View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5228_low_11 (Length: 244)
Name: NF5228_low_11
Description: NF5228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5228_low_11 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 13862646 - 13862419
Alignment:
| Q |
1 |
ttgattattcgaaacatcaaactgagctaacagttcatctataccattttcacataggaatggacgagaatctgagaatttatttttggacaggtccata |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||||||||| ||||| |||||||||||| |||||||||||||||||||||||| || || || ||| |
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|
| T |
13862646 |
ttgattatttgaaacatcaaactgagctaacatttcatctataacatttgcacataggaatgaacgagaatctgagaatttatttttcgatagatcaata |
13862547 |
T |
|
| Q |
101 |
aacccagaacctcgtagaaatggtggaatgggtccttcaaattcatttgatgaaagagataaaaaagaacaacgatttttgacttgaagatttggaatta |
200 |
Q |
| |
|
| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||| ||||||| |||| | |||||||||| |
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|
| T |
13862546 |
agtccagaacctcgtagaaatggtggaatgggcccttcaaaatcatttgatgaaagagataaaagagaacagtgattttttacttttaaatttggaattg |
13862447 |
T |
|
| Q |
201 |
atcctttgagattattgtttgaaatgtt |
228 |
Q |
| |
|
||||||| |||||||||||||||||||| |
|
|
| T |
13862446 |
atcctttaagattattgtttgaaatgtt |
13862419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 14025530 - 14025761
Alignment:
| Q |
1 |
ttgattattcgaaacatcaaactgagctaacagttcatctataccattttcacataggaatggacgagaatctgagaatttatttttggacaggtccata |
100 |
Q |
| |
|
|||||||||||||| |||||||| |||||| | ||||||||||||||| ||||||||||||| ||||||| |||||||| |||||||||| || || |
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| T |
14025530 |
ttgattattcgaaaggtcaaactggcctaacactgcatctataccatttttacataggaatggaagagaatcagagaatttgtttttggacaaatcagta |
14025629 |
T |
|
| Q |
101 |
aacccagaacctcgtagaaatggtggaatgggtccttcaaattcatttgatgaaagagataaaaaagaacaacgatttttgacttgaagatttggaatta |
200 |
Q |
| |
|
| ||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
14025630 |
actgtagaaccttttagaaatggtggaataggcccttcaaattcatttgatgaaagagataaaacagaacaacgatttttgacttgaagatttggaatta |
14025729 |
T |
|
| Q |
201 |
atcctttgagattattgtttgaaatgttgatg |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
14025730 |
atcctttgagattattgtttgaaatgttgatg |
14025761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 13892820 - 13892589
Alignment:
| Q |
1 |
ttgattattcgaaacatcaaactgagctaacagttcatctataccattttcacataggaatggacgagaatctgagaatttatttttggacaggtccata |
100 |
Q |
| |
|
||||||||| |||| |||||||| |||||| | ||||||||||||| ||||||||||||| ||||||| |||||||| |||||||||| ||| ||| |
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|
| T |
13892820 |
ttgattatttgaaaggtcaaactggcctaacattgaatctataccatttgtacataggaatggaagagaatcggagaatttgtttttggacaagtcaata |
13892721 |
T |
|
| Q |
101 |
aacccagaacctcgtagaaatggtggaatgggtccttcaaattcatttgatgaaagagataaaaaagaacaacgatttttgacttgaagatttggaatta |
200 |
Q |
| |
|
| ||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
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|
| T |
13892720 |
agtgtagaaccttttagaaatggtggaataggcccttcaaattcatttgatgaaagagataaaatagaacaataatttttgacttgaagatttggaatta |
13892621 |
T |
|
| Q |
201 |
atcctttgagattattgtttgaaatgttgatg |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
13892620 |
atcctttgagattattgtttgaaatgttgatg |
13892589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 13932597 - 13932828
Alignment:
| Q |
1 |
ttgattattcgaaacatcaaactgagctaacagttcatctataccattttcacataggaatggacgagaatctgagaatttatttttggacaggtccata |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||| | ||||| |||||||||| |||| |||||||| ||||||||||| ||||| |||||||||| || ||| |
