View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5228_high_6 (Length: 345)
Name: NF5228_high_6
Description: NF5228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5228_high_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 6 - 340
Target Start/End: Complemental strand, 1843140 - 1842806
Alignment:
| Q |
6 |
cagtttgagcaaggggaaccaatctggaagctacaaaatcgtacactttggcagtgttgttgccatctaagagaatgttatcacacttgacatctctatg |
105 |
Q |
| |
|
|||||||| ||| ||||||||||| |||||| ||||||| | |||||||| |||||| | | |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
1843140 |
cagtttgatcaattggaaccaatcttgaagctccaaaatctgatactttggctgtgttggttctatctaagagaatgttatcactcttgacatctctatg |
1843041 |
T |
|
| Q |
106 |
gataataggtattgaggcatatgaatgtagatatgacaaagattcagctacctctgcggctatcttaagacgagttttccatgtttcattattcacctta |
205 |
Q |
| |
|
||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1843040 |
gattattggtattgaggcatatgaatgtagatatgacaaagtttcagctacctctgcggctatcttaagacgagttttccatgtttcattattcacctta |
1842941 |
T |
|
| Q |
206 |
atacgttttgtgtgtataaaaccagaaagggtgccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttga |
305 |
Q |
| |
|
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1842940 |
ttactttgtgtgtgtataaaaccagaaagggtgccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttga |
1842841 |
T |
|
| Q |
306 |
caacattcctatgatttatttgagagagaataatt |
340 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
1842840 |
caacattcctatgatttatttgagagagaataatt |
1842806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 6 - 335
Target Start/End: Complemental strand, 1868749 - 1868420
Alignment:
| Q |
6 |
cagtttgagcaaggggaaccaatctggaagctacaaaatcgtacactttggcagtgttgttgccatctaagagaatgttatcacacttgacatctctatg |
105 |
Q |
| |
|
|||||||| |||| ||||||||||| |||||| ||||||| | |||||||| |||||| | | |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
1868749 |
cagtttgatcaagtggaaccaatcttgaagctccaaaatccgatactttggcggtgttggttctatctaagagaatgttatcactcttgacatctctatg |
1868650 |
T |
|
| Q |
106 |
gataataggtattgaggcatatgaatgtagatatgacaaagattcagctacctctgcggctatcttaagacgagttttccatgtttcattattcacctta |
205 |
Q |
| |
|
||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1868649 |
gatgatgggtattgaggcatatgaatgtagatatgacaaagcttcagctacctctgcggctatcttaagacgagttttccatgtttcattattcacctta |
1868550 |
T |
|
| Q |
206 |
atacgttttgtgtgtataaaaccagaaagggtgccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttga |
305 |
Q |
| |
|
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1868549 |
ttactttgtgtgtgtataaaaccagaaagggtgccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttga |
1868450 |
T |
|
| Q |
306 |
caacattcctatgatttatttgagagagaa |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
1868449 |
caacattcctatgatttatttgagagagaa |
1868420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 6 - 332
Target Start/End: Complemental strand, 1857151 - 1856828
Alignment:
| Q |
6 |
cagtttgagcaaggggaaccaatctggaagctacaaaatcgtacactttggcagtgttgttgccatctaagagaatgttatcacacttgacatctctatg |
105 |
Q |
| |
|
|||||||| |||| ||||||||||| |||||| ||||||| |||||||||| |||||| | |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
1857151 |
cagtttgatcaagtggaaccaatcttgaagctccaaaatccgacactttggcggtgttggttccatctaagagaatgttatcactcttgacatctctatg |
1857052 |
T |
|
| Q |
106 |
gataataggtattgaggcatatgaatgtagatatgacaaagattcagctacctctgcggctatcttaagacgagttttccatgtttcattattcacctta |
205 |
Q |
| |
|
||| || ||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||| ||| || |||| || |
|
|
| T |
1857051 |
gatgatgggtgttgaggcatatgaatgtagatatgacagagcctcagctacctctgcggctatcttaagacgagtcttccaagttggatcattcgtct-- |
1856954 |
T |
|
| Q |
206 |
