View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5229-Insertion-16 (Length: 256)
Name: NF5229-Insertion-16
Description: NF5229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5229-Insertion-16 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 7 - 256
Target Start/End: Original strand, 25402012 - 25402261
Alignment:
| Q |
7 |
agaatggacagtaaaatttgcaagaagtatcataacataaaccattaacgttggtgtatgtgaaaaaacttgttgaaacaaccaaacaaaagaagcatgc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25402012 |
agaatggacagtaaaatttgcaagaagtatcataacataaaccattaacgttggtgtatgtgaaaaaacttgttgaaacaaccaaacaaaagaagcatgc |
25402111 |
T |
|
| Q |
107 |
atttccttttgcactctttcaagaattccttgtaaatcttcatacaaaagaacctctctcatttgtaaagtgaaacattgaagcactctaatgatgaaca |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
25402112 |
atttccttttgcactctttcaagaattccttgtaaatcttcatacaaaagaacctctctcatttgtaaagtgaaacattgaagctctctaatgatgaaca |
25402211 |
T |
|
| Q |
207 |
ccatagaagaaaaagctttcttcactgaacaacatgctgattcaccaaca |
256 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
25402212 |
ccatagaagagaaagcttttttcactgaacaacatgctgattcaccaaca |
25402261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University