|
|
| T |
13932597 |
ttgattatttgaaacatcaaactgagctaagatttcatttataccatttgcacaaaggaatgggcgagaatctgaaaatttgtttttggacaaatcaata |
13932696 |
T |
|
| Q |
101 |
aacccagaacctcgtagaaatggtggaatgggtccttcaaattcatttgatgaaagagataaaaaagaacaacgatttttgacttgaagatttggaatta |
200 |
Q |
| |
|
| |||||||| ||| ||||| |||||| || ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
13932697 |
agtgcagaaccttgtaaaaatgctggaataggcccttcaaattcatttgatgaaagagataaaagagaacagtgatttttgacttgaagatttggaattg |
13932796 |
T |
|
| Q |
201 |
atcctttgagattattgtttgaaatgttgatg |
232 |
Q |
| |
|
| ||||||||||||||||||||||| |||||| |
|
|
| T |
13932797 |
aacctttgagattattgtttgaaatattgatg |
13932828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 36 - 228
Target Start/End: Original strand, 14047614 - 14047806
Alignment:
| Q |
36 |
catctataccattttcacataggaatggacgagaatctgagaatttatttttggacaggtccataaacccagaacctcgtagaaatggtggaatgggtcc |
135 |
Q |
| |
|
||||||||||| ||||||||| ||||||| ||||||| ||||||||||||||||| || || || || ||||||||| ||||||| |||||| ||| || |
|
|
| T |
14047614 |
catctataccactttcacataagaatggaagagaatcggagaatttatttttggaaagatcaattaatccagaacctagtagaaaaggtggagtggaccc |
14047713 |
T |
|
| Q |
136 |
ttcaaattcatttgatgaaagagataaaaaagaacaacgatttttgacttgaagatttggaattaatcctttgagattattgtttgaaatgtt |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
14047714 |
ttcaaattcatttgatgaaagagataaaaaagaacattgacttttggcttgaagatttggaattaatcctttgagattattgtttaaaatgtt |
14047806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 14015399 - 14015632
Alignment:
| Q |
1 |
ttgattattcgaaacatcaaactgagctaacagttcatctataccattttcacataggaatggacgagaatctgagaatttatttttggacaggtccata |
100 |
Q |
| |
|
||||||||| |||| |||| ||| |||||| | |||||||||||||| |||||||||||||||||||||| |||||||| |||||||||| || ||| |
|
|
| T |
14015399 |
ttgattatttgaaaggtcaacctggcctaacattgcatctataccatttgcacataggaatggacgagaatcagagaatttgtttttggacaaatcaata |
14015498 |
T |
|
| Q |
101 |
aacccagaacctcgtagaaatggtggaatgggtccttcaaattcatttgatgaaagag--ataaaaaagaacaacgatttttgacttgaagatttggaat |
198 |
Q |
| |
|
| |||||||| ||||||||| |||||| || ||||||||||||||||||||||||| |||||||| || || | |||||||||||||||||||||| |
|
|
| T |
14015499 |
agttcagaaccttgtagaaatgctggaataggcccttcaaattcatttgatgaaagagatataaaaaaaaaaaattaattttgacttgaagatttggaat |
14015598 |
T |
|
| Q |
199 |
taatcctttgagattattgtttgaaatgttgatg |
232 |
Q |
| |
|
| | |||||||||||||||||||||||||||||| |
|
|
| T |
14015599 |
tgaacctttgagattattgtttgaaatgttgatg |
14015632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 13912072 - 13912295
Alignment:
| Q |
1 |
ttgattattcgaaacatcaaactgagctaacagttcatctataccattttcacataggaatggacgagaatctgagaatttatttttggacaggtccata |
100 |
Q |
| |
|
||||||||||| || |||||||| |||||| | |||||||||||||| |||| ||||||||| ||||||| ||||| || |||||||||| || ||| |
|
|
| T |
13912072 |
ttgattattcggaaggtcaaactggcctaacactgcatctataccatttgcacagaggaatggaagagaatcagagaacttgtttttggacaaatcaata |
13912171 |
T |
|
| Q |
101 |
aacccagaacctcgtagaaatggtggaatgggtccttcaaattcatttgatgaaagagataaaaaagaacaacgatttttgacttgaagatttggaatta |
200 |
Q |
| |
|
| ||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
13912172 |
actgtagaacctttgagaaatggtggaatgggcccttcaaattcatttgatgaaagtgataaaacagaacaaagattttttacttgaagatttggaatta |
13912271 |
T |
|
| Q |
201 |
atcctttgagattattgtttgaaa |
224 |
Q |
| |
|
| |||||||||||||||||||||| |
|
|
| T |
13912272 |
agcctttgagattattgtttgaaa |
13912295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 37 - 231
Target Start/End: Complemental strand, 13472777 - 13472583
Alignment:
| Q |
37 |