atacgttttgtgtgtataaaaccagaaagggtgccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttga |
305 |
Q |
| |
|
||| ||||||||| ||||| ||||||| || |||||| ||||||| |||||||||||||||||||||||||| |||| ||||||||| |||||||||| |
|
|
| T |
1856953 |
-taccttttgtgtgaataaattcagaaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttga |
1856855 |
T |
|
| Q |
306 |
caacattcctatgatttatttgagaga |
332 |
Q |
| |
|
| ||||| || |||||||||||||||| |
|
|
| T |
1856854 |
ccacatttctgtgatttatttgagaga |
1856828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 6 - 332
Target Start/End: Original strand, 1815893 - 1816216
Alignment:
| Q |
6 |
cagtttgagcaaggggaaccaatctggaagctacaaaatcgtacactttggcagtgttgttgccatctaagagaatgttatcacacttgacatctctatg |
105 |
Q |
| |
|
|||||||| |||| |||| ||| || || ||| ||||||| ||||||| || |||||| | |||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
1815893 |
cagtttgatcaagtggaatcaaccttgatgctccaaaatctgacactttagcggtgttggttccatctaagagaatgttagcactcttgacatctctatg |
1815992 |
T |
|
| Q |
106 |
gataataggtattgaggcatatgaatgtagatatgacaaagattcagctacctctgcggctatcttaagacgagttttccatgtttcattattcacctta |
205 |
Q |
| |
|
|||||| |||||||||||| |||||| |||||||||| || | |||||||||| | |||||| |||||||||||||||| || || ||| || |
|
|
| T |
1815993 |
gataatgggtattgaggcagctgaatgcagatatgacagagctccagctacctcaacagctatcctaagacgagttttccaagtaagatcgttcgtct-- |
1816090 |
T |
|
| Q |
206 |
atacgttttgtgtgtataaaaccagaaagggtgccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttga |
305 |
Q |
| |
|
||| || |||| | | ||| ||||||| || |||||| ||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
1816091 |
-taccttgtgtgcgaagaaattcagaaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccccaagagtttga |
1816189 |
T |
|
| Q |
306 |
caacattcctatgatttatttgagaga |
332 |
Q |
| |
|
| |||||||| |||||||||||||||| |
|
|
| T |
1816190 |
ccacattcctgtgatttatttgagaga |
1816216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 8 - 327
Target Start/End: Original strand, 9161717 - 9162036
Alignment:
| Q |
8 |
gtttgagcaaggggaaccaatctggaagctacaaaatcgtacactttggcagtgttgttgccatctaagagaatgttatcacacttgacatctctatgga |
107 |
Q |
| |
|
|||||| |||| |||||||| || |||||| ||||||| | ||||| ||| ||| ||| |||||||||||||||| || ||| ||||||||||||| |
|
|
| T |
9161717 |
gtttgatcaagtggaaccaacctcgaagctccaaaatcagaaacttttgcattgtaattgtcatctaagagaatgttggtactcttaacatctctatgga |
9161816 |
T |
|
| Q |
108 |
taataggtattgaggcatatgaatgtagatatgacaaagattcagctacctctgcggctatcttaagacgagttttccatgtttcattattcaccttaat |
207 |
Q |
| |
|
||||||||||||| ||| ||||||||| ||| || |||| | | ||| |||||| |||||||| | ||| |||||||||||| ||| || | ||| |
|
|
| T |
9161817 |
taataggtattgatgcagatgaatgtaaatacgataaagctccggctgtctctgctgctatctttaaacgtgttttccatgttggattgtttgctttatc |
9161916 |
T |
|
| Q |
208 |
acgttttgtgtgtataaaaccagaaagggtgccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgaca |
307 |
Q |
| |
|
| | ||||| ||| | |||| || |||||| |||| |||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
9161917 |
tttagtattatgtatgaaatcgaaaagtgtaccattgctaacgaattcatacaccaacgaaggaacttctgtctctaaacaacatcccaagagtttgaca |
9162016 |
T |
|
| Q |
308 |
acattcctatgatttatttg |
327 |
Q |
| |
|
||||| |||||||||||||| |
|
|
| T |
9162017 |
acatttctatgatttatttg |
9162036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 15 - 327
Target Start/End: Original strand, 9229518 - 9229830
Alignment:
| Q |
15 |
caaggggaaccaatctggaagctacaaaatcgtacactttggcagtgttgttgccatctaagagaatgttatcacacttgacatctctatggataatagg |
114 |
Q |
| |
|
|||| ||||||||||| ||||| ||||||| ||||||| ||||||| ||| |||| ||||||||||| ||| |||||||||||||||||||| || |
|
|
| T |
9229518 |
caagtggaaccaatcttgaagcaccaaaatcagacacttttgcagtgtaattgtcatccaagagaatgttggcacttttgacatctctatggataattgg |
9229617 |
T |
|
| Q |
115 |
