View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5229-Insertion-12 (Length: 358)
Name: NF5229-Insertion-12
Description: NF5229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5229-Insertion-12 |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 8 - 358
Target Start/End: Complemental strand, 38336542 - 38336192
Alignment:
| Q |
8 |
gtgggcacaacacctaacgtgtaaatgctccccttttaacggatgtgaattccaatcctccatcctatttttcaggtaagagatagcaagatcatttgaa |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38336542 |
gtgggcacaacacctaacgtgtaaatgctccccttttaaaggatgtgaattccaatcctccatcctatttttcaggtaagagatagcaagatcatttgaa |
38336443 |
T |
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| Q |
108 |
ctagcattatcaacagtgatggtgaaaaccttatctatcatccaacccgccaaacacttctcaatcttttttccaattacctcccccttatgagatgtga |
207 |
Q |
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| T |
38336442 |
ctagcattatcaacagtgatggtgaaaaccttatctatcatccaaccctccaaacacttctcaaacttttttccaattacctcccccttatgagatgtga |
38336343 |
T |
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| Q |
208 |
ttggacaaaaattaagaattcttttatgcatcttccaatcttgatcaatgaaatgtgcagttagaaccatataattaatattttgcacagatgtccatgt |
307 |
Q |
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| T |
38336342 |
ttggacaaaaattaagaattcttttatgcatcttccaatcttgatcaatgaaatgtgcagttagaaccatataattaatattttgcacagatgtccatgt |
38336243 |
T |
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| Q |
308 |
atcagttgttagacaattactttgatttgctttagtaaacatgtttcttag |
358 |
Q |
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| T |
38336242 |
atcagttgttagacaaacactttgatttgctttagtaaacatgtttcttag |
38336192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 8 - 358
Target Start/End: Original strand, 29638505 - 29638855
Alignment:
| Q |
8 |
gtgggcacaacacctaacgtgtaaatgctccccttttaacggatgtgaattccaatcctccatcctatttttcaggtaagagatagcaagatcatttgaa |
107 |
Q |
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| T |
29638505 |
gtgggcacaacacctaacatgtaaatgctccccttttaacggatgtgaattccaatcctccatcctatttttcaggtaagagatagcaagatcatttaaa |
29638604 |
T |
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| Q |
108 |
ctagcattatcaacagtgatggtgaaaaccttatctatcatccaacccgccaaacacttctcaatcttttttccaattacctcccccttatgagatgtga |
207 |
Q |
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| T |
29638605 |
ctagcattatcaacagtgatggtgaaaaccttatctatcatccaaccctccaaacacttctcaatcttttttccaattacctcccccttatgagatgtga |
29638704 |
T |
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| Q |
208 |
ttggacaaaaattaagaattcttttatgcatcttccaatcttgatcaatgaaatgtgcagttagaaccatataattaatattttgcacagatgtccatgt |
307 |
Q |
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| T |
29638705 |
ttggacaaaaattaagaattcttttatgcatcttccaatcttgatcaatgaaatgtgcagttagaaccatataattaatattttgcacagatgtccatgt |
29638804 |
T |
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| Q |
308 |
atcagttgttagacaattactttgatttgctttagtaaacatgtttcttag |
358 |
Q |
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| T |
29638805 |
atcagttgttagacaaacactttgatttgctttagtaaacatgtttcttag |
29638855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 8 - 358
Target Start/End: Original strand, 20418511 - 20418861
Alignment:
| Q |
8 |
gtgggcacaacacctaacgtgtaaatgctccccttttaacggatgtgaattccaatcctccatcctatttttcaggtaagagatagcaagatcatttgaa |
107 |
Q |
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||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20418511 |
gtgggcacaacacctaacgtgtaaatgctccccttataaaggatgtgaattccaatcctccatcctatttttcaggtaagagatagcaagatcatttgaa |
20418610 |
T |
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| Q |
108 |
ctagcattatcaacagtgatggtgaaaaccttatctatcatccaacccgccaaacacttctcaatcttttttccaattacctcccccttatgagatgtga |
207 |
Q |
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| T |
20418611 |
