View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5229-Insertion-17 (Length: 294)
Name: NF5229-Insertion-17
Description: NF5229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5229-Insertion-17 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 7 - 294
Target Start/End: Original strand, 43777544 - 43777828
Alignment:
| Q |
7 |
acgaataacaatatatgagctatcaactatcatttaatagctaaccttttatgtttgcaaattttataacatcccttgacgcaggaacgataatgaaaaa |
106 |
Q |
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| T |
43777544 |
acgaataacaatatctgagctatcaactattatttaatagctaaccttttatgtttgcaaattttataacatcccttgacgcaggaacgataatgaaaaa |
43777643 |
T |
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| Q |
107 |
tgtctctgaaacatgttctagttaagcattcgaaacgacaattaatcaaaaatgtcgaaaaagcatgagcttgagctacaactagcataatcaccaacat |
206 |
Q |
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| T |
43777644 |
tgtctctgaaacatgttctagttaaacattcgaaacgacaattaataaaaaatgtcgaaaaagcatcagcttgagttacaactagcataatcaccaacat |
43777743 |
T |
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| Q |
207 |
catcgcaaaacattttttcacatggctcactgccataactctttttaatattttgtaacttttcttaatctccacttaaattctcaac |
294 |
Q |
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| T |
43777744 |
catcgcaaaacattttttcacatggctcactgccataactctttttaatatt---taacttttcttaatctccacttaaattctcaac |
43777828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 98 - 294
Target Start/End: Original strand, 43781181 - 43781374
Alignment:
| Q |
98 |
aatgaaaaatgtctctgaaacatgttctagttaagcattcgaaacgacaattaatcaaaaatgtcgaaaaagcatgagcttgagctacaactagcataat |
197 |
Q |
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| T |
43781181 |
aatggaaaatgtctctaaaacatgttatcgttaaacatccgacacgacattcaat---aaatggcgaaaaagcatgaggttgagttacaactagcataat |
43781277 |
T |
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| Q |
198 |
caccaacatcatcgcaaaacattttttcacatggctcactgccataactctttttaatattttgtaacttttcttaatctccacttaaattctcaac |
294 |
Q |
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| T |
43781278 |
caccaacatcatcgtaaaacattttttcacttggctcactaccataactctttttaatattttttaacttttcttaatctccactaaaattctcaac |
43781374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 246 - 294
Target Start/End: Original strand, 43770344 - 43770392
Alignment:
| Q |
246 |
tctttttaatattttgtaacttttcttaatctccacttaaattctcaac |
294 |
Q |
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| T |
43770344 |
tctttttaatattttttaacttttcttaatcaccactaaaattctcaac |
43770392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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