tattgaggcatatgaatgtagatatgacaaagattcagctacctctgcggctatcttaagacgagttttccatgtttcattattcacctt---aatacgt |
211 |
Q |
| |
|
|| || ||| |||||||||||||||| |||| | | |||| || || |||||| | | ||| ||||||||| || ||||||| |||| ||||| |
|
|
| T |
9229618 |
taaggatgcagatgaatgtagatatgataaagctcctgctatttccgctgctatccttaaacgcgttttccatattgcattattttccttttcaatac-- |
9229715 |
T |
|
| Q |
212 |
tttgtgtgtataaaaccagaaagggtgccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacat |
311 |
Q |
| |
|
| ||||| || ||| | ||||||| |||||| ||| |||||||||||| | |||||||||| |||||| |||||||| ||||||||||||||||||| |
|
|
| T |
9229716 |
-tagtgtgcatcaaatcgaaaagggtaccattgctaataaattcataaactagtaaaggaacttgtgtctccaaacaacatcccaagagtttgacaacat |
9229814 |
T |
|
| Q |
312 |
tcctatgatttatttg |
327 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
9229815 |
ttctatgatttatttg |
9229830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 8 - 327
Target Start/End: Original strand, 9155805 - 9156124
Alignment:
| Q |
8 |
gtttgagcaaggggaaccaatctggaagctacaaaatcgtacactttggcagtgttgttgccatctaagagaatgttatcacacttgacatctctatgga |
107 |
Q |
| |
|
|||||| |||| ||||| || || |||||| |||||||| | ||||| || |||| ||| |||| ||||||||||| || |||||||||||||||| |
|
|
| T |
9155805 |
gtttgatcaagtggaactaacctcgaagctccaaaatcggaaactttcgctgtgtaattgtcatccaagagaatgttggtacttttgacatctctatgga |
9155904 |
T |
|
| Q |
108 |
taataggtattgaggcatatgaatgtagatatgacaaagattcagctacctctgcggctatcttaagacgagttttccatgtttcattattcaccttaat |
207 |
Q |
| |
|
|||| |||||||| ||| ||||||||||||| || |||| | | ||| |||||| |||||||| | ||| |||||||||||| ||| || ||| |
|
|
| T |
9155905 |
taatcggtattgatgcagatgaatgtagatacgataaagctccggctgtctctgctgctatctttaaacgggttttccatgttggattgtttgttttatc |
9156004 |
T |
|
| Q |
208 |
acgttttgtgtgtataaaaccagaaagggtgccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgaca |
307 |
Q |
| |
|
| | ||||| ||| || |||| || |||||| |||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
9156005 |
tttagtactatgtatgaaatcaaaaagtgtaccattgctaacgaattcataaaccaaggaaggaacttctgtctctaaacaacatcccaagagtttgaca |
9156104 |
T |
|
| Q |
308 |
acattcctatgatttatttg |
327 |
Q |
| |
|
||||| || ||||||||||| |
|
|
| T |
9156105 |
acatttctgtgatttatttg |
9156124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 8 - 338
Target Start/End: Complemental strand, 9118735 - 9118405
Alignment:
| Q |
8 |
gtttgagcaaggggaaccaatctggaagctacaaaatcgtacactttggcagtgttgttgccatctaagagaatgttatcacacttgacatctctatgga |
107 |
Q |
| |
|
|||||| |||| ||||||||| |||||||| | |||||| | ||||| ||||||| ||| |||| ||||||||||| || ||| ||||||||||||| |
|
|
| T |
9118735 |
gtttgatcaagtggaaccaatttggaagctccgaaatcggaaacttttgcagtgtaattgtcatccaagagaatgttggtactcttaacatctctatgga |
9118636 |
T |
|
| Q |
108 |
taataggtattgaggcatatgaatgtagatatgacaaagattcagctacctctgcggctatcttaagacgagttttccatgtttcattattcaccttaat |
207 |
Q |
| |
|
|||| || | ||| ||| ||||||||||||| || |||| | ||||| |||||| |||||| | ||||| |||| |||| || |||||| | ||| | |
|
|
| T |
9118635 |
taattggaaatgatgcagatgaatgtagatacgataaagctccagctgtctctgctgctatccttagacgtgtttcccatcttggattatttattttatt |
9118536 |
T |
|
| Q |
208 |
acgttttgtgtgtataaaaccagaaagggtgccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgaca |
307 |
Q |
| |
|
| | ||||| ||| | |||| || || | | |||| |||||||| ||||| |||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
9118535 |
cttagtattttgtatgaaatcgaaaagtgtaccgtggctaacgaattcatagaccaaggaaggaacttctgtctctaaacaacaccctaaaagtttgaca |
9118436 |
T |
|
| Q |
308 |
acattcctatgatttatttgagagagaataa |
338 |
Q |
| |
|
|||||||||||||||||||| || ||||||| |
|
|
| T |
9118435 |
acattcctatgatttatttgggacagaataa |
9118405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 8 - 327
Target Start/End: Original strand, 9170543 - 9170862
