View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5229-Insertion-1 (Length: 949)
Name: NF5229-Insertion-1
Description: NF5229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5229-Insertion-1 |
 | |
|
| [»] chr7 (6 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 830; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 830; E-Value: 0
Query Start/End: Original strand, 7 - 949
Target Start/End: Original strand, 33742777 - 33743722
Alignment:
| Q |
7 |
aataatcatttttcatttatactagtttcaaatgggacaacattctttaataatcatttttggtttattattgtaggaaatgaagcagagacaagatcag |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
33742777 |
aataatcatttttcatttatactagtttcaaatgggacaacattctttaataatcatttttggtttattattgtaggaaatgaagcaaagacaagatcag |
33742876 |
T |
|
| Q |
107 |
atgtgagagacgagacgacgcaagagattgtttcgagtatcgctagaattatatctgaatgttggatttcgaatgtagatagatacacctttttaaatat |
206 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33742877 |
atgtgagagacgagacgacgcaggagattgtttcgagtatcgctagaattatatctgaatgttggatttcgaatgtagatagatacacctttttaaatat |
33742976 |
T |
|
| Q |
207 |
agctaagatgcatgtttggtgattgttttactttttgtggacatattttcttggtgtaaattattagtcaaatgatcaccaatggaagttaaactcggtg |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33742977 |
agctaagatgcatgtttggtgattgttttactttttgtggacatattttcttggtgtaaattattagtcaaatgatcaccaatggaagttaaactcggtg |
33743076 |
T |
|
| Q |
307 |
aaatgtgttagactgatacaatgtgacaaactaaaatccaaattttgattgaaagatgtgtccttcgcatagcaatctcatcaggcgcggtgtgccgctt |
406 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
33743077 |
aaatgtgttagactgttacaatgtgacaaactaaaatccgaattttgattgaaagatgtgtccttcgcataacaatctcatcaggcgcggtgtgccgctt |
33743176 |
T |
|
| Q |
407 |
cctgtcgatgggatgaggtgtctcttctgcgacgggccgtctgagtctacagttcacttgttcctttcttgtccttccttcttcccggtgtggtatcagg |
506 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33743177 |
cctgtcgatgggatggggtgtgtcttctgcgacgggccgtctgagtctacagttcacttgttcctttcttgtccttccttcttcccggtgtggtatcagg |
33743276 |
T |
|
| Q |
507 |
tgtcttgatggatggctgggttgggagtttgtgatgcctctggggctagcccagcagtttcaggcttttacgggtttgggaggggggaggaaagttaggt |
606 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
33743277 |
tgtcttgatggatggctgggttgggagtttgtgatgcctctggggctagcccaacagtttcaggcttttacgggtttaggaggggggaggaaagttaggt |
33743376 |
T |
|
| Q |
607 |
tatgtttgcttcttgtttggcatgatgttatttggaccatttgggtgtcccgaaacgaccttatctttactggtggcttcctccgagaggagccagtggt |
706 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
33743377 |
tatgtttgcttcttgtttggcatgctgttatttggaccatttgggcgtcccgaaacgaccttatctttgctggtggcttactccgagaggagccagtggt |
33743476 |
T |
|
| Q |
707 |
ggacatagttaaaatcttagcttaaaaatggttcctggctaagtgccctgctagtccctattctctctatgaatgggaggtgcaacccgtcctgtgtttg |
806 |
Q |
| |
|
||||| ||||||||||||||||| ||| |||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
33743477 |
ggacagagttaaaatcttagcttgaaagtggttcttggctaagtgccctgctagtccctgttctctctatgagtgggaggtgcaacccgtcctgtgtttg |
33743576 |
T |
|
| Q |
807 |
agtcggtagggttttatggtggtgggttttcatggggctgcttgtggggctagg-tgggtcatat-ccccccttccttcccggtgtggc-tttcaggctt |
903 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
33743577 |
agtcggtagggttttatggtggtgggttttcctggggctgcttgcggggctaggcggggtcatatcccccccttccttcccggtgtggcttttcaggctt |
33743676 |
T |
|
| Q |
904 |
ttcttgttgttctttatgtttgcaggtgtttactaggcttgctgcg |
949 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
33743677 |
ttcttgttgttctttatgtttgcaggtgtttactgggcttgctgcg |
33743722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 523 - 761
Target Start/End: Complemental strand, 26558097 - 26557859
Alignment:
| Q |
523 |
tgggttgggagtttgtgatgcctctggggctagcccagcagtttcaggcttttacgggtttgggaggggggaggaaagttaggttatgtttgcttcttgt |
622 |
Q |
| |
|
|||||||||| ||||||||||| ||||| ||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
26558097 |
tgggttgggattttgtgatgcccatggggttagcccagcagtttcaggcctttacgggtttaggaggggggaggagagttaggttaggtttgcttcttgt |
26557998 |
T |
|
| Q |
623 |
ttggcatgatgttatttggaccatttgggtgtcccgaaacgaccttatctttactggtggcttcctccgagaggagccagtggtggacatagttaaaatc |
722 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||| ||||||| ||||||| |||||||||| ||||| |||||||| |||||||||| ||||||| | |
|
|
| T |
26557997 |
ttggcatgttgttatttggaccatttgggcatcctagaacgaccgtatctttgctggtggcttactccgtgaggagcctgtggtggacagagttaaactt |
26557898 |
T |
|
| Q |
723 |
ttagcttaaaaatggttcctggctaagtgccctgctagt |
761 |
Q |
| |
|
||||||| | ||| ||||||||||||||||||||||| |
|
|
| T |
26557897 |
ttagcttggtagtggctcctggctaagtgccctgctagt |
26557859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 632 - 934
Target Start/End: Original strand, 12258305 - 12258608
Alignment:
| Q |
632 |
tgttatttggaccatttgggtgtcccgaaacgaccttatctttactggtggcttcctccgagaggagccagtggtggacatagttaaaatcttagcttaa |
731 |
Q |
| |
|
||||||||||| | |||||| ||| || ||||||||||| ||| ||||||| || ||||| ||||| | ||||||| | ||||||| ||||||||| | |
|
|
| T |
12258305 |
tgttatttggatcgtttgggcgtcacggaacgaccttatttttgctggtggtttactccgtgaggaacttatggtggatagagttaaactcttagcttga |
12258404 |
T |
|
| Q |
732 |
aaatggttcctggctaagtgccctgctagtccctattctctctatgaatgggaggtgcaacccgtcctgtgtttgagtcggtagggttttatggtggtgg |
831 |
Q |
| |
|
|| ||||||||||||||||| ||||| ||||||| ||||||||||| ||||||||||| | ||| |||||||||||||||||||| ||| |||| || | |
|
|
| T |
12258405 |
aagtggttcctggctaagtgtcctgccagtccctgctctctctatgagtgggaggtgcagctcgttctgtgtttgagtcggtaggggtttgtggtagttg |
12258504 |
T |
|
| Q |
832 |
gttttcatggggctgcttg-tggggctaggt-gggtcatatccccccttccttcccggtgtggctttcaggcttttcttgttgttctttatgtttgcagg |
929 |
Q |
| |
|
| || | ||||||||| | | ||| | ||| ||||| |||| ||| |||||| ||||||| || || || ||||||||||||||||| || ||||||| |
|
|
| T |
12258505 |
g-ttacttggggctgccggtttggggtgggtggggtcgtatctcccattcctttccggtgttgccttggggtttttcttgttgttctttgtgcttgcagg |
12258603 |
T |
|
| Q |
930 |
tgttt |
934 |
Q |
| |
|
||||| |
|
|
| T |
12258604 |
tgttt |
12258608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 589 - 804
Target Start/End: Original strand, 33888502 - 33888718
Alignment:
| Q |
589 |
gggggaggaaagttaggttatgtttgcttcttgtttggcatgatgttatttggaccatttgggtgtcccgaaacgaccttatctttactggtggcttcct |
688 |
Q |
| |
|
|||||| || |||||||||| || | |||||||||||| ||||||||||||||| ||||||||||| | || || ||||||||| | |||||||| || |
|
|
| T |
