View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5229-Insertion-22 (Length: 203)

Name: NF5229-Insertion-22
Description: NF5229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5229-Insertion-22
NF5229-Insertion-22
[»] chr2 (18 HSPs)
chr2 (8-203)||(45154317-45154513)
chr2 (105-199)||(39445868-39445962)
chr2 (106-191)||(27974438-27974523)
chr2 (106-191)||(28060967-28061052)
chr2 (112-202)||(4633931-4634023)
chr2 (113-202)||(37847949-37848038)
chr2 (18-74)||(7772722-7772778)
chr2 (105-161)||(9973834-9973889)
chr2 (105-181)||(11511934-11512010)
chr2 (130-194)||(27974530-27974594)
chr2 (130-194)||(28061059-28061123)
chr2 (34-74)||(43302429-43302469)
chr2 (39-74)||(20683480-20683515)
chr2 (105-198)||(18379871-18379959)
chr2 (34-74)||(4062519-4062559)
chr2 (102-198)||(9043072-9043168)
chr2 (14-74)||(11511845-11511905)
chr2 (36-72)||(11916073-11916109)
[»] chr4 (11 HSPs)
chr4 (112-203)||(32212711-32212802)
chr4 (105-199)||(45047135-45047229)
chr4 (103-180)||(40946200-40946277)
chr4 (106-198)||(8757408-8757500)
chr4 (102-198)||(25479728-25479824)
chr4 (113-202)||(6077933-6078021)
chr4 (105-170)||(40047017-40047082)
chr4 (113-198)||(46061433-46061517)
chr4 (14-74)||(22424942-22425002)
chr4 (122-198)||(22702319-22702395)
chr4 (122-198)||(22991722-22991798)
[»] chr7 (10 HSPs)
chr7 (105-199)||(25795837-25795931)
chr7 (105-198)||(17603830-17603923)
chr7 (131-198)||(33174095-33174162)
chr7 (106-198)||(42710502-42710594)
chr7 (102-196)||(33815940-33816034)
chr7 (113-201)||(9486837-9486925)
chr7 (37-72)||(22074402-22074437)
chr7 (16-74)||(9486742-9486800)
chr7 (106-172)||(22074300-22074366)
chr7 (144-181)||(44238057-44238094)
[»] chr5 (16 HSPs)
chr5 (102-195)||(4942427-4942520)
chr5 (105-198)||(30471753-30471846)
chr5 (99-190)||(38037388-38037479)
chr5 (110-202)||(39955131-39955223)
chr5 (118-198)||(5367718-5367798)
chr5 (122-195)||(15558603-15558676)
chr5 (163-198)||(33494800-33494835)
chr5 (144-198)||(36974187-36974241)
chr5 (34-74)||(2552577-2552617)
chr5 (14-74)||(8433673-8433733)
chr5 (106-170)||(39324088-39324152)
chr5 (39-74)||(8680487-8680522)
chr5 (16-69)||(14640307-14640360)
chr5 (14-74)||(10933616-10933676)
chr5 (105-181)||(13417273-13417349)
chr5 (106-170)||(33207512-33207576)
[»] chr1 (21 HSPs)
chr1 (102-199)||(31206346-31206446)
chr1 (102-198)||(32913874-32913970)
chr1 (116-202)||(7712243-7712329)
chr1 (105-202)||(5040974-5041071)
chr1 (114-203)||(42483730-42483819)
chr1 (114-198)||(7789727-7789811)
chr1 (106-198)||(33259451-33259543)
chr1 (106-198)||(33279610-33279702)
chr1 (113-180)||(35615497-35615564)
chr1 (144-198)||(33603499-33603553)
chr1 (166-203)||(8444935-8444972)
chr1 (144-198)||(32544971-32545025)
chr1 (113-170)||(23625145-23625202)
chr1 (14-74)||(5827671-5827731)
chr1 (14-74)||(15456968-15457028)
chr1 (14-74)||(30335640-30335700)
chr1 (163-202)||(5114085-5114124)
chr1 (104-170)||(44415935-44416001)
chr1 (105-170)||(31636508-31636573)
chr1 (144-181)||(51244140-51244177)
chr1 (14-74)||(32913996-32914056)
[»] chr6 (5 HSPs)
chr6 (105-198)||(11703185-11703278)
chr6 (146-203)||(31632376-31632433)
chr6 (113-198)||(24141395-24141479)
chr6 (16-74)||(379093-379151)
chr6 (106-190)||(30250341-30250425)
[»] chr3 (11 HSPs)
chr3 (105-198)||(45707652-45707745)
chr3 (105-198)||(53143557-53143650)
chr3 (107-198)||(7885972-7886062)
chr3 (105-190)||(48457937-48458022)
chr3 (106-180)||(39096037-39096111)
chr3 (14-74)||(7886096-7886156)
chr3 (102-170)||(52669751-52669819)
