View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5229-Insertion-10 (Length: 629)
Name: NF5229-Insertion-10
Description: NF5229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5229-Insertion-10 |
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Alignment Details
Target: chr3 (Bit Score: 581; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 8 - 624
Target Start/End: Complemental strand, 40676257 - 40675641
Alignment:
| Q |
8 |
gaaataatttctcaatttttctaattggcatatacattttagaaattgtaaaatgtcacgcaaaatgtccctcacttagcttctgttattaagagggtgt |
107 |
Q |
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| T |
40676257 |
gaaataatttctcaatttttcgaattggcatatacattttagaaattgtaaaatgtcacgcaaaatgtccctcacttagcttttgttattaagagggtgt |
40676158 |
T |
|
| Q |
108 |
gacgtgtcatgttgcacatcgatcacacataatgttatcagttcactatcaactaatttgactataaaatttaggttatatcaatgacaaaatagtgact |
207 |
Q |
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|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
40676157 |
gacgtgtcatattgcacatcgatctcacataatgttatcagttcactatcaactaatttgactataaaatttaggttatatcaatgacaaattagtgact |
40676058 |
T |
|
| Q |
208 |
agttattggaaaattatacctctaatgttataaataaattaatagatggactgttttgaatgacatttacaatttcaagatgtatttaccaattcacaaa |
307 |
Q |
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| T |
40676057 |
agttattggcaaattatacctctaatgttataaataaattaatagatggactgttttgaatgacatttacaatttcaagatgtatttaccaattcacaaa |
40675958 |
T |
|
| Q |
308 |
agtaagacactatttcaaccaatgcttacatattctagaactaatttgcatatttaatcatagctatacacaacaaattctaaatcgtaactaacatata |
407 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40675957 |
agtaagacactatttcaaccaatgcttacaaattctagaactaatttgcatatttaatcatagctatacacaacaaattctaaatcgtaactaacatata |
40675858 |
T |
|
| Q |
408 |
ttctttcaacgatttttcccagtaactaacctgaggcaaaggaagggtggcaagaagatcaataatgaaatcatgcctgatatatcggcgggcgatctga |
507 |
Q |
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| T |
40675857 |
ttctttcaacgatttttcccagtaactaacctgaggcaaaggaagggtggcaagaagatcaataatgaaatcatgcttgatatatcggcgggcgatctga |
40675758 |
T |
|
| Q |
508 |
cccggatcagtgataagttctttgcgaccataaacgaaagaggtaggagaattgaaggcagttctgaacttaagaatcatgtgaaacaagaagaagagat |
607 |
Q |
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| T |
40675757 |
cccggatcagtgataagttctttgcgaccataaacgaaagaggtaggagaattgaaggcagttctgaacttaagaattatgtgaaacaagaagaagagat |
40675658 |
T |
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| Q |
608 |
ctgcgacggttcgcgag |
624 |
Q |
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| T |
40675657 |
ctgcgacggttcgcgag |
40675641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 149 - 198
Target Start/End: Complemental strand, 10096880 - 10096831
Alignment:
| Q |
149 |
ttcactatcaactaatttgactataaaatttaggttatatcaatgacaaa |
198 |
Q |
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| T |
10096880 |
ttcactatcaactaatttgcctataaaatttaggtcatatcagtgacaaa |
10096831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 246 - 308
Target Start/End: Complemental strand, 31586141 - 31586077
Alignment:
| Q |
246 |
ttaatagatggactgttttgaatgaca-tttacaatttcaa-gatgtatttaccaattcacaaaa |
308 |
Q |
| |
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| T |
31586141 |
ttaatagatggactattttgactgaaactttacaatttcaatgatgtatttaccaattctcaaaa |
31586077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 423
Target Start/End: Original strand, 40179093 - 40179134
Alignment:
| Q |
382 |
aaattctaaatcgtaactaacatatattctttcaacgatttt |
423 |
Q |
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||||| |||||| |||||||||||| |||||||||||||||| |
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| T |
40179093 |
aaattataaatcataactaacatatgttctttcaacgatttt |
40179134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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