View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5228_low_4 (Length: 393)
Name: NF5228_low_4
Description: NF5228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5228_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 8 - 257
Target Start/End: Complemental strand, 5351977 - 5351728
Alignment:
| Q |
8 |
aaattattcttggcatcttgatcaatcaaatcgccatcaccgttaaattttgctggaggctgaaacgcgtttaagaaaaactcgggtttattgatgaaat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5351977 |
aaattattcttggcatcttgatcaatcaaatcgccatcaccgttaaattttgctggaggctgaaacgcgtttaagaaaaactcgggtttattgatgaaat |
5351878 |
T |
|
| Q |
108 |
gaagatcaatgaaaacaccaatttggcggagatggtagtgtgactttgctccaccatgtcctcctccaacactcactatggcagcagactttccagccca |
207 |
Q |
| |
|
||||||| |||||||| |||||||| |||||||| |||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5351877 |
gaagatcgatgaaaactccaatttgtcggagatgatagtgtgactttgcaccgccgtgtcctcctccaacactcactatggcagcagactttccagccca |
5351778 |
T |
|
| Q |
208 |
aacatttggtggtcttgatgcccaatcaattgcattctttagtggggctg |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
5351777 |
aacatttggtggtcttgatgcccaatcaattgcattctttagtggagctg |
5351728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 12 - 257
Target Start/End: Complemental strand, 5344955 - 5344710
Alignment:
| Q |
12 |
tattcttggcatcttgatcaatcaaatcgccatcaccgttaaattttgctggaggctgaaacgcgtttaagaaaaactcgggtttattgatgaaatgaag |
111 |
Q |
| |
|
||||||| ||||||| |||||||||||| ||||||| ||||||||||||||||||||||| || ||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
5344955 |
tattcttagcatcttcatcaatcaaatcaccatcactattaaattttgctggaggctgaaaagcatttaagaaaaattcgggtttatttatgaaatgaag |
5344856 |
T |
|
| Q |
112 |
atcaatgaaaacaccaatttggcggagatggtagtgtgactttgctccaccatgtcctcctccaacactcactatggcagcagactttccagcccaaaca |
211 |
Q |
| |
|
||||| |||||| || ||||| |||||||| || ||||| ||||| |||||||| ||||||||| ||||||||||||| |||| || |||||||||||| |
|
|
| T |
5344855 |
atcaaggaaaactccgatttgtcggagatgatattgtgattttgcaccaccatgccctcctccagcactcactatggccgcaggtttaccagcccaaaca |
5344756 |
T |
|
| Q |
212 |
tttggtggtcttgatgcccaatcaattgcattctttagtggggctg |
257 |
Q |
| |
|
||||||| |||||||||||| |||| ||||||||||||||| |||| |
|
|
| T |
5344755 |
tttggtgatcttgatgcccagtcaagtgcattctttagtggagctg |
5344710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 86 - 257
Target Start/End: Original strand, 5325212 - 5325383
Alignment:
| Q |
86 |
aactcgggtttattgatgaaatgaagatcaatgaaaacaccaatttggcggagatggtagtgtgactttgctccaccatgtcctcctccaacactcacta |
185 |
Q |
| |
|
||||| ||||||||||||||||||| ||||| |||||| || |||||||||||||| | |||| ||| |||||||| |||||||||||||||| | |
|
|
| T |
5325212 |
aactcaggtttattgatgaaatgaatatcaaggaaaaccccgatttggcggagatgatgctgtgcttttcctccaccaaaggctcctccaacactcacaa |
5325311 |
T |
|
| Q |
186 |
tggcagcagactttccagcccaaacatttggtggtcttgatgcccaatcaattgcattctttagtggggctg |
257 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
5325312 |
tggcagcaggctttccagcccaaacatttggtggtcttgatgcccaatcaattgcattctttagcggggctg |
5325383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 86 - 252
Target Start/End: Original strand, 5338232 - 5338398
Alignment:
| Q |
86 |