atctataccattttcacataggaatggacgagaatctgagaatttatttttggacaggtccataaacccagaacctcgtagaaatggtggaatgggtcct |
136 |
Q |
| |
|
|||| |||| ||| |||||||||| || |||||||| ||||| |||||||||||||| || ||||| |||||||| ||||||||||||||||| ||| |
|
|
| T |
13472777 |
atctctaccgtttgcacataggaaagggcgagaatcagagaacttatttttggacagatcaataaatgaagaacctcttagaaatggtggaatggaccct |
13472678 |
T |
|
| Q |
137 |
tcaaattcatttgatgaaagagataaaaaagaacaacgatttttgacttgaagatttggaattaatcctttgagattattgtttgaaatgttgat |
231 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||| || | ||||||||||| |
|
|
| T |
13472677 |
tcaaattcatttgatgaaagatataaaaaagaacaatgattttttacttgaagatttggaattaatcctttgagattgttataggaaatgttgat |
13472583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 14110725 - 14110956
Alignment:
| Q |
1 |
ttgattattcgaaacatcaaactgagctaacagttcatctataccattttcacataggaatggacgagaatctgagaatttatttttggacaggtccata |
100 |
Q |
| |
|
||||||||| |||| ||||| || |||||| | |||||||||||||| |||||| ||||||| |||||| ||||| || |||||||||||||| ||| |
|
|
| T |
14110725 |
ttgattatttgaaaggtcaaattggcctaacattacatctataccatttgcacataagaatggaaaagaatcagagaacttgtttttggacaggtcaata |
14110824 |
T |
|
| Q |
101 |
aacccagaacctcgtagaaatggtggaatgggtccttcaaattcatttgatgaaagagataaaaaagaacaacgatttttgacttgaagatttggaatta |
200 |
Q |
| |
|
| |||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||| ||| ||| |||||| ||||||||||||||||||| |
|
|
| T |
14110825 |
acatgggaaccttgtagaaatggtggaatgggcccttcaaattcatttaatgaaagagataaactagagcaataattttttacttgaagatttggaatta |
14110924 |
T |
|
| Q |
201 |
atcctttgagattattgtttgaaatgttgatg |
232 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |
|
|
| T |
14110925 |
ttcctttgagattattgtttgaaacgttgatg |
14110956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 13875116 - 13874886
Alignment:
| Q |
1 |
ttgattattcgaaacatcaaactgagctaacagttcatctataccattttcacataggaatggacgagaatctgagaatttatttttggacaggtccata |
100 |
Q |
| |
|
||||||||| |||| |||||||| ||||| ||||||||||||||||||||||| ||| || ||| | |||||||| |||||||||| || ||| |
|
|
| T |
13875116 |
ttgattatttgaaaggtcaaactggcctaacgcttcatctataccattttcacataaaaattgaatagagttagagaatttgtttttggacaaatcaata |
13875017 |
T |
|
| Q |
101 |
aacccagaacctcgtagaaatggtggaatgggtccttcaaattcatttgatgaaagagataaaaaagaacaacgatttttgacttgaagatttggaatta |
200 |
Q |
| |
|
| ||||||||| |||||||||||||||| |||||||||| |||||||| ||||||||||||||||||| ||||||| || |||||||| ||||||| |
|
|
| T |
13875016 |
gatacagaacctctgagaaatggtggaatggagccttcaaattgatttgatgcaagagataaaaaagaacaatgattttttacatgaagattcggaatta |
13874917 |
T |
|
| Q |
201 |
atcctttgagattattgtttgaaatgttgat |
231 |
Q |
| |
|
||||||||||||| |||| |||||||||||| |
|
|
| T |
13874916 |
atcctttgagattgttgtatgaaatgttgat |
13874886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 36 - 231
Target Start/End: Original strand, 14084951 - 14085146
Alignment:
| Q |
36 |
catctataccattttcacataggaatggacgagaatctgagaatttatttttggacaggtccataaacccagaacctcgtagaaatggtggaatgggtcc |
135 |
Q |
| |
|
|||||||||||||| |||||| ||||||| |||||| |||||||||||||||||| || ||| ||||||| ||||||||||||||||| || |
|
|
| T |
14084951 |
catctataccatttgcacatatgaatggaacagaatcattgaatttatttttggacagatcaatatttatggaacctctaagaaatggtggaatgggacc |
14085050 |
T |
|
| Q |
136 |
ttcaaattcatttgatgaaagagataaaaaagaacaacgatttttgacttgaagatttggaattaatcctttgagattattgtttgaaatgttgat |
231 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||| |||| | | || ||||| |||||| ||||||||| ||| |||| |||| |||||| |
|
|
| T |
14085051 |
ttcaaattcatttgatgacagaaataaaaaagaacaataatttcttatgtggagattcggaattgatcctttgaaattgttgtaagaaaggttgat |
14085146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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