View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5228_low_9 (Length: 261)
Name: NF5228_low_9
Description: NF5228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5228_low_9 |
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| [»] scaffold0386 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 9 - 245
Target Start/End: Complemental strand, 6073861 - 6073623
Alignment:
| Q |
9 |
gattattctatacatgcatgcaaaaattgtaccacaatacttgagctctgaaattgacatatactttgcaaaccactatatataagtttctaccatcatt |
108 |
Q |
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| T |
6073861 |
gattattctatacatgcatgcaaaaattgtaccacaatacttgagctctgaaattgacatatactttgcaaaccactatatataagtttctaccatcatg |
6073762 |
T |
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| Q |
109 |
ctaatgattatcaacctcctacaatcatttacacacgtgttcctttatttacccattggctcaataag--nnnnnnnncattgtctcaataaatatttct |
206 |
Q |
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| T |
6073761 |
ctaatgattatcaacctcctacaatcatttacacacatgttcctttatttacccattgggtcaataagaaaaaaaaaacattgtctcaataaatatttct |
6073662 |
T |
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| Q |
207 |
tgggtattgattcaagaattggtaatctgcatcctgatg |
245 |
Q |
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| T |
6073661 |
tgggtattggttcaagaattggtaatttgcatcctgatg |
6073623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 11 - 159
Target Start/End: Complemental strand, 6069232 - 6069084
Alignment:
| Q |
11 |
ttattctatacatgcatgcaaaaattgtaccacaatacttgagctctgaaattgacatatactttgcaaaccactatatataagtttctaccatcattct |
110 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||| ||||| || |
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| T |
6069232 |
ttattctatgcatgcatgcaaaaattgtaccacaatacttgagcactgaaattgacatatactttgcgaactactatatataagtttctacaatcatgct |
6069133 |
T |
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| Q |
111 |
aatgattatcaacctcctacaatcatttacacacgtgttcctttattta |
159 |
Q |
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| T |
6069132 |
aatcatcatcaacctcctacaatcatttacacacatgttcctttattta |
6069084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 58 - 159
Target Start/End: Original strand, 5697553 - 5697656
Alignment:
| Q |
58 |
gaaattgacatatactttgcaaaccactata--tataagtttctaccatcattctaatgattatcaacctcctacaatcatttacacacgtgttccttta |
155 |
Q |
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||||||||||||||||||||| ||||||||| ||||||||||||| ||||| ||||| || |||| |||||||||||||||||||||| |||||||||| |
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| T |
5697553 |
gaaattgacatatactttgcataccactatatatataagtttctacaatcatgctaatcatcatcagcctcctacaatcatttacacacatgttccttta |
5697652 |
T |
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| Q |
156 |
ttta |
159 |
Q |
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|||| |
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| T |
5697653 |
ttta |
5697656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 6069078 - 6069020
Alignment:
| Q |
185 |
cattgtctcaataaatatttcttgggtattgattcaagaattggtaatctgcatcctga |
243 |
Q |
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| T |
6069078 |
cattgcctcaataaatatttcttgtgtattggttcaagaattggtaatctgcatcctga |
6069020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 191 - 239
Target Start/End: Original strand, 5697668 - 5697716
Alignment:
| Q |
191 |
ctcaataaatatttcttgggtattgattcaagaattggtaatctgcatc |
239 |
Q |
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| T |
5697668 |
ctcaataaatatttcttgtgtattggtttaagaattggtaatctgcatc |
5697716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0386 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: scaffold0386
Description:
Target: scaffold0386; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 9 - 156
Target Start/End: Complemental strand, 459 - 312
Alignment:
| Q |
9 |
gattattctatacatgcatgcaaaaattgtaccacaatacttgagctctgaaattgacatatactttgcaaaccactatatataagtttctaccatcatt |
108 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
459 |
gattattctatacatgcatgcaaaaattgtaccacaacacttgagcactgaaattgacataaactttgcaaaccactatatataagtttctacaatcatg |
360 |
T |
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| Q |
109 |
ctaatgattatcaacctcctacaatcatttacacacgtgttcctttat |
156 |
Q |
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| T |
359 |
ctaatcatcatcaacctcctacaatcatttacacacatattcctttat |
312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0386; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 239
Target Start/End: Complemental strand, 299 - 251
Alignment:
| Q |
191 |
ctcaataaatatttcttgggtattgattcaagaattggtaatctgcatc |
239 |
Q |
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| T |
299 |
ctcaataaatatttcttatgtattggtttaagaattggtaatctgcatc |
251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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