View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5228-Insertion-8 (Length: 607)
Name: NF5228-Insertion-8
Description: NF5228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5228-Insertion-8 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 314 - 607
Target Start/End: Complemental strand, 43537336 - 43537034
Alignment:
| Q |
314 |
aattagaggggtggcatggaggatggaaaaagtggattatggagaacgaaatcggaacaactagagtcagtgat------------gtccacaccgggat |
401 |
Q |
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| T |
43537336 |
aattagtgaggtggcatggaggatggaaaaagtggattatggagaacgaaatcggaacaactagagtcagtggtagaagatttgacgtccacaccgggat |
43537237 |
T |
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| Q |
402 |
caagtgagtcagtcggagtggcggacggtggtagtgggagtcttacaagaaaatcaaggagggcatcccccggtggaagaaatacacacataaggaaggc |
501 |
Q |
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| T |
43537236 |
caagtgagtcggtcggagtggcggacggtggtagtgggagtcttactagaaaatcaaggagggcatcccccggtggaagaaatacacacataaggaaggc |
43537137 |
T |
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| Q |
502 |
gaggagtgtccagacttctttgaaggttgatttggatcatgaggttaatagtggtgctgctcttagtagagcttcaagtttgggactctcattttccttt |
601 |
Q |
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| T |
43537136 |
gaggagtgtccagacttctttgaaggttgatttgg---atgaggttaatagtggtgctgctcttagtagagcttcaagtttgggactctcattttccttt |
43537040 |
T |
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| Q |
602 |
actgga |
607 |
Q |
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| T |
43537039 |
actgga |
43537034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 7 - 218
Target Start/End: Complemental strand, 43537640 - 43537429
Alignment:
| Q |
7 |
actagaagggtattttggtagttgtatccataaagctctaatctcttaactggcctttatatagagttttgctccacatgattgttatatatccattcca |
106 |
Q |
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| T |
43537640 |
actagaagggtattttggtagttgtatccataaagctctaacctcttaactggcctttatatagagttttgctccacatgattgttatagatccattcca |
43537541 |
T |
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| Q |
107 |
ttttcatataatcccgcgattttcttctcaagcaatcctgtctcctgtttctgctttggtcctcattttcctttctgaggnnnnnnnctataaggtaaat |
206 |
Q |
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| T |
43537540 |
ttttcatataatcccgcgattttcttctcaagcaatactgtctcctgtttctgctttggtcctcattttcctttctgaggaaaaaaactataaggtaaat |
43537441 |
T |
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| Q |
207 |
ccaatcattttc |
218 |
Q |
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| T |
43537440 |
ccaatcattttc |
43537429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 276
Target Start/End: Complemental strand, 43537403 - 43537374
Alignment:
| Q |
247 |
atcaagaagtaacataaaatacatgaaata |
276 |
Q |
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| T |
43537403 |
atcaagaagtaacataaaatacatgaaata |
43537374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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