33888502 |
gggggaagagagttaggttaggtctacttcttgtttggaatgatgttatttggatcatttgggtgtttcagaatgatcttatctttgccggtggcttact |
33888601 |
T |
|
| Q |
689 |
ccga-gaggagccagtggtggacatagttaaaatcttagcttaaaaatggttcctggctaagtgccctgctagtccctattctctctatgaatgggaggt |
787 |
Q |
| |
|
||| |||||| |||||||||| | ||| || |||||| || || ||||| | ||||||||||||||||||| | |||||||||||||| ||| |||| |
|
|
| T |
33888602 |
ccggtgaggagtcagtggtggatagagtggaactcttagattggaagtggtttcgggctaagtgccctgctagttcatattctctctatgagtggaaggt |
33888701 |
T |
|
| Q |
788 |
gcaacccgtcctgtgtt |
804 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
33888702 |
gcaacccgtcctatgtt |
33888718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 555 - 646
Target Start/End: Complemental strand, 40188427 - 40188337
Alignment:
| Q |
555 |
gcccagcagtttcaggcttttacgggtttgggaggggggaggaaagttaggttatgtttgcttcttgtttggcatgatgttatttggaccat |
646 |
Q |
| |
|
||||||||||| |||| ||| ||||| || |||||||| || | |||||||||| | |||||||||||||| |||| |||| |||||||||| |
|
|
| T |
40188427 |
gcccagcagttccaggttttcacggggttaggagggggaag-agagttaggttaggattgcttcttgtttgacatggtgttgtttggaccat |
40188337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 771 - 902
Target Start/End: Complemental strand, 26556499 - 26556371
Alignment:
| Q |
771 |
ctctatgaatgggaggtgcaacccgtcctgtgtttgagtcggtagggttttatggtgg-tgggttttcatggggctgcttgtggggctaggtgggtcata |
869 |
Q |
| |
|
|||||||| ||||||||||| ||| ||||||| |||| || |||||||||| |||||| | | ||||| ||||| |||||| ||| | ||||| || |
|
|
| T |
26556499 |
ctctatgagtgggaggtgcagcccatcctgtgcttgaatcagtagggttttgtggtggtttgtttttcctggggttgcttgcggg----gtggggtcgta |
26556404 |
T |
|
| Q |
870 |
tccccccttccttcccggtgtggctttcaggct |
902 |
Q |
| |
|
|| |||||||||| | ||||||||||| ||||| |
|
|
| T |
26556403 |
tctccccttcctttcaggtgtggcttttaggct |
26556371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 215; Significance: 1e-117; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 440 - 918
Target Start/End: Original strand, 51870945 - 51871420
Alignment:
| Q |
440 |
gggccgtctgagtctacagttcacttgttcctttcttgtccttccttcttcccggtgtggtatcaggtgtcttgatggatggctgggttgggagtttgtg |
539 |
Q |
| |
|
||||||||||||||| | || || |||||||||||||| ||||| || |||||||||||||||||||||||| | || ||| |||||||||||||| |
|
|
| T |
51870945 |
gggccgtctgagtcttcggtgcatttgttcctttcttgcccttcttttttcccggtgtggtatcaggtgtctcgctgtttgg----gttgggagtttgtg |
51871040 |
T |
|
| Q |
540 |
atgcctctggggctagcccagcagtttcaggcttttacgggtttgggaggggggaggaaagttaggttatgtttgcttcttgtttggcatgatgttattt |
639 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||| ||||||||||| || ||||||| || |||||||||| ||||||||||||||||||||| |||||| | |
|
|
| T |
51871041 |
atgcctcttgggctagtccagcagtttcaggcctttacgggtttaggtggggggacgagagttaggttaggtttgcttcttgtttggcatgctgttatct |
51871140 |
T |
|
| Q |
640 |
ggaccatttgggtgtcccgaaacgaccttatctttactggtggcttcctccgagaggagccagtggtggacatagttaaaatcttagcttaaaaatggtt |
739 |
Q |
| |
|
||||||||||| | ||||||| |||||||||||| || ||| | ||||| ||||||||||||||||| | | ||||| ||||||||| || ||||| |
|
|
| T |
51871141 |
ggaccatttggacgacccgaaatgaccttatctttgttgttggtgttctccgtgaggagccagtggtggatagaattaaactcttagcttggaagtggtt |
51871240 |
T |
|
| Q |
740 |
cctggctaagtgccctgctagtccctattctctctatgaatgggaggtgcaacccgtcctgtgtttgagtcggtagggttttatggtggtgggttttcat |
839 |
Q |
| |
|
|||| ||||||||||||||||| ||| |||||||||||| ||||||||||| |||||||||||||||| ||||||||||||| || |||||||| ||| | |
|
|
| T |
51871241 |
cctgactaagtgccctgctagttcctgttctctctatgagtgggaggtgcagcccgtcctgtgtttgaatcggtagggttttgtgatggtgggtgttcct |
51871340 |
T |
|
| Q |
840 |
ggggctgcttgtggggctaggt-gggtcatatccccccttccttcccggtgtggctttcaggcttttcttgttgttcttt |
918 |
Q |
| |
|
||||||||||| |||| | ||| |||| |||| |||||||||||| ||||||||| | || ||||||||||||||||| |
|
|
| T |
51871341 |
ggggctgcttgcggggttgggtggggttgtatctccccttccttcctagtgtggcttccggggttttcttgttgttcttt |
51871420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 519 - 947
Target Start/End: Complemental strand, 3227919 - 3227499
Alignment:
| Q |
519 |
tggctgggttgggagtttgtgatgcctctggggctagcccagcagtttcaggcttttacgggtttgggaggggggaggaaagttaggttatgtttgcttc |
618 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||| ||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
3227919 |
tggctgggttgggagtttgtgatgcctctagggctagcctagcagtttcaggcctttacaggtttaggtggggggaggaaagttaggttatgtttgcttt |
3227820 |
T |
|
| Q |
619 |
ttgtttggcatgatgttatttggaccatttgggtgtcccgaaacgaccttatctttactggtggcttcctccgagaggagccagtggtggacatagttaa |
718 |
Q |
| |
|
|||||| ||||| |||||||||||||||| ||| |||||| || |||||||||||| ||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
3227819 |
ttgtttagcatgctgttatttggaccattcgggcgtcccgtaatgaccttatctttgctggtgg--------gagaggagccaatggtggacatagttaa |
3227728 |
T |
|
| Q |
719 |
aatcttagcttaaaaatggttcctggctaagtgccctgctagtccctattctctctatgaatgggaggtgcaacccgtcctgtgtttgagtcggtagggt |
818 |
Q |
| |
|
| ||||||||| ||| || ||||||| ||||||||||||||||| || |||||||||||| ||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
3227727 |
actcttagcttgaaagtgattcctggttaagtgccctgctagtctctgttctctctatgagtgggaagtgcaacccgt-ctgtgtttgagtcggtagggt |
3227629 |
T |
|
| Q |
819 |
tttatggtggtgggttttcatggggctgcttgtggggctaggt-gggtcatatccccccttccttcccggtgtggctttcaggcttttcttgttgttctt |
917 |
Q |
| |
|
||| ||||||||| | ||| |||||||||||| |||| | ||| ||||| |||| |||||||||||| |||||||||||| | ||||||||||||| || |
|
|
| T |
3227628 |
tttgtggtggtggttgttcctggggctgcttgcggggttgggtggggtcgtatctccccttccttcctagtgtggctttcaagtttttcttgttgttttt |
3227529 |
T |
|
| Q |
918 |
tatgtttgcaggtgtttactaggcttgctg |
947 |
Q |
| |
|
| | |||||||||||| | ||||||||| |
|
|
| T |
3227528 |
tgtacttgcaggtgtttgttgggcttgctg |
3227499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 448 - 837
Target Start/End: Original strand, 15274103 - 15274482
Alignment:
| Q |
448 |
tgagtctacagttcacttgttcctttcttgtccttccttcttcccggtgtggtatcaggtgtcttgatggatggctgggttgggagtttgtgatgcctct |
547 |
Q |
| |
|
||||||| | || |||||||||||||| |||||||||||||| || ||||||||||||||||| | | ||| |||||||||||||||||||||| | |
|
|
| T |
15274103 |
tgagtctgcggtgcacttgttcctttcctgtccttccttctttccagtgtggtatcaggtgtc----taggtggttgggttgggagtttgtgatgccctt |
15274198 |
T |
|
| Q |
548 |
ggggctagcccagcagtttcaggcttttacgggtttgggaggggggaggaaagttaggttatgtttgcttcttgtttggcatgatgttatttggaccatt |
