View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5228_low_5 (Length: 351)
Name: NF5228_low_5
Description: NF5228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5228_low_5 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 39 - 351
Target Start/End: Original strand, 3756853 - 3757164
Alignment:
| Q |
39 |
tattcttcacaccaaatgccaatcattgtattgcctcttatagcatgaggggaaggctttcctctcatcagctccttcatttgttgacacgctgtaatta |
138 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3756853 |
tattcttcacaccaaatgccaatcattgtattgcctcttatagcatgaggggaaggctttcctctcatcagctccttcatttgttgacacgctgtaatta |
3756952 |
T |
|
| Q |
139 |
ttttggtttagttgtagttttggtctctcaattttattaatctcgcacaaataatccctcttttctaaaatcaaannnnnnnnnctctctattttcatat |
238 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
3756953 |
ttttggtttagttgtacttttggtctctcaattttattaatctcgcataaataatccctcttttctaaaatcaaattttttgttttctctattttcatat |
3757052 |
T |
|
| Q |
239 |
ttgttgtaattttgttctcaatccatatatttttgccctagaaatggtcacttttggcaacaaaaaagatgttttttggt-ttaaataagtgatattaat |
337 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||| ||||||||||||| |
|
|
| T |
3757053 |
ttgttgtaattttgttctcaatcc--atatttttgccctagaaatggtcacttttggcaacaaaaaagatgtattttggtctaaaaaaagtgatattaat |
3757150 |
T |
|
| Q |
338 |
tagtttttcgatta |
351 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
3757151 |
ttgtttttcgatta |
3757164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 229 - 272
Target Start/End: Original strand, 4903957 - 4904000
Alignment:
| Q |
229 |
attttcatatttgttgtaattttgttctcaatccatatattttt |
272 |
Q |
| |
|
||||||||||||||||||| |||| ||| ||||||||||||||| |
|
|
| T |
4903957 |
attttcatatttgttgtaactttgatcttaatccatatattttt |
4904000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 224 - 271
Target Start/End: Complemental strand, 43486017 - 43485970
Alignment:
| Q |
224 |
tctctattttcatatttgttgtaattttgttctcaatccatatatttt |
271 |
Q |
| |
|
|||||| ||| |||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
43486017 |
tctctacttttatatttgttgtaattttggtctcaatccatatttttt |
43485970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University