chr3 (126-196)||(30285140-30285210)
chr3 (102-170)||(4489501-4489569)
chr3 (14-74)||(38138152-38138212)
chr3 (14-74)||(39095586-39095646)
[»] scaffold0092 (1 HSPs)
scaffold0092 (117-202)||(4843-4928)
[»] chr8 (7 HSPs)
chr8 (106-198)||(1421863-1421955)
chr8 (105-170)||(17793309-17793374)
chr8 (14-74)||(14728843-14728903)
chr8 (106-180)||(24848938-24849012)
chr8 (39-72)||(10288172-10288205)
chr8 (102-170)||(37187553-37187622)
chr8 (105-181)||(26705788-26705864)
[»] scaffold0067 (1 HSPs)
scaffold0067 (113-198)||(278-363)


Alignment Details
Target: chr2 (Bit Score: 117; Significance: 8e-60; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 8 - 203
Target Start/End: Complemental strand, 45154513 - 45154317
Alignment:
Q  8 ataactagcatccataatggagattttcaattttgaggtcttaaacaggtctcacatggacacatcannnnnnnnataacttttnnnnnnntaatatcta 107  Q
    ||||| ||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||        |||||||||       || ||||||    
T  45154513 ataaccagcattcataatggagatcttcaatcttgaggtcttaaacaggtctcacatggacacatcattttttt-ataacttttaaaaaaatagtatcta 45154415  T
Q  108 ata--gatactcaaccactccaacagagaccctttaataaaatgtttaaatggatcccaccaataactctttattatttacatttcaacaaaaacaat 203  Q
    |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45154414 atattgatactcaaccactccaacagagaccctttaataaaatgtttaaatggatcccaccaataactctttattatttacatttcaacaaaaacaat 45154317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 105 - 199
Target Start/End: Complemental strand, 39445962 - 39445868
Alignment:
Q  105 ctaatagatactcaaccactccaacagagaccctttaataaaatgtttaaatggatcccaccaataactctttattatttacatttcaacaaaaa 199  Q
    ||||||| || ||||||||||||| |||||||||  || |||| ||||||||||   ||||||||||||||||||||||||||||||||||||||    
T  39445962 ctaataggtattcaaccactccaatagagaccctccaacaaaaggtttaaatgggatccaccaataactctttattatttacatttcaacaaaaa 39445868  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 106 - 191
Target Start/End: Original strand, 27974438 - 27974523
Alignment:
Q  106 taatagatactcaaccactccaacagagaccctttaataaaatgtttaaatggatcccaccaataactctttattatttacatttc 191  Q
    ||||||||||||||||||| ||| |||||| |||||| ||||||| ||||||  ||| |||||||||||||||| |||||||||||    
T  27974438 taatagatactcaaccacttcaatagagactctttaacaaaatgtctaaatgagtccaaccaataactctttatcatttacatttc 27974523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 106 - 191
Target Start/End: Original strand, 28060967 - 28061052
Alignment:
Q  106 taatagatactcaaccactccaacagagaccctttaataaaatgtttaaatggatcccaccaataactctttattatttacatttc 191  Q
    ||||||||||||||||||| ||| |||||| |||||| ||||||| ||||||  ||| |||||||||||||||| |||||||||||    
T  28060967 taatagatactcaaccacttcaatagagactctttaacaaaatgtctaaatgagtccaaccaataactctttatcatttacatttc 28061052  T

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Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 112 - 202
Target Start/End: Complemental strand, 4634023 - 4633931
Alignment:
Q  112 atactcaaccactccaacagagaccctttaataaaatgtttaaatggatcccaccaataactctttat--tatttacatttcaacaaaaacaa 202  Q
    ||||||||||||| |||  |||||  | ||||||||||| ||||||||||||||||||||||||||||  | ||||| |||||||||||||||    
T  4634023 atactcaaccacttcaatggagactttctaataaaatgtctaaatggatcccaccaataactctttatcatttttacctttcaacaaaaacaa 4633931  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 202
Target Start/End: Complemental strand, 37848038 - 37847949
Alignment:
Q  113 tactcaaccactccaacagagaccctttaataaaatgtttaaatggatcccaccaataactctttattatttacatttcaacaaaaacaa 202  Q