647 |
Q |
| |
|
||||||||||| | ||||| | ||||||||||| |||||| || ||||| |||| |||||||||||||||| |||| ||||| ||||||||| |
|
|
| T |
15274199 |
agggctagcccaaccttttcaatcctttacgggttt----agggggaagagagttatgttaggtttgcttcttgtttgtcatgttgtta--tggaccatt |
15274292 |
T |
|
| Q |
648 |
tgggtgtcccgaaacgaccttatctttactggtggcttcctccgagaggagccagtggtggacatagttaaaatcttagcttaaaaatggttcctggcta |
747 |
Q |
| |
|
|||| |||||||||||||||||||||| || ||| ||| ||||||||||||||||||||||||| ||| ||| | ||||||| || || ||||| |||| |
|
|
| T |
15274293 |
tgggcgtcccgaaacgaccttatctttgctagtgacttactccgagaggagccagtggtggacagagtgaaacttttagcttgtaagtgattcctagcta |
15274392 |
T |
|
| Q |
748 |
agtgccctgctagtccctattctctctatgaatgggaggtgcaacccgtcctgtgtttgagtcggtagggttttatggtggtgggttttc |
837 |
Q |
| |
|
|||| ||||||||| | | |||||||||||| ||||||||||| | |||||||||| || ||||||||||||| ||||||| ||||||| |
|
|
| T |
15274393 |
agtgtcctgctagttcatgttctctctatgagtgggaggtgcagtctgtcctgtgttggaatcggtagggttttgtggtggttggttttc |
15274482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 621 - 709
Target Start/End: Original strand, 9644290 - 9644378
Alignment:
| Q |
621 |
gtttggcatgatgttatttggaccatttgggtgtcccgaaacgaccttatctttactggtggcttcctccgagaggagccagtggtgga |
709 |
Q |
| |
|
||||| |||| ||||||||||||||| ||| ||||||| |||||||||||||| ||||||||| ||||| |||||||| ||||||| |
|
|
| T |
9644290 |
gtttgacatgttgttatttggaccatctggatgtcccggaacgaccttatcttctctggtggctctctccgtgaggagcctatggtgga |
9644378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 721 - 829
Target Start/End: Original strand, 52372689 - 52372797
Alignment:
| Q |
721 |
tcttagcttaaaaatggttcctggctaagtgccctgctagtccctattctctctatgaatgggaggtgcaacccgtcctgtgtttgagtcggtagggttt |
820 |
Q |
| |
|
|||||||||| || ||||||||||||| ||||||||||||| ||| ||| | ||||| ||||||||||||||| |||| |||| | ||||||||| | |
|
|
| T |
52372689 |
tcttagcttagaagtggttcctggctaggtgccctgctagttcctgctctttttatgagtgggaggtgcaacccatcctttgttggcagcggtagggtgt |
52372788 |
T |
|
| Q |
821 |
tatggtggt |
829 |
Q |
| |
|
| ||||||| |
|
|
| T |
52372789 |
tgtggtggt |
52372797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 690 - 804
Target Start/End: Complemental strand, 25410679 - 25410565
Alignment:
| Q |
690 |
cgagaggagccagtggtggacatagttaaaatcttagcttaaaaatggttcctggctaagtgccctgctagtccctattctctctatgaatgggaggtgc |
789 |
Q |
| |
|
|||||||| || ||| |||| | ||| ||| ||||||||| || |||||||||||||||| || ||||||| ||| ||| ||||||| |||||||||| |
|
|
| T |
25410679 |
cgagaggaacctgtgatggatagagtgaaactcttagcttggaagtggttcctggctaagtaccttgctagttcctgctctttctatgagtgggaggtgc |
25410580 |
T |
|
| Q |
790 |
aacccgtcctgtgtt |
804 |
Q |
| |
|
| |||||| |||||| |
|
|
| T |
25410579 |
agcccgtcttgtgtt |
25410565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 605 - 761
Target Start/End: Original strand, 21926522 - 21926677
Alignment:
| Q |
605 |
gttatgtttgcttcttgtttggcatgatgttatttggaccatttgggtgtcccgaaacgaccttatctttactggtggcttcctccgagaggagccagtg |
704 |
Q |
| |
|
|||| |||| ||||| ||||| |||| | |||||||||||||||||||||| | ||| ||||||| || |||||||| | | | |||||| | ||| |
|
|
| T |
21926522 |
gttaggttttcttctggtttgacatgctattatttggaccatttgggtgtctaggaacaaccttattttctctggtggcactccctgtgaggagtctgtg |
21926621 |
T |
|
| Q |
705 |
gtggacatagttaaaatcttagcttaaaaatggttcctggctaagtgccctgctagt |
761 |
Q |
| |
|
||||| | ||| ||| ||||||| | || ||||| ||||||||||||||||||||| |
|
|
| T |
21926622 |
gtggatagagtgaaactcttagcctggaagtggtt-ctggctaagtgccctgctagt |
21926677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 429 - 855
Target Start/End: Original strand, 10994163 - 10994585
Alignment:
| Q |
429 |
tcttctgcgacgggccgtctgagtctacagttcacttgttcctttcttgtccttccttcttcccggtgtggtatcaggtgtcttgatggatggctgggtt |
528 |
Q |
| |
|
||||||| || || |||||| ||||| |||| || |||||||||||||| ||||| || ||||||||||||||||||||||| | | |||||||||| |
|
|
| T |
10994163 |
tcttctgtgatggaccgtctaagtcttcagtgcatttgttcctttcttgcccttcttttttcccggtgtggtatcaggtgtc----tcgctggctgggtt |
10994258 |
T |
|
| Q |
529 |
gggagtttgtgatgcctctggggctagcccagcagtttcaggcttttacgggtttgggaggggggaggaaagttaggttatgtttgcttcttgtttggca |
628 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||||||| |||||| |||| || |||||||||| |||||||||| |||||||| |||||||||| |
|
|
| T |
10994259 |
gggagtttgtgatgcctcttgggctagcccaacagtttcaggcctttacgtgtttaggtggggggaggagagttaggttaggtttgctttttgtttggca |
10994358 |
T |
|
| Q |
629 |
tgatgttatttggaccatttgggtgtcccgaaacgaccttatctttactggtggcttcctccgagaggagccagtggtggacatagttaaaatcttagct |
728 |
Q |
| |
|
|| |||||| ||||||||||||| | |||| || |||||||||||| ||||||| | ||||| ||| ||||||||||||| | ||||||| |||||||| |
|
|
| T |
10994359 |
tgctgttatctggaccatttgggagacccgtaatgaccttatctttgctggtggtgttctccgtgagaagccagtggtggatagagttaaactcttagct |
10994458 |
T |
|
| Q |
729 |
taaaaatggttcctggctaagtgccctgctagtccctattctctctatgaatgggaggtgcaacccgtcctgtgtttgagtcggtagggttttatggtgg |
828 |
Q |
| |
|
| || ||||||||||||||||||||||||||| || |||||||||||| ||||||||||| |||||| ||||||||| ||||||||||||| |||||| |
|
|
| T |
10994459 |
tggaagtggttcctggctaagtgccctgctagttcccgttctctctatgagtgggaggtgcagcccgtcttgtgtttgaatcggtagggttttgtggtgg |
10994558 |
T |
|
| Q |
829 |
tgggttttcatggggctgcttgtgggg |
855 |
Q |
| |
|
||| | ||| | |||||||||| |||| |
|
|
| T |
10994559 |
tggctgttcctagggctgcttgcgggg |
10994585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 172; E-Value: 6e-92
Query Start/End: Original strand, 371 - 918
Target Start/End: Original strand, 29682375 - 29682918
Alignment:
| Q |
371 |
tcgcatagcaatctcatcaggcgcggtgtgccgcttcctgtcgatgggatgaggtgtctcttctgcgacgggccgtctgagtctacagttcacttgttcc |
470 |
Q |
| |
|
|||| |||||| ||||| ||| | ||||||| ||| || ||||||||| | ||||| ||||||| | ||||| | | |||| | || |||||||| |
|
|
| T |
29682375 |
tcgcgtagcaacctcattaggtgtggtgtgcagctctctatcgatgggagggggtgtgtcttctgtaatgggccatttaagtcatcggtgcacttgttta |
29682474 |
T |
|
| Q |
471 |
tttcttgtccttccttcttcccggtgtggtatcaggtgtcttgatggatggctgggttgggagtttgtgatgcctctggggctagcccagcagtttcagg |
570 |
Q |
| |
|
| ||||||||||| || |||| ||||||||||||||||| | | |||||||||||||||||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
29682475 |
tctcttgtccttcttttttcctagtgtggtatcaggtgtc----tcgttggctgggttgggagtttgtgatgccactggggctagcccagcagtttcatg |
29682570 |
T |
|
| Q |
571 |
cttttacgggtttgggaggggggaggaaagttaggttatgtttgcttcttgtttggcatgatgttatttggaccatttgggtgtcccgaaacgaccttat |