Alignment:
| Q |
8 |
gtttgagcaaggggaaccaatctggaagctacaaaatcgtacactttggcagtgttgttgccatctaagagaatgttatcacacttgacatctctatgga |
107 |
Q |
| |
|
|||||| |||| ||||||||||| |||||| | || ||| | ||||||||||||| ||| |||| ||||||||||| || ||| ||||||||||||| |
|
|
| T |
9170543 |
gtttgatcaagtggaaccaatcttgaagctccgaagtcggaaactttggcagtgtaattgtcatccaagagaatgttggtactcttaacatctctatgga |
9170642 |
T |
|
| Q |
108 |
taataggtattgaggcatatgaatgtagatatgacaaagattcagctacctctgcggctatc-ttaagacgagttttccatgtttcattattcaccttaa |
206 |
Q |
| |
|
|||| || ||||| ||| ||||||||||||| || |||| | ||||| |||||| |||||| ||||| || |||||||||||| |||||| ||| |
|
|
| T |
9170643 |
taattggaattgatgcagatgaatgtagatacgataaagctccagctgtctctgctgctatccttaag-cgggttttccatgttggattatttgttttat |
9170741 |
T |
|
| Q |
207 |
tacgttttgtg---tgtataaaaccagaaagggtgccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagttt |
303 |
Q |
| |
|
||| ||| ||||| ||| | |||| || || ||| |||||||||| || ||||| |||||||||||||||||| ||||||||| | |||||| |
|
|
| T |
9170742 |
c---tttagtgctttgtatgaaatcgaaaagtgtaccgttgctaacaaattcgtacaccaatgaaggaacttctgtctctagacaacaccctaggagttt |
9170838 |
T |
|
| Q |
304 |
gacaacattcctatgatttatttg |
327 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
9170839 |
gacaacattcctatgatttatttg |
9170862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 8 - 327
Target Start/End: Original strand, 9218626 - 9218945
Alignment:
| Q |
8 |
gtttgagcaaggggaaccaatctggaagctacaaaatcgtacactttggcagtgttgttgccatctaagagaatgttatcacacttgacatctctatgga |
107 |
Q |
| |
|
|||||| |||| ||||||||||| |||||| | || ||| | ||||| ||||||| ||| |||| ||||||||||| || ||| ||||||||||||| |
|
|
| T |
9218626 |
gtttgatcaagtggaaccaatcttgaagctccgaagtcggaaacttttgcagtgtaattgtcatccaagagaatgttggtactcttaacatctctatgga |
9218725 |
T |
|
| Q |
108 |
taataggtattgaggcatatgaatgtagatatgacaaagattcagctacctctgcggctatcttaagacgagttttccatgtttcattattcaccttaa- |
206 |
Q |
| |
|
|||| || ||||| ||| ||||||||||||||| |||| ||||| |||||| |||||| | | ||| |||||||||| | ||| || | ||| |
|
|
| T |
9218726 |
taattggaattgatgcagctgaatgtagatatgataaagcaccagctgtctctgctgctatccttaaacgtgttttccatgctggattgtttgctttatc |
9218825 |
T |
|
| Q |
207 |
--tacgttttgtgtgtataaaaccagaaagggtgccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttg |
304 |
Q |
| |
|
||| ||| ||||| ||| || |||| || || ||| ||||||||||||| |||||| |||||||||||||||| ||||||||||| || |||||| |
|
|
| T |
9218826 |
tttacaattt---tgtatgaaatcaaaaagtgttccgttgctaacaaattcatacaccaacgaaggaacttctgtctccaaacaacaccctaaaagtttg |
9218922 |
T |
|
| Q |
305 |
acaacattcctatgatttatttg |
327 |
Q |
| |
|
||||| ||||||||||||||||| |
|
|
| T |
9218923 |
acaacgttcctatgatttatttg |
9218945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 8 - 327
Target Start/End: Original strand, 9200110 - 9200429
Alignment:
| Q |
8 |
gtttgagcaaggggaaccaatctggaagctacaaaatcgtacactttggcagtgttgttgccatctaagagaatgttatcacacttgacatctctatgga |
107 |
Q |
| |
|
|||||| |||| |||||||||||||||||| |||| || | ||||| || |||| ||| |||| ||||||||||| || ||| |||||||| |||| |
|
|
| T |
9200110 |
gtttgatcaagtggaaccaatctggaagctccaaagtcagaaacttttgcggtgtaattgtcatccaagagaatgttggtactcttaacatctctgtgga |
9200209 |
T |
|
| Q |
108 |
taataggtattgaggcatatgaatgtagatatgacaaagattcagctacctctgcggctatcttaagacgagttttccatgtttcattattcaccttaat |
207 |
Q |
| |
|
|||| || ||||| ||| ||||||||||||||| |||| | ||||| ||| || |||||| | | ||| |||||||||||| |||||| ||| |
|
|
| T |
9200210 |
taattggaattgatgcagctgaatgtagatatgataaagctccagctgtctccgctgctatccttaaacgtgttttccatgttggattatttgttttatc |
9200309 |
T |
|
| Q |
208 |
acgttttgtg---tgtataaaaccagaaagggtgccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttg |
304 |
Q |
| |
|
||| ||| ||||| ||| | |||| || || ||| |||||||||| || || || |||||||||||||||||| |||||| || | ||||||| |
