View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5228_high_14 (Length: 203)
Name: NF5228_high_14
Description: NF5228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5228_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 16 - 184
Target Start/End: Original strand, 1857310 - 1857478
Alignment:
| Q |
16 |
agaagaagtcttgctatgcattttctatcttgcttgaaaaacgataatgtgtttgaagttattcaagatggtatgtggaatgaagaaaacaaacaagaga |
115 |
Q |
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| T |
1857310 |
agaagaagtcttgctatgcattttctatcttgcttgaaaaaggataatgtatttgaagttattcaagatggtttgtggaatgaagaaaacaaacaagaga |
1857409 |
T |
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| Q |
116 |
tcatggaggtggctgttcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaagg |
184 |
Q |
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| T |
1857410 |
tcaaggaggtggctgttcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaagg |
1857478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 12 - 184
Target Start/End: Original strand, 1843295 - 1843467
Alignment:
| Q |
12 |
agagagaagaagtcttgctatgcattttctatcttgcttgaaaaacgataatgtgtttgaagttattcaagatggtatgtggaatgaagaaaacaaacaa |
111 |
Q |
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| T |
1843295 |
agagagaagaagtcttgcaatgaatttactatcttgattgaaaaaagataatgtgtttgaagttattcaagatggtttgtggaatgaagaaaacaaacaa |
1843394 |
T |
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| Q |
112 |
gagatcatggaggtggctgttcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaagg |
184 |
Q |
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| T |
1843395 |
gagatcaaggaggtggctgttcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaagg |
1843467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 16 - 184
Target Start/End: Original strand, 1868908 - 1869076
Alignment:
| Q |
16 |
agaagaagtcttgctatgcattttctatcttgcttgaaaaacgataatgtgtttgaagttattcaagatggtatgtggaatgaagaaaacaaacaagaga |
115 |
Q |
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| T |
1868908 |
agaagaagtcttgcaatgcatttactatcttgattgaaaaaagataatgtatttgaagttattcaagatggtttgtggaatgaagaaaacaaacaagaga |
1869007 |
T |
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| Q |
116 |
tcatggaggtggctgttcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaagg |
184 |
Q |
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| T |
1869008 |
tcaaggaggtggctgttcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaagg |
1869076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 12 - 184
Target Start/End: Complemental strand, 1815738 - 1815566
Alignment:
| Q |
12 |
agagagaagaagtcttgctatgcattttctatcttgcttgaaaaacgataatgtgtttgaagttattcaagatggtatgtggaatgaagaaaacaaacaa |
111 |
Q |
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| T |
1815738 |
agagagaagaagtcttgctacgcactttttatcttgcttgaaaaaggataatgtgtttgaagttattcaagatggtttgtggaatgaagaaaacaaacaa |
1815639 |
T |
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| Q |
112 |
gagatcatggaggtggctgttcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaagg |
184 |
Q |
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| T |
1815638 |
gtgatcatggaggtggctgttcttgcggcgaactgtttgagacttataggggaggaaagaccaagcatgaagg |
1815566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 184
Target Start/End: Complemental strand, 9161550 - 9161388
Alignment:
| Q |
22 |
agtcttgctatgcattttctatcttgcttgaaaaacgataatgtgtttgaagttattcaagatggtatgtggaatgaagaaaacaaacaagagatcatgg |
121 |
Q |
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| T |
9161550 |
agtcttgctatgcactttttgtcttgtttaaaacaagatagaatttttgaagctattcaagttggtattttaaatgatgaaaacaaggaggagattaagg |
9161451 |
T |
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| Q |
122 |
aggtggctgttcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaagg |
184 |
Q |
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| T |
9161450 |
aggttgctattcttgcagcaaggtgtttgagactaagaggggatgaaaggcctagcatgaagg |
9161388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 22 - 184
Target Start/End: Original strand, 9118902 - 9119064
Alignment:
| Q |
22 |
agtcttgctatgcattttctatcttgcttgaaaaacgataatgtgtttgaagttattcaagatggtatgtggaatgaagaaaacaaacaagagatcatgg |
121 |
Q |
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| T |
9118902 |
agtcttgctatgcacttcttgtcttgtttaaaacaagataaactttttgaagctattcaagttggaattttgaatgatgataacaaggaagagattaagg |
9119001 |
T |
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| Q |
122 |
aggtggctgttcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaagg |
184 |
Q |
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| T |
9119002 |
aggttgctattcttgcagcaaggtgtttgagacttcgaggagaggaaagacctagtatgaagg |
9119064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 173
Target Start/End: Complemental strand, 9199943 - 9199792
Alignment:
| Q |
22 |
agtcttgctatgcattttctatcttgcttgaaaaacgataatgtgtttgaagttattcaagatggtatgtggaatgaagaaaacaaacaagagatcatgg |
121 |
Q |
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| T |
9199943 |
agtcttgctatgcactttttgtcttgtttaaaacaagataaactttttgatgctattcaagttggaattttggatgatgaaaacaagaaagagattaagg |
9199844 |
T |
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| Q |
122 |
aggtggctgttcttgcggcgaagtgtttgagacttagaggggaagaaagacc |
173 |
Q |
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| T |
9199843 |
aggttgctattcttgctgcaaggtgtttaagacttagaggtgatgaaagacc |
9199792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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