670 |
Q |
| |
|
| |||||||| |||||| ||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||| || |||||||| |
|
|
| T |
29682571 |
cctttacggggttggga-gggggaggagagttaggttaggtttgcttcttgtttggcatgttgttatttggaccatttgggcgtcccggaatgaccttat |
29682669 |
T |
|
| Q |
671 |
ctttactggtggcttcctccgagaggagccagtggtggacatagttaaaatcttagcttaaaaatggttcctggctaagtgccctgctagtccctattct |
770 |
Q |
| |
|
|||| ||||||| |||||||| |||| ||||||||| | ||||||| |||||||||| || ||||||| ||||||| |||||||| ||||| |||| |
|
|
| T |
29682670 |
ctttgctggtggtgctctccgagatgagctagtggtggatagagttaaactcttagcttagaagtggttccaggctaagcaccctgctaatccctgttct |
29682769 |
T |
|
| Q |
771 |
ctctatgaatgggaggtgcaacccgtcctgtgtttgagtcggtagggttttatggtggtgggttttcatggggctgcttgtggggctaggt-gggtcata |
869 |
Q |
| |
|
|||| ||| ||||||||||| || ||||||||||| | ||||||||||| ||||| | | ||| || |||||| ||||||| | ||| |||| || |
|
|
| T |
29682770 |
ctctttgagtgggaggtgcagcctatcctgtgtttgtattggtagggttttgcggtggctgttgttcctgcggctgcctgtggggttgggtggggttgta |
29682869 |
T |
|
| Q |
870 |
tccccccttccttcccggtgtggctttcaggcttttcttgttgttcttt |
918 |
Q |
| |
|
|| | ||||||||||| ||||||||| || ||||||||||||||||| |
|
|
| T |
29682870 |
tcttcacttccttcccgatgtggcttttggggttttcttgttgttcttt |
29682918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 571 - 763
Target Start/End: Complemental strand, 41074787 - 41074595
Alignment:
| Q |
571 |
cttttacgggtttgggaggggggaggaaagttaggttatgtttgcttcttgtttggcatgatgttatttggaccatttgggtgtcccgaaacgaccttat |
670 |
Q |
| |
|
|||||||| |||| || ||||||| ||||||||||||||||||||||||||||||||||| |||| | |||||||||| | |||| | || ||||| | |
|
|
| T |
41074787 |
cttttacgagtttaggtggggggaagaaagttaggttatgtttgcttcttgtttggcatgttgttgtgtggaccatttagacgtccaggaatgacctaag |
41074688 |
T |
|
| Q |
671 |
ctttactggtggcttcctccgagaggagccagtggtggacatagttaaaatcttagcttaaaaatggttcctggctaagtgccctgctagtcc |
763 |
Q |
| |
|
||| |||||||| | ||| | ||||| | |||||||||| || ||| ||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
41074687 |
tttttctggtggcgttctctgtgaggaaactgtggtggacaaagcgaaactcttagcttgaaagtggttcctggctaagtgccctgctagtcc |
41074595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 186; Significance: 1e-100; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 464 - 850
Target Start/End: Complemental strand, 1045700 - 1045319
Alignment:
| Q |
464 |
ttgttcctttcttgtccttccttcttcccggtgtggtatcaggtgtcttgatggatggctgggttgggagtttgtgatgcctctggggctagcccagcag |
563 |
Q |
| |
|
|||||||||||||| ||||| || |||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1045700 |
ttgttcctttcttgcccttcttttttcccggtgtggtatcaggtgtcttgctgg----ctgggttgggagtttgtgatgcctttggggctagcccagcag |
1045605 |
T |
|
| Q |
564 |
tttcaggcttttacgggtttgggaggggggaggaaagttaggttatgtttgcttcttgtttggcatgatgttatttggaccatttgggtgtcccgaaacg |
663 |
Q |
| |
|
|||||||| |||| |||||| || |||||||||| |||||||||||||||||||||||||||||||| |||||| | || |||||||| | ||| || | |
|
|
| T |
1045604 |
tttcaggcctttatgggtttaggtggggggaggagagttaggttatgtttgcttcttgtttggcatgttgttatctcgatcatttgggcgacccagaatg |
1045505 |
T |
|
| Q |
664 |
accttatctttactggtggcttcctccgagaggagccagtggtggacatagttaaaatcttagcttaaaaatggttcctggctaagtgccctgctagtcc |
763 |
Q |
| |
|
||||||||||| ||||||| | |||| ||||||||||||||||| | |||||| ||| ||||| || ||||||||||||||||||||||||||| | |
|
|
| T |
1045504 |
accttatctttgctggtggtgttctccatgaggagccagtggtggatagggttaaactctcagcttggaagtggttcctggctaagtgccctgctagttc |
1045405 |
T |
|
| Q |
764 |
ctattctctctatgaatgggaggtgcaacccgtcctgtgtttgagtcggtagggttttatggtggtgggttttcatggggctgcttg |
850 |
Q |
| |
|
| ||||||||||| | |||||||||| | |||||||||||||| ||||||||||||| || |||||||| ||| |||||||||||| |
|
|
| T |
1045404 |
ttgttctctctatg-aggggaggtgcagctcgtcctgtgtttgaatcggtagggttttgtgatggtgggtgttcctggggctgcttg |
1045319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 377 - 829
Target Start/End: Original strand, 41640503 - 41640951
Alignment:
| Q |
377 |
agcaatctcatcaggcgcggtgtgccgcttcctgtcgatgggatgaggtgtctcttctgcgacgggccgtctgagtctacagttcacttgttcctttctt |
476 |
Q |
| |
|
||||||||||| ||||| |||||| |||||||||| || ||| || ||||| | || || || ||| |||| |||||| | | ||| ||||||| |||| |
|
|
| T |
41640503 |
agcaatctcattaggcgtggtgtgtcgcttcctgtggacggggtggggtgtgttttttgtgatgggtcgtcggagtctgcgatgcacctgttcctctctt |
41640602 |
T |
|
| Q |
477 |
gtccttccttcttcccggtgtggtatcaggtgtcttgatggatggctgggttgggagtttgtgatgcctctggggctagcccagcagtttcaggctttta |
576 |
Q |
| |
|
|||||| || ||| |||||||||| ||||||||| | ||| | | ||| |||||| |||||||| ||||| |||||||| ||||| |||| |||| |
|
|
| T |
41640603 |
gtccttattttttctcggtgtggtaccaggtgtctaggtggttag----gttaggagttagtgatgcccctgggactagcccaacagttctaggccttta |
41640698 |
T |
|
| Q |
577 |
cgggtttgggaggggggaggaaagttaggttatgtttgcttcttgtttggcatgatgttatttggaccatttgggtgtcccgaaacgaccttatctttac |
676 |
Q |
| |
|
||||||| || || || |||| |||||||||| | ||| ||||| ||||||||| ||||||||| ||||||||||||| ||| ||||||||||||||| | |
|
|
| T |
41640699 |
cgggtttagggggtggtaggagagttaggttagggttgattcttatttggcatgctgttatttgaaccatttgggtgttccggaacgaccttatctttgc |
41640798 |
T |
|
| Q |
677 |
tggtggcttcctccgagaggagccagtggtggacatagttaaaatcttagcttaaaaatggttcctggctaagtgccctgctagtccctattctctctat |
776 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| ||||||| ||||| ||| || ||||| | ||||||||||||||||||| ||| |||| |||| |
|
|
| T |
41640799 |
tggtggcttactccgagaggagccagtggtggacagagttaaactcttaacttggaagtggtttcgggctaagtgccctgctagttcctgctctccctat |
41640898 |
T |
|
| Q |
777 |
gaatgggaggtgcaacccgtcctgtgtttgagtcggtagggttttatggtggt |
829 |
Q |
| |
|
|| ||||||||||| ||||||||||||||| | |||||||||| ||||||| |
|
|
| T |
41640899 |
gagtgggaggtgcagcccgtcctgtgtttggaccagtagggttttgtggtggt |
41640951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 378 - 945
Target Start/End: Original strand, 4777719 - 4778275
Alignment:
| Q |
378 |
gcaatctcatcaggcgcggtgtgccgcttcctgtcgatgggatgaggtgtctcttctgcgacgggccgtctgagtctacagttcacttgttcctttcttg |
477 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||| | |||| || ||||| ||||||||| | ||||| |||||| | || ||| ||||| |||| || |
|
|
| T |
4777719 |
gcaatctcattaggcgcggtgtgcctcttcctgtaggtggggtggggtgtgccttctgcgattgtccgtccgagtctgcggtgcacctgttcatttcctg |
4777818 |
T |
|
| Q |
478 |
tccttccttcttcccggtgtggtatcaggtgtcttgatggatggctgggttgggagtttgtgatgcctctggggctagcccagcagtttcaggc-tttta |
