View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5228_high_12 (Length: 244)
Name: NF5228_high_12
Description: NF5228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5228_high_12 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 244
Target Start/End: Original strand, 39078942 - 39079167
Alignment:
| Q |
19 |
attcggtcattggaaatactctatgggctctgctggcagtgacgacctatcaaccttgtcagtgggtgttactagtttctatcattcaattgtaatcggc |
118 |
Q |
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| T |
39078942 |
attcggtcattggaaatactctattggctctgctggcagtgacgacctatcaaccttgtcagtgggtgttactagtttctatcattcaattgtaatcggc |
39079041 |
T |
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| Q |
119 |
aaggaaaccgctcattgtatgtatcgagaagaaagtcnnnnnnnggttaagatttgttggccactcgaagatttattatatcaatagttagatttccttc |
218 |
Q |
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||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39079042 |
aaggaaaccactcattgtatgtatcgagaagaaagtctttttttggttaagatttgttggccactcgaagatttattatatcaatagttagatttccttc |
39079141 |
T |
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| Q |
219 |
tatataattttcatgtttcatcctct |
244 |
Q |
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|||||||||||||||||||||||||| |
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| T |
39079142 |
tatataattttcatgtttcatcctct |
39079167 |
T |
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