctccaagatat-taatgaaacataataattatatgaaaacaatatgactttgttttatcttttgtaaatagaaatatc 206  Q
    ||||||||||||||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40059400 agtttatctactgacataatctctccaagatagataatgaaa-ataataattatatgaaaacaatatgactttgttttatcttttgtaaatagaaatatc 40059498  T
Q  207 atatacataagaacttatatgctgtaagtgcttaataaagtagtttatccaaacatggtgttgatctactgtaaggttagaaagactattataattcact 306  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40059499 atatacgtaagaacttatatgttgtaagtgcttaataaagtagtttatccaaacatggtgttgatctactgtaaggttagaaagactattataattcact 40059598  T
Q  307 gaaatgaaatggatttttgcagtatgattttgatgagaggaaggatttagtgaaatttgtgaaggcagtggctgaggcgggactatatgtgcatctccgc 406  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40059599 gaaatgaaatggatttttgcagtatgattttgatgggaggaaggatttagtgaaatttgtgaaggcagtggctgaggcgggactatatgtgcatctccgc 40059698  T
Q  407 atcggtccatatgtttgtgctgaatggaactatgggtaaagtttggttggtaatttatgtgtgatatttttctggggtgttcatctaatcgagggcttta 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40059699 atcggtccatatgtttgtgctgaatggaactatgggtaaagtttggttggtaatttatgtgtgatatttttctggggtgttcatctaatcgagggcttta 40059798  T
Q  507 acttcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactgataatgaaccatttaaggtagaggtaaccataactctg 606  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40059799 acttcttaacagtggtttccctctttggcttcacttcattccggggattaagttccgaactgataatgaaccatttaaggtagaggtaaccataactctg 40059898  T
Q  607 ttgcttcctacttttgtccttaaatctgagttcacttgccaagaaattttgtcttcaggccgaaatgaagagattcaccgctaagattgtcgatctcatg 706  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40059899 ttgcttcctacttttgtccttaaatctgagttcacttgccaagaaattttgtcttcaggccgaaatgaagagattcaccgctaagattgtcgatctcatg 40059998  T
Q  707 aagcaagagaaactttatgcatcacaaggaggacctataattttatctcaggnnnnnnnatcactaaatacaagtattgcgagtatatttttgtaga--- 803  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||| ||| |||||||||||||||||||       
T  40059999 aagcaagagaaactttatgcatcacaaggaggacctataattttatctcaggtttttttatcactaaatacaattatagcgagtatatttttgtagacat 40060098  T
Q  804 --------taaagtttatatttg-taatgtgagagtatttgtgctttctattgccagattg-aaatgagtatggagacattgattcag 881  Q
             |||||| ||||||| ||||||||||||||||||||  ||||||||||||||| |||||||||||||||||| |||||||    
T  40060099 attaaggtcaaagttaatatttgttaatgtgagagtatttgtgc--tctattgccagattgaaaatgagtatggagacatcgattcag 40060184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 8 - 758
Target Start/End: Original strand, 40085212 - 40085933
Alignment:
Q  8 cttgcaggaaaagaaaacaagtgtctatgttaagccgaattgctaattgttgaaagcatgactgaacacattttttgactcatttggattgacttatttg 107  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||            |||||||||||||||    
T  40085212 cttgcaggaaaagaaaacaagtgtctatgttaagctgaattgctaattgttgaaagcatgactgaacaagttt------------ggattgacttatttg 40085299  T
Q  108 agtttatctactgacataatctctccaagatat-taatgaaacataataattatatgaaaacaatatgactttgttttatcttttgtaaatagaaatatc 206  Q
    ||||||||||||||||||||||||||||||||  |||||||||||| ||| |||||||||||||||||||| |     |||||||||||||||||         
T  40085300 agtttatctactgacataatctctccaagatagataatgaaacatattaactatatgaaaacaatatgactctaaa--atcttttgtaaatagaa----- 40085392  T
Q  207 atatacataagaacttatatgctgtaagtgcttaataaagtagtttatccaaacatggtgttgatctactgtaaggttagaaagactattataattcact 306  Q
           |||| ||||||||| | ||||  |||||| ||||| |||||||||| ||| | |||||||||| |||| | |||||| ||||  ||||||| |    
T  40085393 -------taagcacttatatgttataagcacttaattaagtattttatccaaatatgatcttgatctactataagctaagaaagtctatcttaattcatt 40085485  T
Q  307 gaaatgaaatggatttttgcagtatgattttgatgagaggaaggatttagtgaaatttgtgaaggcagtggctgaggcgggactatatgtgcatctccgc 406  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||| |||||||| || |||||||||||||||||     
T  40085486 gaaatgaaatggatttttgcagtatgattttgatgggaggaaggatttggtgaaatttgtgaaagcagtagctgaggcaggtctatatgtgcatctccgg 40085585  T
Q  407 atcggtccatatgtttgtgctgaatggaactatgggtaaagtttggttggtaatttatgtgtgatatttttctggggtgttca--tctaatcgagggctt 504  Q
    || ||||||||||||||| |||||||||||||||||||||||    ||||||||||||||||  ||| ||||  |||||||||  |||||| ||||||||    
T  40085586 attggtccatatgtttgttctgaatggaactatgggtaaagt----ttggtaatttatgtgtattatatttcgagggtgttcatgtctaattgagggctt 40085681  T
Q  505 taacttcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactgataatgaaccatttaaggtagaggtaaccataactc 604  Q
    ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| || ||||| | | ||    