576 |
Q |
| |
|
||||| ||||| ||||| ||||| ||||| ||| | | ||| ||||||||||||| ||| ||||| ||||||| ||||||| |||||||| |||| |
|
|
| T |
4777819 |
tccttatttctttccggtttggtaccaggtttct--acg--tggttgggttgggagttggtgttgcctatggggctcccccagcaatttcaggcgttttc |
4777914 |
T |
|
| Q |
577 |
cgggtttgggagggggg-aggaaagttaggttatgtttgcttcttgtttggcatgatgttatttggaccatttgggtgtcccgaaacgaccttatcttta |
675 |
Q |
| |
|
|||||| ||| |||||| | ||||||||||||| ||||||||||||||||||||| |||||||||| | |||||| || |||| || ||| |
|
|
| T |
4777915 |
cgggttagggggggggggaagaaagttaggttaggtttgcttcttgtttggcatgctgttatttgggc---------gtcccggaatgaccggatttttg |
4778005 |
T |
|
| Q |
676 |
ctggtggcttcctccgagaggagccagtggtggacatagttaaaatcttagcttaaaaatggttcctggctaagtgccctgctagtccctattctctcta |
775 |
Q |
| |
|
||||||| || |||| |||||||| |||||||| | ||||||| |||||| || || ||||||| ||||| ||||||||||||||||| |||||||| |
|
|
| T |
4778006 |
ctggtggtttactccatgaggagcctgtggtggatagagttaaactcttagtttggaagtggttccaggctaggtgccctgctagtccctgctctctcta |
4778105 |
T |
|
| Q |
776 |
tgaatgggaggtgcaacccgtcctgtgtttgagtcggtagggttttatggtggtgggttttcatggggctgcttgtggggctaggt-gggtcatatcccc |
874 |
Q |
| |
|
||| ||||||||||| |||||||||||||||| ||||||||||||| ||||||| | || | ||||| ||| ||| ||| | ||| |||| |||| || |
|
|
| T |
4778106 |
tgagtgggaggtgcagcccgtcctgtgtttgaatcggtagggtttt-tggtggt-tgcttgcctggggttgcctgttgggtttggtggggttgtatctcc |
4778203 |
T |
|
| Q |
875 |
ccttccttcccggtgtggctttcagg-cttttcttgttgttctttatgtttgcaggtgtttactaggcttgc |
945 |
Q |
| |
|
|||||||| |||||||| || || ||||||||||||||||| || |||||||||||| || ||||||| |
|
|
| T |
4778204 |
ccttcctttatggtgtggccttggggttttttcttgttgttctttgtgcttgcaggtgtttgctgggcttgc |
4778275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 616 - 761
Target Start/End: Original strand, 34213062 - 34213207
Alignment:
| Q |
616 |
ttcttgtttggcatgatgttatttggaccatttgggtgtcccgaaacgaccttatctttactggtggcttcctccgagaggagccagtggtggacatagt |
715 |
Q |
| |
|
|||| ||||| ||||||||||| |||||||||||| ||||| |||||||||||| || |||||||| ||||| ||||| || || ||||| | ||| |
|
|
| T |
34213062 |
ttctagtttgccatgatgttatatggaccatttggacgtcccaaaacgaccttattttctctggtggcgctctccgtgaggaacctgttgtggatagagt |
34213161 |
T |
|
| Q |
716 |
taaaatcttagcttaaaaatggttcctggctaagtgccctgctagt |
761 |
Q |
| |
|
||| ||||||||| || |||||| |||||||||||| ||||||| |
|
|
| T |
34213162 |
gaaactcttagcttggaagtggttcatggctaagtgccatgctagt |
34213207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 700 - 821
Target Start/End: Complemental strand, 2833396 - 2833271
Alignment:
| Q |
700 |
cagtggtggacatagttaaaatcttagcttaaaaatggttcctggctaagtgccctgctag----tccctattctctctatgaatgggaggtgcaacccg |
795 |
Q |
| |
|
||||||| || | ||| ||| ||||||||| || |||||| ||||||||||||||||||| | ||| ||||||||||| ||||||||||| |||| |
|
|
| T |
2833396 |
cagtggtagatagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagctagttcctgctctctctatgagtgggaggtgcagcccg |
2833297 |
T |
|
| Q |
796 |
tcctgtgtttgagtcggtagggtttt |
821 |
Q |
| |
|
|||| |||| || || |||||||||| |
|
|
| T |
2833296 |
tcctatgttggaatcagtagggtttt |
2833271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 558 - 757
Target Start/End: Complemental strand, 26982269 - 26982070
Alignment:
| Q |
558 |
cagcagtttcaggcttttacgggtttgggaggggggaggaaagttaggttatgtttgcttcttgtttggcatgatgttatttggaccatttgggtgtccc |
657 |
Q |
| |
|
|||||||| |||| || |||||| | ||| |||||| || ||||||| || |||||||||| |||||||||| ||| |||| |||| || | || |
|
|
| T |
26982269 |
cagcagttctaggccttcacgggtcttggaagggggaagagagttaggataggtttgcttctggtttggcatgctgtcatttagaccgttctgacttcta |
26982170 |
T |
|
| Q |
658 |
gaaacgaccttatctttactggtggcttcctccgagaggagccagtggtggacatagttaaaatcttagcttaaaaatggttcctggctaagtgccctgc |
757 |
Q |
| |
|
|||| ||||||| || |||||||| ||| || |||||||| |||||||| | ||| ||| ||||||||| || |||||| |||||||||||||||| |
|
|
| T |
26982169 |
gaaataaccttattttctctggtggcacccttcgtgaggagcctgtggtggatagagtaaaactcttagcttggaagtggttcttggctaagtgccctgc |
26982070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 607 - 646
Target Start/End: Complemental strand, 1762181 - 1762142
Alignment:
| Q |
607 |
tatgtttgcttcttgtttggcatgatgttatttggaccat |
646 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
1762181 |
tatgtttacttcttgtttggcatgttgttatttggaccat |
1762142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 141; Significance: 2e-73; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 391 - 829
Target Start/End: Complemental strand, 36650831 - 36650395
Alignment:
| Q |
391 |
gcgcggtgtgccgcttcctgtcgatgggatgaggtgtctcttctgcgacgggccgtctgagtctacagttcacttgttcctttcttgtccttccttcttc |
490 |
Q |
| |
|
||||| ||||| ||| |||||||||||| || ||||| | |||||||| | || |||||||| | ||| ||||||| ||||||||||| ||||| |
|
|
| T |
36650831 |
gcgcgatgtgctgctccctgtcgatggggtggggtgtgttttctgcgatagttcgcctgagtctgcgacgcacctgttcctctcttgtccttctttcttt |
36650732 |
T |
|
| Q |
491 |
ccggtgtggtatcaggtgtcttgatggatggctgggttgggagtttgtgatgcctctggggctagcccagcagtttcaggcttttacgggtttgggaggg |
590 |
Q |
| |
|
|| |||||||| ||||||||| | ||| | | ||||| |||||||||||||||||||||||||||||||||| || || || ||||| || |||||| |
|
|
| T |
36650731 |
ccagtgtggtaccaggtgtctaggtggttag----gttggaagtttgtgatgcctctggggctagcccagcagttccaagccttcacgggcttaggaggg |
36650636 |
T |
|
| Q |
591 |
gggaggaaagttaggttatgtttgcttcttgtttggcatgatgttatttggaccatttgggtgtcccgaaacgaccttatctttactggtggcttcctcc |
690 |
Q |
| |
|
|| |||| |||||||||| ||||||| ||||||||||||| |||||||||||||||||| | || ||| ||||||||||||||| | |||||||| |||| |
|
|
| T |
36650635 |
ggtaggagagttaggttaggtttgctccttgtttggcatgctgttatttggaccatttgagcgttccggaacgaccttatctttgcgggtggcttactcc |
36650536 |
T |
|
| Q |
691 |
gagaggagccagtggtggacatagttaaaatcttagcttaaaaatggttcctggctaagtgccctgctagtccct--attctctctatgaatgggaggtg |
788 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||| | ||||||| ||||||||| | ||||||| ||| ||||||| ||| |||||||| |
|
|
| T |
36650535 |
gagaggagccagtggtggacagagttaaactcttagcttgggagtggttccgggctaagtgtcttgctagttcctgctctctctctttgagtgggaggtt |
36650436 |
T |
|
| Q |
789 |
caacccgtcctgtgtttgagtcggtagggttttatggtggt |
829 |
Q |
| |
|
|||||| || ||||| ||| ||||||||| || ||||||| |
|
|
| T |
36650435 |
caacccatcttgtgtatgaaccggtagggtgttgtggtggt |
36650395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 663 - 918