|
|
| T |
9200310 |
---tttagtgctttgtatgaaatcgaaaagtgtaccgttgctaacaaattcgtacactaatgaaggaacttctgtctctagacaacagcctaggagtttg |
9200406 |
T |
|
| Q |
305 |
acaacattcctatgatttatttg |
327 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
9200407 |
acaacattcctatgatttatttg |
9200429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 294
Target Start/End: Complemental strand, 37572203 - 37572123
Alignment:
| Q |
214 |
tgtgtgtataaaaccagaaagggtgccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccc |
294 |
Q |
| |
|
|||||||||||| ||||||| || |||||| ||||||| |||||||||||| |||||||||||| |||| ||||||||| |
|
|
| T |
37572203 |
tgtgtgtataaattcagaaagagtaccattgctaacaaactcataaaccaaccgaggaacttctgtttctagacaacaccc |
37572123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 332
Target Start/End: Complemental strand, 37567806 - 37567770
Alignment:
| Q |
296 |
aagagtttgacaacattcctatgatttatttgagaga |
332 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
37567806 |
aagagtttgaccacattcctatgatttatttgagaga |
37567770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 251 - 327
Target Start/End: Complemental strand, 40568463 - 40568387
Alignment:
| Q |
251 |
aattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttg |
327 |
Q |
| |
|
||||||||||| | ||| ||||||||||||||||||||||| |||||||| || || ||||| ||||| || ||||| |
|
|
| T |
40568463 |
aattcataaacaagcaagggaacttctgtctctaaacaacaacccaagagctttaccacatttctatggttgatttg |
40568387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 335
Target Start/End: Complemental strand, 40591369 - 40591285
Alignment:
| Q |
251 |
aattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttgagagagaa |
335 |
Q |
| |
|
||||||||||| | ||| ||||||||||||||||||||||| ||||| | | | || ||||| ||||| || |||||||| |||| |
|
|
| T |
40591369 |
aattcataaacaagcaatggaacttctgtctctaaacaacaacccaaaattcttaccacatttctatggttgatttgagaaagaa |
40591285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 327
Target Start/End: Complemental strand, 40597863 - 40597775
Alignment:
| Q |
239 |
ccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttg |
327 |
Q |
| |
|
||||||| || |||||||||||| | ||| ||||||||||| ||||||||||| || | ||||| || ||||||||||| || ||||| |
|
|
| T |
40597863 |
ccattgggaataaattcataaacaagcaatggaacttctgtttctaaacaacaacctacaagttttaccacattcctatggttgatttg |
40597775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 336
Target Start/End: Complemental strand, 40579533 - 40579436
Alignment:
| Q |
239 |
ccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttgagagagaat |
336 |
Q |
| |
|
||||||| || |||||| ||||| | || ||||||||||||||||||||||| ||||| | || || ||||| |||||||| ||||| || ||||| |
|
|
| T |
40579533 |
ccattgggaataaattcgtaaacaagtaacggaacttctgtctctaaacaacaacccaaaatctttaccacatttctatgattgatttgggaaagaat |
40579436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 299
Target Start/End: Complemental strand, 40573076 - 40573016
Alignment:
| Q |
239 |
ccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaaga |
299 |
Q |
| |
|
||||||| || ||||||||| || | || ||||||||||||||||||||||| ||||||| |
|
|
| T |
40573076 |
ccattgggaataaattcatacacaactaagggaacttctgtctctaaacaacagcccaaga |
40573016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 327
Target Start/End: Original strand, 2015288 - 2015349
Alignment:
| Q |
266 |
aaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttg |
327 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| || || ||||| ||||| || ||||| |
|
|
| T |
2015288 |
aaaggaacttctgtctctaaacaacaacccaagagctttaccacatttctatggttgatttg |
2015349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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