T  40085682 taacttcttgacagtggtttccctctttggcttcacttcattccagggattaagttccgaactgacaatgaaccatttaaggta-agttaaccttcagtc 40085780  T
Q  605 tgttgcttcctacttttgtccttaaatctgagttcacttgccaagaaattttgtcttcaggccgaaatgaagagattcaccgctaagattgtcgatctca 704  Q
       |||||| | |||||||||||  | ||||||||||||| || |||| ||||||||||||  ||||||||| |||||||| ||||||||||||| ||||    
T  40085781 cagtgcttcatgcttttgtccttgga-ctgagttcacttgacaggaaactttgtcttcaggttgaaatgaagcgattcaccactaagattgtcgacctca 40085879  T
Q  705 tgaagcaagagaaactttatgcatcacaaggaggacctataattttatctcagg 758  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  40085880 tgaagcaagagaaactgtatgcatcacaaggaggacctataattttatctcagg 40085933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 278 - 758
Target Start/End: Original strand, 40077652 - 40078129
Alignment:
Q  278 taaggttagaaagactattataattcactgaaatgaaatggatttttgcagtatgattttgatgagaggaaggatttagtgaaatttgtgaaggcagtgg 377  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  40077652 taaggttagaaagactattataattcattgaaatgaaatggatttttgcagtatgattttgatgggaggaaggatttagtgaaatttgtaaaggcagtgg 40077751  T
Q  378 ctgaggcgggactatatgtgcatctccgcatcggtccatatgtttgtgctgaatggaactatgggtaaagtttggttggtaatttatgtgtgatattttt 477  Q
    ||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||      ||| |||||  |||||||    
T  40077752 ctgaggcaggactatatgtgcatctccggatcggtccatatgtgtgtgctgaatggaactacgggtaaagtttggtcc----tttctgtgtattattttt 40077847  T
Q  478 ctggggtgttcat--ctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactgataatga 575  Q
    ||| |||||||||  ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  40077848 ctgtggtgttcatgtctaattgagggctttaacttcttgacagtggtttccctctttggcttcacttcattccagggattaagttccgaactgacaatga 40077947  T
Q  576 accatttaaggtagaggtaaccataactctgttgcttcctacttttgtccttaaatctgagttcacttgccaagaaattttgtcttcaggccgaaatgaa 675  Q
    |||||||||||||| | ||||| | || |||||||||| | | |||||||||||||||||||||||||| || |||| ||||||||||||||||||||||    
T  40077948 accatttaaggtag-gctaaccttcaccctgttgcttcatgcatttgtccttaaatctgagttcacttgacaggaaactttgtcttcaggccgaaatgaa 40078046  T
Q  676 gagattcaccgctaagattgtcgatctcatgaagcaagagaaactttatgcatcacaaggaggacctataattttatctcagg 758  Q
    | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  40078047 gcgattcaccgctaagattgtcgatctcatgaagcaagagaaactgtatgcatcacaaggaggacctataattttatctcagg 40078129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 147 - 255
Target Start/End: Original strand, 35056063 - 35056171
Alignment:
Q  147 aacataataattatatgaaaacaatatgactttgttttatcttttgtaaatagaaatatcatatacataagaacttatatgctgtaagtgcttaataaag 246  Q
    |||||| ||||||||||||| || ||||  |||||||||||||||||||||||||| | | |||| ||||| ||||||||||| ||||   ||||| |||    
T  35056063 aacatattaattatatgaaaccagtatggttttgttttatcttttgtaaatagaaacaacgtatatataagcacttatatgctataagcaattaattaag 35056162  T
Q  247 tagtttatc 255  Q
    | |||||||    
T  35056163 ttgtttatc 35056171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 819 - 877
Target Start/End: Original strand, 40078213 - 40078272
Alignment:
Q  819 taatgtgagagtatttgtgctttctattgccagattg-aaatgagtatggagacattgat 877  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||    
T  40078213 taatgtgagagtatttgtgctttctaatgccagattgaaaatgagtatggaaacattgat 40078272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 805 - 881
Target Start/End: Original strand, 40085994 - 40086072
Alignment:
Q  805 aaagtttatatttgt-aatgtgagagtatttgtgctttctattgccagattgaaa-tgagtatggagacattgattcag 881  Q
    ||||||||||||||| ||||||||||| |||||| |||||| || ||||| |||| ||||||||||||||| |||||||    
T  40085994 aaagtttatatttgttaatgtgagagtgtttgtgatttctaatgacagatagaaaatgagtatggagacatcgattcag 40086072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 226
Target Start/End: Original strand, 11344360 - 11344425
Alignment:
Q  160 tatgaaaacaatatgactttgttttatcttttgtaaatagaaatatcatatacataagaacttatat 226  Q
    |||||||||||| ||||||| |||||||||||||  ||||||||||| ||| |||||| ||||||||    
T  11344360 tatgaaaacaatttgactttcttttatcttttgt-tatagaaatatcttatgcataagcacttatat 11344425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 126
Target Start/End: Complemental strand, 1830188 - 1830152
Alignment:
Q  90 tttggattgacttatttgagtttatctactgacataa 126  Q
    ||||||||||||||||||||||||| |||||||||||    
T  1830188 tttggattgacttatttgagtttatttactgacataa 1830152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 126
Target Start/End: Complemental strand, 42419942 - 42419906
Alignment:
Q  90 tttggattgacttatttgagtttatctactgacataa 126  Q