Target Start/End: Complemental strand, 2074936 - 2074680
Alignment:
| Q |
663 |
gaccttatctttactggtggcttcctccgagaggagccagtggtggacatagttaaaatcttagcttaaaaatggttcctggctaagtgccctgctagtc |
762 |
Q |
| |
|
|||||||||||| ||||||| | ||||||||||||||||||||||| ||||||||| |||||| || || | ||||| ||||||||||||||||||| |
|
|
| T |
2074936 |
gaccttatctttgctggtggtattctccgagaggagccagtggtggatatagttaaactcttagttttgaagttgttccaggctaagtgccctgctagtt |
2074837 |
T |
|
| Q |
763 |
cctattctctctatgaatgggaggtgcaacccgtcctgtgtttgagtcggtagggttttatggtggtgggttttcatggggctgcttgtggggctaggtg |
862 |
Q |
| |
|
||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||| ||| ||| ||||||||| ||||||| | | || |
|
|
| T |
2074836 |
cctgttctctctatgagtgggaggtgcaacccgtcctgtgtttgtatcggtagggttttgcagtggttggtgttcctggggctgcctgtggggttggatg |
2074737 |
T |
|
| Q |
863 |
-ggtcatatccccccttccttcccggtgtggctttcaggcttttcttgttgttcttt |
918 |
Q |
| |
|
||| |||| ||||||||||||||||||||||||| | |||||||||||| |||| |
|
|
| T |
2074736 |
cggttgtatctccccttccttcccggtgtggctttcgaggttttcttgttgtccttt |
2074680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 694 - 918
Target Start/End: Original strand, 26000091 - 26000315
Alignment:
| Q |
694 |
aggagccagtggtggacatagttaaaatcttagcttaaaaatggttcctggctaagtgccctgctagtccctattctctctatgaatgggaggtgcaacc |
793 |
Q |
| |
|
|||||||||||||||| ||||||| | ||||||| ||| |||||| | |||||| || || ||||| || |||||||||||| |||||||||||||| |
|
|
| T |
26000091 |
aggagccagtggtggatggagttaaacttttagcttgaaagtggttctagactaagttccatgttagtctctgttctctctatgagtgggaggtgcaacc |
26000190 |
T |
|
| Q |
794 |
cgtcctgtgtttgagtcggtagggttttatggtggtgggttttcatggggctgcttgtggggctaggt-gggtcatatccccccttccttcccggtgtgg |
892 |
Q |
| |
|
|| |||||||| | | ||||||||| |||||| ||| ||| ||||| ||||||||||| | ||| |||| ||| | ||||||||||||||||||| |
|
|
| T |
26000191 |
tatcatgtgtttgtattgatagggttttgcggtggttggtgttcctggggttgcttgtggggttgggtggggttgtat-cacccttccttcccggtgtgg |
26000289 |
T |
|
| Q |
893 |
ctttcaggcttttcttgttgttcttt |
918 |
Q |
| |
|
|||| || ||||||||||||||||| |
|
|
| T |
26000290 |
cttttggggttttcttgttgttcttt |
26000315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 599 - 761
Target Start/End: Original strand, 24604734 - 24604896
Alignment:
| Q |
599 |
agttaggttatgtttgcttcttgtttggcatgatgttatttggaccatttgggtgtcccgaaacgaccttatctttactggtggcttcctccgagaggag |
698 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| ||||| ||||||||| ||| | || ||||| || ||| ||||||| ||||||||||||| |
|
|
| T |
24604734 |
agttaggttaggtttgcttcttgtttggcatgatgtcatttgtaccatttggacgtctaggaatgacctgatttttgctggtggtaccctccgagaggag |
24604833 |
T |
|
| Q |
699 |
ccagtggtggacatagttaaaatcttagcttaaaaatggttcctggctaagtgccctgctagt |
761 |
Q |
| |
|
| |||||||| | || ||| |||||| || ||| |||||| |||||||||| ||||||||| |
|
|
| T |
24604834 |
ctggtggtggatagagcgaaactcttagattgaaagtggttcttggctaagtggcctgctagt |
24604896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 573 - 804
Target Start/End: Original strand, 41926891 - 41927122
Alignment:
| Q |
573 |
tttacgggtttgggaggggggaggaaagttaggttatgtttgcttcttgtttggcatgatgttatttggaccatttgggtgtcccgaaacgaccttatct |
672 |
Q |
| |
|
|||||||| || || || ||||||| || ||||||| || ||||||| |||||||||| ||||||||||||||||||| || || || || ||||| | |
|
|
| T |
41926891 |
tttacgggcttaggtggtgggaggagagctaggttaggtctgcttctggtttggcatgctgttatttggaccatttggacttctcggaatgatcttattt |
41926990 |
T |
|
| Q |
673 |
ttactggtggcttcctccgagaggagccagtggtggacatagttaaaatcttagcttaaaaatggttcctggctaagtgccctgctagtccctattctct |
772 |
Q |
| |
|
|| ||||||| || ||||||||||| |||||||| | || || ||||||||| || ||||||||||||||||||| ||| | | ||| | | | |
|
|
| T |
41926991 |
tttctggtggtgctcttcgagaggagcctgtggtggatagagcgaatctcttagcttggaagtggttcctggctaagtgccgtgcaaattcctgcttttt |
41927090 |
T |
|
| Q |
773 |
ctatgaatgggaggtgcaacccgtcctgtgtt |
804 |
Q |
| |
|
|||||| |||||| |||| ||| ||||||||| |
|
|
| T |
41927091 |
ctatgagtgggagatgcaccccttcctgtgtt |
41927122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 523 - 802
Target Start/End: Complemental strand, 42241501 - 42241223
Alignment:
| Q |
523 |
tgggttgggagtttgtgatgcctctggggctagcccagcagtttcaggcttttacgggtttgggaggggggaggaaagttaggttatgtttgcttcttgt |
622 |
Q |
| |
|
|||| |||||||||||| ||| |||| |||||||||||||||| | | || ||||| || || ||||||| || ||||| || ||||||| |||| |
|
|
| T |
42241501 |
tggggtgggagtttgtgtctcctatgggtctagcccagcagtttccgtccttcacgggattaggtggggggaagagcgttagactaggtttgctcattgt |
42241402 |
T |
|
| Q |
623 |
ttggcatgatgttatttggaccatttgggtgtcccgaaacgaccttatctttactggtggcttcctccgagaggagccagtggtggacatagttaaaatc |
722 |
Q |
| |
|
||| |||| ||||||||| ||||| ||| ||| ||||||||||||| ||| |||||||| |||||| |||||||| ||||||| | || ||| || |
|
|
| T |
42241401 |
ttgacatgctgttatttgaaccatctggacatccagaaacgaccttat-ttttctggtggcgccctccgtgaggagcctttggtggataaagcgaaactc |
42241303 |
T |
|
| Q |
723 |
ttagcttaaaaatggttcctggctaagtgccctgctagtccctattctctctatgaatgggaggtgcaacccgtcctgtg |
802 |
Q |
| |
|
||||||| || ||||||||||| ||| || || ||||| ||| || | ||| ||||||||||||||||||||||| |
|
|
| T |
42241302 |
ttagcttggaagtggttcctggcgaagcgctctactagttcctgcacttaccttgagtgggaggtgcaacccgtcctgtg |
42241223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 721 - 829
Target Start/End: Original strand, 42032752 - 42032860
Alignment:
| Q |
721 |
tcttagcttaaaaatggttcctggctaagtgccctgctagtccctattctctctatgaatgggaggtgcaacccgtcctgtgtttgagtcggtagggttt |
820 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||| | ||| || | ||||| |||||||||||||||||||| |||| | ||||||||| | |
|
|
| T |
42032752 |
tcttagcttggaagtggttcctggctaagtgccctgctacttcctgctccttttatgagtgggaggtgcaacccgtcctttgttggcaacggtagggtgt |
42032851 |
T |
|
| Q |
821 |
tatggtggt |
829 |
Q |
| |
|
| ||||||| |
|
|
| T |
42032852 |
tgtggtggt |
42032860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 528 - 683
Target Start/End: Complemental strand, 4040588 - 4040433
Alignment:
| Q |
528 |
tgggagtttgtgatgcctctggggctagcccagcagtttcaggcttttacgggtttgggaggggggaggaaagttaggttatgtttgcttcttgtttggc |
627 |
Q |
| |
|
|||||||||||| ||| |||| |||||||| ||||||| | || ||||| || || ||||||| || |||||| || ||||||| ||||||||| |
|
|
| T |
4040588 |
tgggagtttgtgtctcctatgggtctagcccaacagtttctgttcttcacgggattaggtggggggaagagtgttaggctaggtttgctcattgtttggc |
4040489 |
T |
|
| Q |
628 |
atgatgttatttggaccatttgggtgtcccgaaacgaccttatctttactggtggc |
