View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5228_low_10 (Length: 244)
Name: NF5228_low_10
Description: NF5228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5228_low_10 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 17 - 244
Target Start/End: Complemental strand, 3757442 - 3757204
Alignment:
| Q |
17 |
caaatttgtgggtttctttcataataatcactatagctcaatggcccagccttctaattttaaacttagaacatgagtttggtttgctaagtcctccaat |
116 |
Q |
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| T |
3757442 |
caaatttgtgggtttcttacataataatcactatagctcaatggcccagccttctaattttaaacttagaacatgagtttgatttgctaagtcctccaat |
3757343 |
T |
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| Q |
117 |
ttttgctttgctgctttgcata----------aacttcaataaaaagataataggattaattgtattttggcctccctgttataaagttcgtgaaaatat |
206 |
Q |
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| T |
3757342 |
ttttgctttgctgctttgcacaagtttctggcaacttcaataaaaaaataataggattaattgtattttggcctccctgttataaagttcgtgaaaatat |
3757243 |
T |
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| Q |
207 |
ttctc-ttttttcaaaatcaaatttttggtcctctattt |
244 |
Q |
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| T |
3757242 |
ttctctttttttcaaaatcaaatttttggtcctctattt |
3757204 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 43485674 - 43485734
Alignment:
| Q |
17 |
caaatttgtgggtttctttcataataatcactatagctcaatggcccagccttctaatttt |
77 |
Q |
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| T |
43485674 |
caaatttgtgtgtttcttacacaataatcactaatgcttagtggctcagccttctaatttt |
43485734 |
T |
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