    ||||||||||||||||||||||||||| |||||||||    
T  42419942 tttggattgacttatttgagtttatcttctgacataa 42419906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 124
Target Start/End: Original strand, 7103394 - 7103428
Alignment:
Q  90 tttggattgacttatttgagtttatctactgacat 124  Q
    |||||||||||||||||||||||||||| ||||||    
T  7103394 tttggattgacttatttgagtttatctattgacat 7103428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 126
Target Start/End: Original strand, 21616579 - 21616617
Alignment:
Q  88 catttggattgacttatttgagtttatctactgacataa 126  Q
    ||||||||||||||||||| |||||||| ||||||||||    
T  21616579 catttggattgacttatttcagtttatccactgacataa 21616617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 124
Target Start/End: Original strand, 23974414 - 23974448
Alignment:
Q  90 tttggattgacttatttgagtttatctactgacat 124  Q
    |||||||||||||||||| ||||||||||||||||    
T  23974414 tttggattgacttatttgggtttatctactgacat 23974448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 124
Target Start/End: Original strand, 33197182 - 33197216
Alignment:
Q  90 tttggattgacttatttgagtttatctactgacat 124  Q
    |||||||||||||||||||||||||| ||||||||    
T  33197182 tttggattgacttatttgagtttatcaactgacat 33197216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 123
Target Start/End: Original strand, 10619141 - 10619174
Alignment:
Q  90 tttggattgacttatttgagtttatctactgaca 123  Q
    |||||||||||| |||||||||||||||||||||    
T  10619141 tttggattgactcatttgagtttatctactgaca 10619174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 119
Target Start/End: Original strand, 37419588 - 37419617
Alignment:
Q  90 tttggattgacttatttgagtttatctact 119  Q
    ||||||||||||||||||||||||||||||    
T  37419588 tttggattgacttatttgagtttatctact 37419617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 274
Target Start/End: Original strand, 40077535 - 40077628
Alignment:
Q  182 tttatcttttgtaaatagaaatatcatatacataagaacttatatgctgtaagtgcttaa-taaagtagtttatccaaacatggtgttgatcta 274  Q
    ||||| |||||| |||| ||||| | |||| | ||| ||||||||| | ||||||||||| | |||| ||||||| ||||||||| ||||||||    
T  40077535 tttatgttttgtcaataaaaatagcttatatagaagcacttatatggtataagtgcttaatttaagttgtttatctaaacatggtcttgatcta 40077628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 126
Target Start/End: Complemental strand, 43985359 - 43985322
Alignment:
Q  89 atttggattgacttatttgagtttatctactgacataa 126  Q
    |||||||| ||||||||| |||||||||||||||||||    
T  43985359 atttggatcgacttatttaagtttatctactgacataa 43985322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 2e-27; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 490 - 597
Target Start/End: Complemental strand, 35052758 - 35052652
Alignment:
Q  490 tctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactgataatgaaccatttaaggtag 589  Q
    |||||| |||||||||||||||||||||||||||  ||||||||| ||||||||||||| ||||||| ||||| ||| || ||||||||||||||||||     
T  35052758 tctaattgagggctttaacttcttaacagtggttaacctctttggattcacttcattccagggattaggttccaaacagacaatgaaccatttaaggta- 35052660  T
Q  590 aggtaacc 597  Q
    ||||||||    
T  35052659 aggtaacc 35052652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 35052864 - 35052814
Alignment:
Q  15 gaaaagaaaacaagtgtctatgttaagccgaattgctaattgttgaaagca 65  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  35052864 gaaaagaaaacaagtgtgtatgttaagctgaattgctaattgttgaaagca 35052814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 126
Target Start/End: Complemental strand, 30812287 - 30812251
Alignment:
Q  90 tttggattgacttatttgagtttatctactgacataa 126  Q
    |||||||||||||||||||||||| ||||||||||||    
T  30812287 tttggattgacttatttgagtttacctactgacataa 30812251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 126
Target Start/End: Complemental strand, 44822107 - 44822071
Alignment:
Q  90 tttggattgacttatttgagtttatctactgacataa 126  Q
    ||||||||||||||||||||||||||| |||||||||    
T  44822107 tttggattgacttatttgagtttatctgctgacataa 44822071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 7244696 - 7244630
Alignment:
Q  160 tatgaaaacaatatgactttgttttatcttttgtaaatagaaatatcatatacataagaacttatatg 227  Q
    |||||||||| | ||||||| |||||||||||| | ||||||||| | |||||||||| |||||||||    
T  7244696 tatgaaaacagtttgactttcttttatcttttg-atatagaaatagcttatacataagcacttatatg 7244630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 195
Target Start/End: Complemental strand, 23918954 - 23918916
Alignment:
Q  157 ttatatgaaaacaatatgactttgttttatcttttgtaa 195  Q
    ||||||||||||||| ||||||| |||||||||||||||    
T  23918954 ttatatgaaaacaatttgactttattttatcttttgtaa 23918916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 227
Target Start/End: Original strand, 27121659 - 27121728
Alignment:
Q  157 ttatatgaaaacaatatgactttgttttatcttttgtaaatagaaatatcatatacataagaacttatatg 227  Q
    ||||||||||||||| ||||||| ||||||| ||| |  ||||||||||| |||||||||| | |||||||    
T  27121659 ttatatgaaaacaatttgactttattttatcatttat-tatagaaatatcttatacataaggaattatatg 27121728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 214
Target Start/End: Complemental strand, 28178963 - 28178910
Alignment:
Q  160 tatgaaaacaatatgactttgttttatcttttgtaaatagaaatatcatatacat 214  Q
    |||||||||||||||||||| |||||||||||||  ||||||||| | |||||||    
T  28178963 tatgaaaacaatatgactttattttatcttttgt-tatagaaatagcttatacat 28178910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 118
Target Start/End: Complemental strand, 7612580 - 7612551
Alignment:
Q  89 atttggattgacttatttgagtttatctac 118  Q
    ||||||||||||||||||||||||||||||    
T  7612580 atttggattgacttatttgagtttatctac 7612551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 126
Target Start/End: Complemental strand, 9210971 - 9210934
Alignment:
Q  89 atttggattgacttatttgagtttatctactgacataa 126  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  9210971 atttggattgacttatttgagcttatctactgatataa 9210934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 39551469 - 39551506
Alignment:
Q  90 tttggattgacttatttgagtttatctactgacataat 127  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  39551469 tttggattgacttatttgagtttttctacttacataat 39551506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 44917447 - 44917484
Alignment:
Q  90 tttggattgacttatttgagtttatctactgacataat 127  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  44917447 tttggattgacttatttgagtttatctcccgacataat 44917484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 1e-25; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 471 - 588
Target Start/End: Complemental strand, 12735579 - 12735460
Alignment:
Q  471 tatttttctggggtgttcat--ctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactg 568  Q
    |||||| ||||||| |||||  ||||| ||||||||||||||||||| |||||||  ||||||||| ||||||||||||| ||||||||||||| ||  |    
T  12735579 tattttcctggggtcttcatttctaattgagggctttaacttcttaagagtggttaacctctttggattcacttcattccagggattaagttccaaatag 12735480  T
Q  569 ataatgaaccatttaaggta 588  Q
    | ||||||||||||||||||    
T  12735479 acaatgaaccatttaaggta 12735460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 471 - 588
Target Start/End: Complemental strand, 12798406 - 12798287
Alignment:
Q  471 tatttttctggggtgttcat--ctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactg 568  Q
    |||||| ||||||| |||||  ||||| ||||||||||||||||||| |||||||  ||||||||| ||||||||||||| ||||||||||||| ||  |    
T  12798406 tattttcctggggtcttcatttctaattgagggctttaacttcttaagagtggttaacctctttggattcacttcattccagggattaagttccaaatag 12798307  T
Q  569 ataatgaaccatttaaggta 588  Q
    | ||||||||||||||||||    
T  12798306 acaatgaaccatttaaggta 12798287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 126
Target Start/End: Complemental strand, 9107239 - 9107203
Alignment:
Q  90 tttggattgacttatttgagtttatctactgacataa 126  Q
    |||||||||||||||||||||||||||| ||||||||    
T  9107239 tttggattgacttatttgagtttatctagtgacataa 9107203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 126
Target Start/End: Complemental strand, 32010094 - 32010058
Alignment:
Q  90 tttggattgacttatttgagtttatctactgacataa 126  Q
    |||||||||||||||||||||||||||||| ||||||    
T  32010094 tttggattgacttatttgagtttatctactcacataa 32010058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 126
Target Start/End: Complemental strand, 32197882 - 32197846
Alignment:
Q  90 tttggattgacttatttgagtttatctactgacataa 126  Q
    ||||||||||||| |||||||||||||||||||||||    
T  32197882 tttggattgacttttttgagtttatctactgacataa 32197846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 125
Target Start/End: Complemental strand, 40111413 - 40111382
Alignment:
Q  94 gattgacttatttgagtttatctactgacata 125  Q
    ||||||||||||||||||||||||||||||||    
T  40111413 gattgacttatttgagtttatctactgacata 40111382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 12735664 - 12735614
Alignment:
Q  15 gaaaagaaaacaagtgtctatgttaagccgaattgctaattgttgaaagca 65  Q
    |||||||||||||| || ||| |||||| ||||| ||||||||||||||||    