    ||||||||||||| |   |||||| ||||| |||| |||||||||| |  ||| ||||||| ||||| |||||||||| |||||||||||    
T  37848038 tactcaaccactcaattggagaccttttaacaaaaggtttaaatggttgacacaaataactatttatcatttacattttaacaaaaacaa 37847949  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 7772722 - 7772778
Alignment:
Q  18 tccataatggagattttcaattttgaggtcttaaacaggtctcacatggacacatca 74  Q
    |||| ||||||||  ||||||||| ||||||||||| | ||||||||||||||||||    
T  7772722 tccacaatggagaccttcaattttaaggtcttaaacggatctcacatggacacatca 7772778  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 9973834 - 9973889
Alignment:
Q  105 ctaatagatactcaaccactccaacagagaccctttaataaaatgtttaaatggatc 161  Q
    ||||||| ||| |||||||||||| ||||||| ||||||||||||| ||||||||||    
T  9973834 ctaataggtacccaaccactccaatagagacc-tttaataaaatgtctaaatggatc 9973889  T

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Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 181
Target Start/End: Original strand, 11511934 - 11512010
Alignment:
Q  105 ctaatagatactcaaccactccaacagagaccctttaataaaatgtttaaatggatcccaccaataactctttatta 181  Q
    ||||||| |||||||||||||||| ||||| ||| ||  |||| || ||||||| |||||| ||||||| |||||||    
T  11511934 ctaataggtactcaaccactccaatagagatcctctatcaaaaggtctaaatgggtcccacaaataactatttatta 11512010  T

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Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 27974530 - 27974594
Alignment:
Q  130 agagaccctttaataaaatgtttaaatggatcccaccaataactctttattatttacatttcaac 194  Q
    |||||| |||||| ||||||| ||||| | ||| |||||||||||||||| |||||| |||||||    
T  27974530 agagactctttaacaaaatgtctaaataggtccaaccaataactctttatcatttacttttcaac 27974594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 28061059 - 28061123
Alignment:
Q  130 agagaccctttaataaaatgtttaaatggatcccaccaataactctttattatttacatttcaac 194  Q
    |||||| |||||| ||||||| ||||| | ||| |||||||||||||||| |||||| |||||||    
T  28061059 agagactctttaacaaaatgtctaaataggtccaaccaataactctttatcatttacttttcaac 28061123  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 43302469 - 43302429
Alignment:
Q  34 tcaattttgaggtcttaaacaggtctcacatggacacatca 74  Q
    ||||||||||||||||||||||||| ||||| |||||||||    
T  43302469 tcaattttgaggtcttaaacaggtcccacattgacacatca 43302429  T

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Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 74
Target Start/End: Complemental strand, 20683515 - 20683480
Alignment:
Q  39 tttgaggtcttaaacaggtctcacatggacacatca 74  Q
    |||||||||||||| |||||||||||||||||||||    
T  20683515 tttgaggtcttaaataggtctcacatggacacatca 20683480  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 105 - 198
Target Start/End: Complemental strand, 18379959 - 18379871
Alignment:
Q  105 ctaatagatactcaaccactccaacagagaccctttaataaaatgtttaaatggatcccaccaataactctttattatttacatttcaacaaaa 198  Q
    |||||||||| ||||||||||||| |     ||| |||||||||||  ||||   | |||||||||||||||||| ||| ||||||||||||||    
T  18379959 ctaatagatattcaaccactccaata-----cctctaataaaatgtcaaaatacgttccaccaataactctttatcattcacatttcaacaaaa 18379871  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 74
Target Start/End: Original strand, 4062519 - 4062559
Alignment:
Q  34 tcaattttgaggtcttaaacaggtctcacatggacacatca 74  Q
    |||||||||||||||||||| | | ||||||||||||||||    
T  4062519 tcaattttgaggtcttaaacggatttcacatggacacatca 4062559  T

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Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 198