aactcgggtttattgatgaaatgaagatcaatgaaaacaccaatttggcggagatggtagtgtgactttgctccaccatgtcctcctccaacactcacta |
185 |
Q |
| |
|
||||| ||||||||||||||||||| ||||| |||||| || |||||||||||||| | || | ||| |||||||| |||||||||||||||||| |
|
|
| T |
5338232 |
aactcaggtttattgatgaaatgaatatcaaggaaaaccccgatttggcggagatgatgttgagcttttcctccaccaaaggctcctccaacactcacta |
5338331 |
T |
|
| Q |
186 |
tggcagcagactttccagcccaaacatttggtggtcttgatgcccaatcaattgcattctttagtgg |
252 |
Q |
| |
|
||||||||| || |||||||| |||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
5338332 |
tggcagcagttttaccagcccatacatttggtggtcttgatccccaatcaagtgcattctttagtgg |
5338398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 321 - 393
Target Start/End: Complemental strand, 5351664 - 5351592
Alignment:
| Q |
321 |
catgatgttgacttacctgagacagaataattatattcaggagaagcaaagagaacactatcagcagcaagaa |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5351664 |
catgatgttgacttacctgagacagaataattatattcaggagaagcaaagagaacactatcagcagcaagaa |
5351592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 321 - 385
Target Start/End: Original strand, 5325456 - 5325520
Alignment:
| Q |
321 |
catgatgttgacttacctgagacagaataattatattcaggagaagcaaagagaacactatcagc |
385 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5325456 |
catgatgtttacttacctgagacagaataattatactcaggagaagcaaagagaacactatcagc |
5325520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 321 - 385
Target Start/End: Complemental strand, 5343879 - 5343815
Alignment:
| Q |
321 |
catgatgttgacttacctgagacagaataattatattcaggagaagcaaagagaacactatcagc |
385 |
Q |
| |
|
||||||||| || ||||||| ||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
5343879 |
catgatgtttacctacctgaaacagaataattattttcaggagaagcaaagagaaagctatcagc |
5343815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 246
Target Start/End: Original strand, 14535340 - 14535575
Alignment:
| Q |
11 |
ttattcttggcatcttgatcaatcaaatcgccatcaccgttaaattttgctggaggctgaaacgcgtttaagaaaaactcgggtttattgatgaaatgaa |
110 |
Q |
| |
|
|||||||| || |||| ||||||||||||||||||| || || ||||| || |||| ||| || ||| || ||||| ||||||||||||||||||| |
|
|
| T |
14535340 |
ttattcttagcctcttcatcaatcaaatcgccatcagtattgaactttgcaggtggctcaaatgctcttataaagaactcaggtttattgatgaaatgaa |
14535439 |
T |
|
| Q |
111 |
gatcaatgaaaacaccaatttggcggagatggtagtgtgactttgctccaccatgtcctcctccaacactcactatggcagcagactttccagcccaaac |
210 |
Q |
| |
|
|||| || ||| |||| |||||| ||||| |||||||| || | || ||| |||||||| || | || ||||| | || ||||||||||| |
|
|
| T |
14535440 |
gatcgatataaattccaacttggcgtagatgatagtgtgatcttccaccgccaaagtctcctccagtgcttatgattgcagctgctttgccagcccaaac |
14535539 |
T |
|
| Q |
211 |
atttggtggtcttgatgcccaatcaattgcattctt |
246 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |
|
|
| T |
14535540 |
atttggtggtctagatgcccaatcaattgcattctt |
14535575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 334 - 385
Target Start/End: Original strand, 14536649 - 14536700
Alignment:
| Q |
334 |
tacctgagacagaataattatattcaggagaagcaaagagaacactatcagc |
385 |
Q |
| |
|
|||||| |||||| || ||||| |||||||||||||| |||||||||||||| |
|
|
| T |
14536649 |
tacctgtgacagagtagttatactcaggagaagcaaaaagaacactatcagc |
14536700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University