T  12735664 gaaaagaaaacaagcgtgtatattaagctgaatttctaattgttgaaagca 12735614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 12798491 - 12798441
Alignment:
Q  15 gaaaagaaaacaagtgtctatgttaagccgaattgctaattgttgaaagca 65  Q
    |||||||||||||| || ||| |||||| ||||| ||||||||||||||||    
T  12798491 gaaaagaaaacaagcgtgtatattaagctgaatttctaattgttgaaagca 12798441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 128
Target Start/End: Complemental strand, 17369352 - 17369314
Alignment:
Q  90 tttggattgacttatttgagtttatctactgacataatc 128  Q
    |||||||||||||||||||  ||||||||||||||||||    
T  17369352 tttggattgacttatttgaacttatctactgacataatc 17369314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 227
Target Start/End: Original strand, 35135735 - 35135804
Alignment:
Q  157 ttatatgaaaacaatatgactttgttttatcttttgtaaatagaaatatcatatacataagaacttatatg 227  Q
    ||||||||||| | | ||||||| |||||||||||||  ||||||||||| |||||||||  |||||||||    
T  35135735 ttatatgaaaatagtttgactttattttatcttttgt-tatagaaatatcttatacataaacacttatatg 35135804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 126
Target Start/End: Original strand, 14706204 - 14706241
Alignment:
Q  89 atttggattgacttatttgagtttatctactgacataa 126  Q
    ||||||||||||||||||||| ||| ||||||||||||    
T  14706204 atttggattgacttatttgagcttacctactgacataa 14706241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 119
Target Start/End: Original strand, 40335794 - 40335823
Alignment:
Q  90 tttggattgacttatttgagtttatctact 119  Q
    ||||||||||||||||||||||||||||||    
T  40335794 tttggattgacttatttgagtttatctact 40335823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 4e-25; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 683 - 758
Target Start/End: Complemental strand, 22015654 - 22015579
Alignment:
Q  683 accgctaagattgtcgatctcatgaagcaagagaaactttatgcatcacaaggaggacctataattttatctcagg 758  Q
    |||||||||||||||||| | |||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  22015654 accgctaagattgtcgatatgatgaagcaagagaacctctatgcatcacaaggaggacctataattttatctcagg 22015579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 361 - 446
Target Start/End: Complemental strand, 22015910 - 22015825
Alignment:
Q  361 atttgtgaaggcagtggctgaggcgggactatatgtgcatctccgcatcggtccatatgtttgtgctgaatggaactatgggtaaa 446  Q
    ||||||||||||||| || |  || ||  |||||||||||||||| |||||||||||||| |||||||||||||| || |||||||    
T  22015910 atttgtgaaggcagtagcagcagcaggtttatatgtgcatctccggatcggtccatatgtgtgtgctgaatggaattacgggtaaa 22015825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 514 - 591
Target Start/End: Complemental strand, 22015744 - 22015667
Alignment:
Q  514 aacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactgataatgaaccatttaaggtagag 591  Q
    |||||||||||||| |||||| | || || ||| | || ||||||||||||||| ||||||||||||| |||| ||||    
T  22015744 aacagtggtttccccctttggttgcattttattgctggaattaagttccgaactaataatgaaccattcaaggcagag 22015667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 126
Target Start/End: Original strand, 22662172 - 22662208
Alignment:
Q  90 tttggattgacttatttgagtttatctactgacataa 126  Q
    |||||||||||||||||||||||||||||| ||||||    
T  22662172 tttggattgacttatttgagtttatctactaacataa 22662208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 126
Target Start/End: Original strand, 22666651 - 22666687
Alignment:
Q  90 tttggattgacttatttgagtttatctactgacataa 126  Q
    |||||||||||||||||||||||||||||| ||||||    
T  22666651 tttggattgacttatttgagtttatctactaacataa 22666687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 126
Target Start/End: Complemental strand, 25571408 - 25571372
Alignment:
Q  90 tttggattgacttatttgagtttatctactgacataa 126  Q
    ||||||||| |||||||||||||||||||||||||||    
T  25571408 tttggattggcttatttgagtttatctactgacataa 25571372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 126
Target Start/End: Original strand, 27043751 - 27043787
Alignment:
Q  90 tttggattgacttatttgagtttatctactgacataa 126  Q
    |||||||||||||||||||| ||||||||||||||||    
T  27043751 tttggattgacttatttgagcttatctactgacataa 27043787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 126
Target Start/End: Complemental strand, 41336909 - 41336873
Alignment:
Q  90 tttggattgacttatttgagtttatctactgacataa 126  Q
    |||||||||||||||||||||||||||||| ||||||    
T  41336909 tttggattgacttatttgagtttatctactcacataa 41336873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 122
Target Start/End: Original strand, 52315118 - 52315150