683 |
Q |
| |
|
||| |||||| |||||||| ||| ||| ||||||||||||| ||| |||||||| |
|
|
| T |
4040488 |
atgttgttatctggaccatctggacatccagaaacgaccttattttttctggtggc |
4040433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 688 - 729
Target Start/End: Complemental strand, 31146031 - 31145990
Alignment:
| Q |
688 |
tccgagaggagccagtggtggacatagttaaaatcttagctt |
729 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| || |||||| |
|
|
| T |
31146031 |
tccgagaggagccagtggtggacagagttaaactcatagctt |
31145990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 129; Significance: 3e-66; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 461 - 818
Target Start/End: Complemental strand, 48309954 - 48309601
Alignment:
| Q |
461 |
cacttgttcctttcttgtccttccttcttcccggtgtggtatcaggtgtcttgatggatggctgggttgggagtttgtgatgcctctggggctagcccag |
560 |
Q |
| |
|
||||||||||||||||||||||| ||||| | |||||||| ||||||||| | ||| ||| | ||||| ||||| |||||||||||||| || ||| |
|
|
| T |
48309954 |
cacttgttcctttcttgtccttcattctttactgtgtggtaccaggtgtctaggtggttgg----gctgggattttgtcatgcctctggggcttgctcag |
48309859 |
T |
|
| Q |
561 |
cagtttcaggcttttacgggtttgggaggggggaggaaagttaggttatgtttgcttcttgtttggcatgatgttatttggaccatttgggtgtcccgaa |
660 |
Q |
| |
|
|||||||||| ||||| || || |||||||||| || |||||||||| |||||||||||||||||||| |||||||||||||||||| | |||| | |
|
|
| T |
48309858 |
cagtttcaggtgtttacagggttaggaggggggaagagagttaggttaggtttgcttcttgtttggcatattgttatttggaccatttgagcatcccaga |
48309759 |
T |
|
| Q |
661 |
acgaccttatctttactggtggcttcctccgagaggagccagtggtggacatagttaaaatcttagcttaaaaatggttcctggctaagtgccctgctag |
760 |
Q |
| |
|
| |||||||||||| |||||||||| ||||||||||||||||||||||| | ||| ||| ||||||||| || | ||||| |||||||| |||||||| |
|
|
| T |
48309758 |
atgaccttatctttgctggtggcttactccgagaggagccagtggtggatagagtgaaactcttagcttggaagtcgttccgggctaagtttcctgctag |
48309659 |
T |
|
| Q |
761 |
tccctattctctctatgaatgggaggtgcaacccgtcctgtgtttgagtcggtagggt |
818 |
Q |
| |
|
| ||| |||||||||||| ||||| | || |||| |||||||| || ||||||||| |
|
|
| T |
48309658 |
ttcctgttctctctatgagtgggaaatccatcccgccctgtgttggaaccggtagggt |
48309601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 523 - 804
Target Start/End: Complemental strand, 50655347 - 50655067
Alignment:
| Q |
523 |
tgggttgggagtttgtgatgcctctggggctagcccagcagtttcaggcttttacgggtttgggaggggggaggaaagttaggttatgtttgcttcttgt |
622 |
Q |
| |
|
||||||||||||||||||| || | || ||||| || ||||| | |||||||||| || |||||||| || | |||||||||| ||||||| || || |
|
|
| T |
50655347 |
tgggttgggagtttgtgattccccaaggtctagcacaacagttcatgtcttttacgggcttaggagggggaag-agagttaggttaggtttgctcctggt |
50655249 |
T |
|
| Q |
623 |
ttggcatgatgttatttggaccatttgggtgtcccgaaacgaccttatctttactggtggcttcctccgagaggagccagtggtggacatagttaaaatc |
722 |
Q |
| |
|
|||||||| ||||||||||||||| ||| |||||| || |||||||||||| |||||||| |||| |||||||| | ||| |||| | |||| || |
|
|
| T |
50655248 |
ttggcatgctgttatttggaccatctggacgtcccgtaatgaccttatcttttctggtggcgccctcagagaggagtctgtgatggatcaggctaaactc |
50655149 |
T |
|
| Q |
723 |
ttagcttaaaaatggttcctggctaagtgccctgctagtccctattctctctatgaatgggaggtgcaacccgtcctgtgtt |
804 |
Q |
| |
|
||||||| || ||||||||||||||||| ||||||||| | | | | || |||| |||||||||||||| ||||| |||| |
|
|
| T |
50655148 |
ttagcttggaagtggttcctggctaagtgtcctgctagttcttgctttttccatgagtgggaggtgcaacctgtcctttgtt |
50655067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 571 - 843
Target Start/End: Complemental strand, 45068350 - 45068079
Alignment:
| Q |
571 |
cttttacgggtttgggaggggggaggaaagttaggttatgtttgcttcttgtttggcatgatgttatttggaccatttgggtgtcccgaaacgaccttat |
670 |
Q |
| |
|
||||||||||||| || ||||||| || ||| |||||| |||||||||||||||| |||| | ||||||||| ||| ||| ||||| ||||||||| | |
|
|
| T |
45068350 |
cttttacgggtttaggtggggggaagagagtgaggttaggtttgcttcttgtttgacatgtttttatttggaacatctggacgtccctgaacgacctttt |
45068251 |
T |
|
| Q |
671 |
ctttactggtggcttcctccgagaggagccagtggtggacatagttaaaatcttagcttaaaaatggttcctggctaagtgccctgctagtccctattct |
770 |
Q |
| |
|
||| || || || || | |||||||| || ||||| | || |||| ||||||||| || |||||||||||||||||||||| ||| |||| || |
|
|
| T |
45068250 |
gttttctagttgcactcttcatgaggagcctgtagtggatagagctaaactcttagcttggaagtggttcctggctaagtgccctggcagttcctacact |
45068151 |
T |
|
| Q |
771 |
ctctatgaatgggaggtgcaacccgtcctgtgtttgagtcggtagggttttatggtggtgggttttcatgggg |
843 |
Q |
| |
|
|||| ||||||||||||||||||| |||| | || |||||||||| ||||||| ||||||||||||| |
|
|
| T |
45068150 |
tatcatgagggggaggtgcaacccgtcctttgttggtatcagtagggttttgtggtggt-ggttttcatgggg |
45068079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 780 - 931
Target Start/End: Complemental strand, 43822423 - 43822272
Alignment:
| Q |
780 |
tgggaggtgcaacccgtcctgtgtttgagtcggtagggttttatggtggtgggttttcatggggctgcttgtggggctaggt-gggtcatatcccccctt |
878 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||| ||||| |||| || ||| ||| |||| ||||||| |||| | ||| ||||| |||| |||||| |
|
|
| T |
43822423 |
tgggaggtgcagcccgtcctgtgcttgagtcggtagagttttgtggtagt-ggtattcttgggactgcttgcggggttgggtggggtcgtatctcccctt |
43822325 |
T |
|
| Q |
879 |
ccttcccggtgtggctttcaggcttttcttgttgttctttatgtttgcaggtg |
931 |
Q |
| |
|
| ||||| ||||||| || || ||||||||||||||||| || ||||||||| |
|
|
| T |
43822324 |
gcatcccgttgtggctgtccggtttttcttgttgttctttgtgcttgcaggtg |
43822272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 621 - 756
Target Start/End: Complemental strand, 30251573 - 30251438
Alignment:
| Q |
621 |
gtttggcatgatgttatttggaccatttgggtgtcccgaaacgaccttatctttactggtggcttcctccgagaggagccagtggtggacatagttaaaa |
720 |
Q |
| |
|
||||| |||| ||||||||||||||||||| |||| ||||||||||||| || ||| ||| ||||| |||||| | |||||||| | ||| ||| |
|
|
| T |
30251573 |
gtttgacatgctgttatttggaccatttggacgtcctgaaacgaccttattttctctgttggggctctccgtgaggagtctgtggtggatagagtgaaac |
30251474 |
T |
|
| Q |
721 |
tcttagcttaaaaatggttcctggctaagtgccctg |
756 |
Q |
| |
|
|||| |||| ||| |||||||||||||||||||||| |
|
|
| T |
30251473 |
tcttggcttgaaagtggttcctggctaagtgccctg |
30251438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 693 - 802
Target Start/End: Complemental strand, 24065203 - 24065094
Alignment:
| Q |
693 |
gaggagccagtggtggacatagttaaaatcttagcttaaaaatggttcctggctaagtgccctgctagtccctattctctctatgaatgggaggtgcaac |
792 |
Q |
| |
|
|||||||| |||||||| | ||| ||| ||||| | | || |||||| ||||||||| |||||||||| ||| || | |||||||||||||| |||| |
