View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5228_high_1 (Length: 477)
Name: NF5228_high_1
Description: NF5228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5228_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 18 - 461
Target Start/End: Complemental strand, 5174000 - 5173556
Alignment:
| Q |
18 |
atatactcacaaaaataaattatgtgcatacactccaaaaacacttgaatgaaatgactcgggtctcttacaacataacataggtcctaggtttcaatcc |
117 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5174000 |
atatactcacaaaattaaattatgtgcatacactccaaaaacacttgaatgaaatgactcgggtctcttacaacataacataggtcctaggtttcaatcc |
5173901 |
T |
|
| Q |
118 |
agctctgagaatgcagcagcgttaaaactcttaatggagagttgtatcaccctcgtgactctatttaactcgagggattagtctatatagttgcacgtga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5173900 |
agctctgagaatgcagcagcgttaaaactcttaatggagagttgtatcaccctcgtgactctatttaactcgagggattagtctatatagttgcacgtga |
5173801 |
T |
|
| Q |
218 |
aggatatccgatttacaacgataaataattatgtgcataggcttttgacatgttgttacttgtcattatcctatagctaaaaatgctgctttcaaattta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5173800 |
aggatatccgatttacaacgataaataattatgtgcataggcttttgacatgttgttacttgtcattatcctatagctaaaaatgctgctttcaaattta |
5173701 |
T |
|
| Q |
318 |
agtttataaatgatctacaattgaagttcaaaaggttcgtcatcc-aaatttagtgacacaattgagacatcaaatctatttttatcattagaaatctaa |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5173700 |
agtttataaatgatctacaattgaagttcaaaaggttcgtcatccaaaatttagtgacacaattgagacatcaaatctatttttatcattagaaatctaa |
5173601 |
T |
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| Q |
417 |
ctcaataacccggaatttgcaaacatggtagcacaagcaactgat |
461 |
Q |
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| T |
5173600 |
ctcaataacccggaatttgcaaacatggtagcacaagcaactgat |
5173556 |
T |
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