Alignment:
Q  90 tttggattgacttatttgagtttatctactgac 122  Q
    |||||||||||||||||||||||||||||||||    
T  52315118 tttggattgacttatttgagtttatctactgac 52315150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 121
Target Start/End: Complemental strand, 52428813 - 52428782
Alignment:
Q  90 tttggattgacttatttgagtttatctactga 121  Q
    ||||||||||||||||||||||||||||||||    
T  52428813 tttggattgacttatttgagtttatctactga 52428782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 227
Target Start/End: Complemental strand, 30024697 - 30024628
Alignment:
Q  157 ttatatgaaaacaatatgactttgttttatcttttgtaaatagaaatatcatatacataagaacttatatg 227  Q
    ||||||||||||||| | ||||| |||||||||||||  ||||||||| | ||| |||||| |||||||||    
T  30024697 ttatatgaaaacaattttactttattttatcttttgt-tatagaaataacttatgcataagtacttatatg 30024628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 227
Target Start/End: Original strand, 54325110 - 54325179
Alignment:
Q  157 ttatatgaaaacaatatgactttgttttatcttttgtaaatagaaatatcatatacataagaacttatatg 227  Q
    ||||||||||||| | ||||||| ||||||||||||| ||||||||||   |||||| ||| |||||||||    
T  54325110 ttatatgaaaacagtttgactttattttatcttttgt-aatagaaatagtttatacacaagcacttatatg 54325179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 119
Target Start/End: Complemental strand, 3891740 - 3891711
Alignment:
Q  90 tttggattgacttatttgagtttatctact 119  Q
    ||||||||||||||||||||||||||||||    
T  3891740 tttggattgacttatttgagtttatctact 3891711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 126
Target Start/End: Original strand, 9720578 - 9720611
Alignment:
Q  93 ggattgacttatttgagtttatctactgacataa 126  Q
    ||||||||||||||||||||||||||| ||||||    
T  9720578 ggattgacttatttgagtttatctactaacataa 9720611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 126
Target Start/End: Complemental strand, 19305076 - 19305039
Alignment:
Q  89 atttggattgacttatttgagtttatctactgacataa 126  Q
    ||||||||||||||||||||| ||||||| ||||||||    
T  19305076 atttggattgacttatttgagattatctattgacataa 19305039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 264
Target Start/End: Complemental strand, 20907152 - 20907064
Alignment:
Q  175 actttgttttatcttttgtaaatagaaatatcatatacataagaacttatatgctgtaagtgcttaataaagtagtttatccaaacatgg 264  Q
    ||||| ||||||||||| | | || ||||| | |||||||||  ||||||| ||| ||| |||||||| ||| |||||||||||||||||    
T  20907152 actttattttatcttttctta-tacaaatagcttatacataaacacttatacgctataaatgcttaattaagcagtttatccaaacatgg 20907064  T

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Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 126
Target Start/End: Original strand, 37636106 - 37636143
Alignment:
Q  89 atttggattgacttatttgagtttatctactgacataa 126  Q
    ||||||||||| ||||||||||||||||||| ||||||    
T  37636106 atttggattgatttatttgagtttatctactaacataa 37636143  T

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Target: chr3 (Bit Score: 58; Significance: 6e-24; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 471 - 597
Target Start/End: Original strand, 53322735 - 53322862
Alignment:
Q  471 tatttttctggggtgttcat--ctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactg 568  Q
    |||||||||||||| |||||  ||||| ||||||||||||||||||| | |||||  ||||||||  ||||||||||||| ||||||||||||| ||  |    
T  53322735 tatttttctggggtcttcatttctaattgagggctttaacttcttaagattggttaacctctttgtattcacttcattccagggattaagttccaaatcg 53322834  T
Q  569 ataatgaaccatttaaggtagaggtaacc 597  Q
    | |||||||||||||||||| ||||||||    
T  53322835 acaatgaaccatttaaggta-aggtaacc 53322862  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 126
Target Start/End: Complemental strand, 26911742 - 26911704
Alignment:
Q  88 catttggattgacttatttgagtttatctactgacataa 126  Q
    |||||||||||||||||||||||||||||||||||||||    
T  26911742 catttggattgacttatttgagtttatctactgacataa 26911704  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 126
Target Start/End: Original strand, 25447166 - 25447202
Alignment:
Q  90 tttggattgacttatttgagtttatctactgacataa 126  Q
    |||||||||||||||||||||||||||||||||||||    
T  25447166 tttggattgacttatttgagtttatctactgacataa 25447202  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 91 - 126
Target Start/End: Original strand, 33405114 - 33405149
Alignment:
Q  91 ttggattgacttatttgagtttatctactgacataa 126  Q
    ||||||||||||||||||||||||||||||||||||    
T  33405114 ttggattgacttatttgagtttatctactgacataa 33405149  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 125