ctagcattatcaacagtgatggtgaaaaccttatctatcatccaaccctccaaacacttctcaaacttttttccaattacctcccccttatgagatgtga |
20418710 |
T |
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| Q |
208 |
ttggacaaaaattaagaattcttttatgcatcttccaatcttgatcaatgaaatgtgcagttagaaccatataattaatattttgcacagatgtccatgt |
307 |
Q |
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| T |
20418711 |
ttggacaaaaattaagaattcttttatgcatcttccaatcttgatcaatgaaatgtgcagttagaaccatataattaatattttgcacagatgtccatgt |
20418810 |
T |
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| Q |
308 |
atcagttgttagacaattactttgatttgctttagtaaacatgtttcttag |
358 |
Q |
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| T |
20418811 |
atcagttgttagacaaacactttgatttgctttagtaaacatgtttcttag |
20418861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 84 - 293
Target Start/End: Original strand, 11217510 - 11217723
Alignment:
| Q |
84 |
taagagatagcaagatcatttgaactagcattatcaacagtgatggtgaaaaccttatctatcatccaacccgccaaacacttctcaatc-ttttttcca |
182 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||| | ||||||||||||||| ||||||||| |
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| T |
11217510 |
taagggatagcaagatcatttgaactagcattatcaacagtgatggtgaaaattttatatatcacacaaccctctaaacacttctcaatctttttttcca |
11217609 |
T |
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| Q |
183 |
attacctcccccttatgagatgtgattggacaaaaattaagaattcttttatgca---tcttccaatcttgatcaatgaaatgtgcagttagaaccatat |
279 |
Q |
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| T |
11217610 |
attacctcctccctatgagatgtaattggacaaaaaacaagaattcttttatgcatcctcctccaatcttgatcaatgaaatttgcggtaagaaccatat |
11217709 |
T |
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| Q |
280 |
aattaatattttgc |
293 |
Q |
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||||||| |||||| |
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| T |
11217710 |
aattaatgttttgc |
11217723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 51 - 272
Target Start/End: Complemental strand, 18348388 - 18348167
Alignment:
| Q |
51 |
tgtgaattccaatcctccatcctatttttcaggtaagagatagcaagatcatttgaactagcattatcaacagtgatggtgaaaaccttatctatcatcc |
150 |
Q |
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|||||||| ||||||||||| | | |||| ||||| |||| || |||||| |||||||||||||| | || ||||| ||||| ||||| |||| || |
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| T |
18348388 |
tgtgaattacaatcctccatttttctattcaagtaagtaatagaaacatcattagaactagcattatcgattgtaatggtaaaaactttatcaatcagcc |
18348289 |
T |
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| Q |
151 |
aacccgccaaacacttctcaatcttttttccaattacctcccccttatgagatgtgattggacaaaaattaagaattcttttatgcatcttccaatcttg |
250 |
Q |
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| ||| ||||||| || ||||| || | |||||| || ||| ||||| | | |||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
18348288 |
acccctccaaacatttttcaattttcctaccaattgtttctcccgtatgatctataattggacaaaaattaagaattcttttgtgcatcttccaatcttg |
18348189 |
T |
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| Q |
251 |
atcaatgaaatgtgcagttaga |
272 |
Q |
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||||| |||||||||||||||| |
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| T |
18348188 |
atcaaagaaatgtgcagttaga |
18348167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 207 - 272
Target Start/End: Complemental strand, 25345941 - 25345876
Alignment:
| Q |
207 |
attggacaaaaattaagaattcttttatgcatcttccaatcttgatcaatgaaatgtgcagttaga |
272 |
Q |
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|||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||| |
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| T |
25345941 |
attggacaaaaattaagaattcttttgtgcaacttccaatcttgatcaataaaatgtgcagttaga |
25345876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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