|
|
| T |
24065203 |
gaggagcctgtggtggatagagtgaaactcttaacctggaagtggttcatggctaagtaccctgctagttcctgttgttattatgaatgggaggtacaac |
24065104 |
T |
|
| Q |
793 |
ccgtcctgtg |
802 |
Q |
| |
|
|||||||||| |
|
|
| T |
24065103 |
ccgtcctgtg |
24065094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 523 - 646
Target Start/End: Original strand, 4866600 - 4866723
Alignment:
| Q |
523 |
tgggttgggagtttgtgatgcctctggggctagcccagcagtttcaggcttttacgggtttgggaggggggaggaaagttaggttatgtttgcttcttgt |
622 |
Q |
| |
|
|||||||||||||||| || || || || || ||||| || ||| | ||||||||||||| || |||||| | |||||||||| ||||| ||||||| |
|
|
| T |
4866600 |
tgggttgggagtttgtcatcccccttggtcttgcccaacaatttttgtcttttacgggtttaggtagggggaaaagagttaggttaggtttggttcttgt |
4866699 |
T |
|
| Q |
623 |
ttggcatgatgttatttggaccat |
646 |
Q |
| |
|
||||||| |||| | |||||||| |
|
|
| T |
4866700 |
ttggcattctgttgtgtggaccat |
4866723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 572 - 679
Target Start/End: Complemental strand, 12843155 - 12843048
Alignment:
| Q |
572 |
ttttacgggtttgggaggggggaggaaagttaggttatgtttgcttcttgtttggcatgatgttatttggaccatttgggtgtcccgaaacgaccttatc |
671 |
Q |
| |
|
||||| ||| || |||||||| | || ||||||| || |||||||||| ||||||||| |||||| |||||||||||| ||||| || |||||||| |
|
|
| T |
12843155 |
ttttatgggcttaggagggggaaagagagttaggataggtttgcttctggtttggcattttgttatctggaccatttggacttcccggaatgaccttatt |
12843056 |
T |
|
| Q |
672 |
tttactgg |
679 |
Q |
| |
|
||| |||| |
|
|
| T |
12843055 |
ttttctgg |
12843048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 2e-36; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 743 - 944
Target Start/End: Original strand, 33672896 - 33673093
Alignment:
| Q |
743 |
ggctaagtgccctgctagtccctattctctctatgaatgggaggtgcaacccgtcctgtgtttgagtcggtagggttttatggtggtgggttttcatggg |
842 |
Q |
| |
|
||||||||||||||||||| | |||||||||| ||||||||||||||||||| |||||||||||||||||| ||| ||||||| || |||| |||| |
|
|
| T |
33672896 |
ggctaagtgccctgctagt-----tcctctctatgagtgggaggtgcaacccgtcccgtgtttgagtcggtaggggtttgtggtggttggatttcctggg |
33672990 |
T |
|
| Q |
843 |
gctgcttgtggggctaggt-gggtcatatccccccttccttcccggtgtggctttcaggcttttcttgttgttctttatgtttgcaggtgtttactaggc |
941 |
Q |
| |
|
| ||| | ||||| | | | |||| |||||||||||||||| |||||||||||| || ||||||||||||||||| || |||||||||||| || ||| |
|
|
| T |
33672991 |
gttgcctctggggttggttggggtagtatccccccttccttctcggtgtggcttttgggtttttcttgttgttctttgtgcttgcaggtgtttgctgggc |
33673090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 553 - 698
Target Start/End: Complemental strand, 16154684 - 16154539
Alignment:
| Q |
553 |
tagcccagcagtttcaggcttttacgggtttgggaggggggaggaaagttaggttatgtttgcttcttgtttggcatgatgttatttggaccatttgggt |
652 |
Q |
| |
|
||||||||| ||||||| |||||||| || ||| |||||| || |||||||||| ||||||||||| ||||||||| | ||||||||||||||||| |
|
|
| T |
16154684 |
tagcccagctctttcaggtgtttacggggttaggaagggggaagagagttaggttaggtttgcttcttatttggcatgctattatttggaccatttggac |
16154585 |
T |
|
| Q |
653 |
gtcccgaaacgaccttatctttactggtggcttcctccgagaggag |
698 |
Q |
| |
|
||| ||| |||||||||||| |||||||||| |||||||||||| |
|
|
| T |
16154584 |
gtcttaaaatgaccttatctttgctggtggcttactccgagaggag |
16154539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 582 - 760
Target Start/End: Original strand, 41650405 - 41650583
Alignment:
| Q |
582 |
ttgggaggggggaggaaagttaggttatgtttgcttcttgtttggcatgatgttatttggaccatttgggtgtcccgaaacgaccttatctttactggtg |
681 |
Q |
| |
|
||||||||||| | | |||||||||| || ||||||| |||||||||| ||| ||||||||||||||| ||||| ||| ||| | || ||| |||||| |
|
|
| T |
41650405 |
ttgggagggggaaatagagttaggttaggtctgcttctggtttggcatgctgtcatttggaccatttggacgtcccaaaatgacttgattttttctggtg |
41650504 |
T |
|
| Q |
682 |
gcttcctccgagaggagccagtggtggacatagttaaaatcttagcttaaaaatggttcctggctaagtgccctgctag |
760 |
Q |
| |
|
|| || |||| | | |||||||| | || ||| ||||||||| || |||||||||||||||||| ||||||| |
|
|
| T |
41650505 |
gcgctcttggagaagtgtatgtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgctctgctag |
41650583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 5e-31; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 660 - 829
Target Start/End: Complemental strand, 9755801 - 9755632
Alignment:
| Q |
660 |
aacgaccttatctttactggtggcttcctccgagaggagccagtggtggacatagttaaaatcttagcttaaaaatggttcctggctaagtgccctgcta |
759 |
Q |
| |
|
||||| ||||||||| ||||||||| ||| |||||||| |||||||||||| ||| ||| |||||| || || ||||| | ||||||||||||||||| |
|
|
| T |
9755801 |
aacgagcttatctttgatggtggcttactctgagaggaggcagtggtggacaaagtgaaactcttagtttggaagtggtttcgggctaagtgccctgcta |
9755702 |
T |
|
| Q |
760 |
gtccctattctctctatgaatgggaggtgcaacccgtcctgtgtttgagtcggtagggttttatggtggt |
829 |
Q |
| |
|
|| | | ||||||| ||||||| |||||||| |||||||||||||||| ||| ||||||| | ||||||| |
|
|
| T |
9755701 |
gttcatgttctctccatgaatgagaggtgcagcccgtcctgtgtttgactcgttagggttatgtggtggt |
9755632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 571 - 761
Target Start/End: Original strand, 51861 - 52053
Alignment:
| Q |
571 |
cttttacgggtttgggaggggggaggaaagttaggttatgtttgcttcttgtttggcat--gatgttatttggaccatttgggtgtcccgaaacgacctt |
668 |
Q |
| |
|
|||||||||| || |||||||||| || |||||||||| || |||| || |||||||| | ||||||||||||||| ||| |||||| || |||||| |
|
|
| T |
51861 |
cttttacgggcttaggaggggggaagagagttaggttaagtctgctcctgatttggcatatgctgttatttggaccatctggacgtcccgtaatgacctt |
51960 |
T |
|
| Q |
669 |
atctttactggtggcttcctccgagaggagccagtggtggacatagttaaaatcttagcttaaaaatggttcctggctaagtgccctgctagt |
761 |
Q |
| |
|
|||||| ||||||||| |||| |||||||||| ||||||| || |||| ||||||||| || ||||||||||||||||| | ||||||| |
|
|
| T |
51961 |
atcttttctggtggctccctcagagaggagcctatggtggatcgagctaaactcttagcttggaagtggttcctggctaagtgtcttgctagt |
52053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 599 - 683
Target Start/End: Complemental strand, 9557566 - 9557482
Alignment:
| Q |
599 |
agttaggttatgtttgcttcttgtttggcatgatgttatttggaccatttgggtgtcccgaaacgaccttatctttactggtggc |
683 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||| ||||||||||||||| | | ||||||||| |||||||| | | |||||||| |
|
|
| T |
9557566 |
agttaggttatgtttggttcttgttttgcatgttgttatttggaccatcttgacgtcccgaaatgaccttatttctgctggtggc |
9557482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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