Target Start/End: Original strand, 26990146 - 26990181
Alignment:
Q  90 tttggattgacttatttgagtttatctactgacata 125  Q
    |||||||||||||||||||| |||||||||||||||    
T  26990146 tttggattgacttatttgagcttatctactgacata 26990181  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 227
Target Start/End: Original strand, 44374720 - 44374786
Alignment:
Q  160 tatgaaaacaatatgactttgttttatcttttgtaaatagaaatatcatatacataagaacttatatg 227  Q
    |||||||||||| ||||||| ||||||||||||| || ||| ||| | |||||||||| |||||||||    
T  44374720 tatgaaaacaatttgactttattttatcttttgttaa-agatatagcttatacataagcacttatatg 44374786  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 124
Target Start/End: Original strand, 31615481 - 31615515
Alignment:
Q  90 tttggattgacttatttgagtttatctactgacat 124  Q
    ||||||||||||||||||||||||||||| |||||    
T  31615481 tttggattgacttatttgagtttatctacggacat 31615515  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 223
Target Start/End: Complemental strand, 35708316 - 35708251
Alignment:
Q  157 ttatatgaaaacaatatgactttgttttatcttttgtaaatagaaatatcatatacataagaactta 223  Q
    ||||||||||||| ||||||||||||| |||||| ||  ||||||||| ||||| |||||| |||||    
T  35708316 ttatatgaaaacagtatgactttgtttcatctttagt-tatagaaatagcatatgcataagcactta 35708251  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 53322651 - 53322700
Alignment:
Q  15 gaaaagaaaacaagtgtctatgttaagccgaattgctaattgttgaaagca 65  Q
    ||||||||||||||||| ||| |||| | ||||||||||||||||||||||    
T  53322651 gaaaagaaaacaagtgtgtat-ttaatctgaattgctaattgttgaaagca 53322700  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 261
Target Start/End: Original strand, 4534428 - 4534530
Alignment:
Q  157 ttatatgaaaacaatatgactttgttttatcttttgtaaatagaaatatcatatacataagaacttatatgctgtaagtgcttaataaagtagtttatcc 256  Q
    |||||| ||||||||  |||||| || |||||||| |  ||| ||||| | ||||| |||| |||||||  || |||||||||||| |||| ||||||||    
T  4534428 ttatattaaaacaattcgactttattatatcttttatttatataaataacttatacgtaagcacttata--ctataagtgcttaattaagttgtttatcc 4534525  T
Q  257 aaaca 261  Q
    |||||    
T  4534526 aaaca 4534530  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 119
Target Start/End: Complemental strand, 32582886 - 32582857
Alignment:
Q  90 tttggattgacttatttgagtttatctact 119  Q
    ||||||||||||||||||||||||||||||    
T  32582886 tttggattgacttatttgagtttatctact 32582857  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 126
Target Start/End: Original strand, 41848636 - 41848673
Alignment:
Q  89 atttggattgacttatttgagtttatctactgacataa 126  Q
    |||| |||||||||||||||||||||||||| ||||||    
T  41848636 atttagattgacttatttgagtttatctactaacataa 41848673  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 127
Target Start/End: Original strand, 17009502 - 17009540
Alignment:
Q  89 atttggattgacttatttgagtttatctactgacataat 127  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  17009502 atttgaattgacttatttgagtttatctactgacataat 17009540  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 126
Target Start/End: Complemental strand, 30257834 - 30257797
Alignment:
Q  89 atttggattgacttatttgagtttatctactgacataa 126  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  30257834 atttggatttacttatttgagtttatctactgacataa 30257797  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 126
Target Start/End: Complemental strand, 6292641 - 6292605
Alignment:
Q  90 tttggattgacttatttgagtttatctactgacataa 126  Q
    |||||||||||||||||||| ||||||||||||||||    
T  6292641 tttggattgacttatttgagcttatctactgacataa 6292605  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 126
Target Start/End: Complemental strand, 2522744 - 2522709
Alignment:
Q  91 ttggattgacttatttgagtttatctactgacataa 126  Q
    |||||||||||||||||||||||||||||| |||||    
T  2522744 ttggattgacttatttgagtttatctactggcataa 2522709  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 119
Target Start/End: Original strand, 172494 - 172523
Alignment:
Q  90 tttggattgacttatttgagtttatctact 119  Q
    ||||||||||||||||||||||||||||||    
T  172494 tttggattgacttatttgagtttatctact 172523  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 119
Target Start/End: Original strand, 29045854 - 29045883
Alignment:
Q  90 tttggattgacttatttgagtttatctact 119  Q
    ||||||||||||||||||||||||||||||    
T  29045854 tttggattgacttatttgagtttatctact 29045883  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 126
Target Start/End: Original strand, 29793618 - 29793655
Alignment:
Q  89 atttggattgacttatttgagtttatctactgacataa 126  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  29793618 atttgtattgacttatttgagcttatctactgacataa 29793655  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 119
Target Start/End: Original strand, 30014000 - 30014029
Alignment:
Q  90 tttggattgacttatttgagtttatctact 119  Q
    ||||||||||||||||||||||||||||||    
T  30014000 tttggattgacttatttgagtttatctact 30014029  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 126
Target Start/End: Complemental strand, 38602476 - 38602440
Alignment:
Q  90 tttggattgacttatttgagtttatctactgacataa 126  Q
    |||||||||||||||||||| ||||||||||||||||    
T  38602476 tttggattgacttatttgagcttatctactgacataa 38602440  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 128
Target Start/End: Complemental strand, 2606198 - 2606160
Alignment:
Q  90 tttggattgacttatttgagtttatctactgacataatc 128  Q
    |||||||||||||||| ||| ||||||||||||||||||    
T  2606198 tttggattgacttattcgagcttatctactgacataatc 2606160  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 128
Target Start/End: Original strand, 6496812 - 6496850
Alignment:
Q  90 tttggattgacttatttgagtttatctactgacataatc 128  Q
    ||||||||||||| |||||||||||||||| ||||||||    
T  6496812 tttggattgacttgtttgagtttatctactaacataatc 6496850  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 126
Target Start/End: Complemental strand, 6950468 - 6950435
Alignment:
Q  93 ggattgacttatttgagtttatctactgacataa 126  Q
    |||||||||||||||||||||||||||| |||||    
T  6950468 ggattgacttatttgagtttatctactggcataa 6950435  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 119
Target Start/End: Complemental strand, 10727493 - 10727464
Alignment:
Q  90 tttggattgacttatttgagtttatctact 119  Q
    ||||||||||||||||||||||||||||||    
T  10727493 tttggattgacttatttgagtttatctact 10727464  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000005; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 126
Target Start/End: Complemental strand, 4308926 - 4308890
Alignment:
Q  90 tttggattgacttatttgagtttatctactgacataa 126  Q
    ||||||||| |||||||||||||||||||||||||||    
T  4308926 tttggattggcttatttgagtttatctactgacataa 4308890  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 126
Target Start/End: Original strand, 30536886 - 30536922
Alignment:
Q  90 tttggattgacttatttgagtttatctactgacataa 126  Q
    |||||||||||||||||||||||||||||| ||||||    
T  30536886 tttggattgacttatttgagtttatctacttacataa 30536922  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 126
Target Start/End: Original strand, 7351597 - 7351628
Alignment:
Q  95 attgacttatttgagtttatctactgacataa 126  Q
    ||||||||||||||||||||||||||||||||    
T  7351597 attgacttatttgagtttatctactgacataa 7351628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 193
Target Start/End: Original strand, 2205644 - 2205677
Alignment:
Q  160 tatgaaaacaatatgactttgttttatcttttgt 193  Q
    |||||||||||| |||||||||||||||||||||    
T  2205644 tatgaaaacaatttgactttgttttatcttttgt 2205677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 261
Target Start/End: Complemental strand, 4006711 - 4006610
Alignment:
Q  157 ttatatgaaaacaatatgactttgttttatcttttgtaaatagaaatatcatatacataagaacttatatgctgtaagtgcttaataaagtagtttatcc 256  Q
    |||||| |||||||| ||||||| ||||||| ||||| | |||||||||| ||| |||||| |||  |||||| |||| | ||||| |||| | ||||||    
T  4006711 ttatataaaaacaatttgactttattttatcatttgtta-tagaaatatcttatgcataagcact--tatgctataagggattaattaagttgcttatcc 4006615  T
Q  257 aaaca 261  Q
    |||||    
T  4006614 aaaca 4006610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 226
Target Start/End: Original strand, 24836272 - 24836340
Alignment:
Q  157 ttatatgaaaacaatatgactttgttttatcttttgtaaatagaaatatcatatacataagaacttatat 226  Q
    ||||| ||||||||| ||||||| |||||||||||||  ||||||||| | |||||||||  ||||||||    
T  24836272 ttatacgaaaacaatttgactttattttatcttttgt-tatagaaataacttatacataaatacttatat 24836340  T

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Target: scaffold0024 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 223
Target Start/End: Complemental strand, 27573 - 27508
Alignment:
Q  157 ttatatgaaaacaatatgactttgttttatcttttgtaaatagaaatatcatatacataagaactta 223  Q
    ||||||||||||||| ||||||| ||||||||| |||  ||||||||| | |||||||||| |||||    
T  27573 ttatatgaaaacaatttgactttattttatcttctgt-tatagaaataacttatacataagcactta 27508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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