Target Start/End: Original strand, 9043072 - 9043168
Alignment:
Q  102 tatctaatagatactcaaccactccaacagagaccctttaataaaatgtttaaatggatcccaccaataactctttattatttacatttcaacaaaa 198  Q
    |||||||| | ||| ||||||||  || ||||| ||| ||| |||||||| |||||  | |||| ||||| ||||||| ||||| ||||||||||||    
T  9043072 tatctaattggtacccaaccactttaatagagatcctctaacaaaatgttcaaatgacttccactaataattctttatcatttatatttcaacaaaa 9043168  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 11511845 - 11511905
Alignment:
Q  14 agcatccataatggagattttcaattttgaggtcttaaacaggtctcacatggacacatca 74  Q
    |||||||| ||||||||   |||  ||||||||||||||| |||| |||||||||||||||    
T  11511845 agcatccacaatggagacactcatatttgaggtcttaaacgggtcccacatggacacatca 11511905  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 11916109 - 11916073
Alignment:
Q  36 aattttgaggtcttaaacaggtctcacatggacacat 72  Q
    |||||||||||||||||  ||||||||||||||||||    
T  11916109 aattttgaggtcttaaaggggtctcacatggacacat 11916073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 8e-26; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 112 - 203
Target Start/End: Original strand, 32212711 - 32212802
Alignment:
Q  112 atactcaaccactccaacagagaccctttaataaaatgtttaaatggatcccaccaataactctttattatttacatttcaacaaaaacaat 203  Q
    ||||||||||||||||| ||||||||| ||| |||| || ||||||| |||||||||||||||||||| |||||||||||||||||| ||||    
T  32212711 atactcaaccactccaatagagaccctctaacaaaaggtctaaatgggtcccaccaataactctttatcatttacatttcaacaaaagcaat 32212802  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 105 - 199
Target Start/End: Original strand, 45047135 - 45047229
Alignment:
Q  105 ctaatagatactcaaccactccaacagagaccctttaataaaatgtttaaatggatcccaccaataactctttattatttacatttcaacaaaaa 199  Q
    ||||||| ||||||||||||| || ||||||||| ||| ||||||||||||||   |||||||||| |||||||| |||||||||||||||||||    
T  45047135 ctaataggtactcaaccactcaaatagagaccctctaacaaaatgtttaaatgagacccaccaatagctctttatcatttacatttcaacaaaaa 45047229  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 103 - 180
Target Start/End: Original strand, 40946200 - 40946277
Alignment:
Q  103 atctaatagatactcaaccactccaacagagaccctttaataaaatgtttaaatggatcccaccaataactctttatt 180  Q
    ||||||||| |||||||||||||||| ||||||||||||| |||| ||||| ||| ||||||||||||||| ||||||    
T  40946200 atctaataggtactcaaccactccaatagagaccctttaacaaaaggtttatatgaatcccaccaataactatttatt 40946277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 106 - 198
Target Start/End: Complemental strand, 8757500 - 8757408
Alignment:
Q  106 taatagatactcaaccactccaacagagaccctttaataaaatgtttaaatggatcccaccaataactctttattatttacatttcaacaaaa 198  Q
    |||||| |||||||||| ||||| ||||| ||| ||  ||||||| |||||||||| || |||||||| ||||| ||||||||||||||||||    
T  8757500 taataggtactcaaccattccaatagagatcctctaccaaaatgtctaaatggatcacatcaataactttttatcatttacatttcaacaaaa 8757408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 102 - 198
Target Start/End: Complemental strand, 25479824 - 25479728
Alignment:
Q  102 tatctaatagatactcaaccactccaacagagaccctttaataaaatgtttaaatggatcccaccaataactctttattatttacatttcaacaaaa 198  Q
    |||||||||  |||||||||||| ||| ||||| | | ||| ||||||| ||||||  |||| ||||||||||||||| ||||||||||||||||||    
T  25479824 tatctaataagtactcaaccacttcaatagagatcttctaacaaaatgtataaatgactccctccaataactctttatcatttacatttcaacaaaa 25479728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 113 - 202
Target Start/End: Original strand, 6077933 - 6078021
Alignment:
Q  113 tactcaaccactccaacagagaccctttaataaaatgtttaaatggatcccaccaataactctttattatttacatttcaacaaaaacaa 202  Q
    |||||||||||||||| ||||| | | ||| ||||| ||||||||  |||||||||||||||||| | |||||| |||||||||||||||    
T  6077933 tactcaaccactccaatagagatcatataacaaaatatttaaatgagtcccaccaataactctttgtcatttac-tttcaacaaaaacaa 6078021  T

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Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 170
Target Start/End: Complemental strand, 40047082 - 40047017
Alignment:
Q  105 ctaatagatactcaaccactccaacagagaccctttaataaaatgtttaaatggatcccaccaata 170  Q
    |||||||||||||||||||| ||| ||||||||| ||| |||| |||||| ||| |||||||||||    
T  40047082 ctaatagatactcaaccacttcaatagagaccctctaacaaaaagtttaattgggtcccaccaata 40047017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 198
Target Start/End: Original strand, 46061433 - 46061517
Alignment:
Q  113 tactcaaccactccaacagagaccctttaataaaatgtttaaatggatcccaccaataactctttattatttacatttcaacaaaa 198  Q
    |||||||||||||||| | ||||| | ||||||||| | ||||||  | |||||| ||| |||| |||||||||||||||||||||    
T  46061433 tactcaaccactccaataaagaccatctaataaaatatctaaatgagtaccaccagtaagtctt-attatttacatttcaacaaaa 46061517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 22424942 - 22425002
Alignment:
Q  14 agcatccataatggagattttcaattttgaggtcttaaacaggtctcacatggacacatca 74  Q
    |||||||| ||||||||  ||||| |||||||||||||| ||||  |||||||||||||||    
T  22424942 agcatccacaatggagaccttcaactttgaggtcttaaataggttccacatggacacatca 22425002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 198
Target Start/End: Original strand, 22702319 - 22702395
Alignment:
Q  122 actccaacagagaccctttaataaaatgtttaaatggatcccaccaataactctttattatttacatttcaacaaaa 198  Q
    ||||||| |||||| || ||| ||||||| |||||||  | | ||||||||||||||| ||||| |||| |||||||    
T  22702319 actccaatagagactctctaacaaaatgtctaaatgggactcgccaataactctttatcatttatattttaacaaaa 22702395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 198
Target Start/End: Complemental strand, 22991798 - 22991722
Alignment:
Q  122 actccaacagagaccctttaataaaatgtttaaatggatcccaccaataactctttattatttacatttcaacaaaa 198  Q
    ||||||| |||||| || ||| ||||||| |||||||  | | ||||||||||||||| ||||| |||| |||||||    
T  22991798 actccaatagagactctctaacaaaatgtctaaatgggactcgccaataactctttatcatttatattttaacaaaa 22991722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 3e-25; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 105 - 199
Target Start/End: Original strand, 25795837 - 25795931
Alignment:
Q  105 ctaatagatactcaaccactccaacagagaccctttaataaaatgtttaaatggatcccaccaataactctttattatttacatttcaacaaaaa 199  Q
    ||||||| |||||||||||||||| ||||| ||| ||| |||| || |||||||| ||||||||||||||||||| |||||||||||||||||||    
T  25795837 ctaataggtactcaaccactccaatagagatcctctaacaaaaggtctaaatggaacccaccaataactctttatcatttacatttcaacaaaaa 25795931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 105 - 198
Target Start/End: Original strand, 17603830 - 17603923
Alignment:
Q  105 ctaatagatactcaaccactccaacagagaccctttaataaaatgtttaaatggatcccaccaataactctttattatttacatttcaacaaaa 198  Q
    ||||||| |||||||||||||||| ||| ||||| ||  ||||  |||||||||  ||||||||||||||||||| ||||||||||||| ||||    
T  17603830 ctaataggtactcaaccactccaatagataccctctagcaaaagatttaaatgggacccaccaataactctttatcatttacatttcaataaaa 17603923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 131 - 198
Target Start/End: Original strand, 33174095 - 33174162
Alignment:
Q  131 gagaccctttaataaaatgtttaaatggatcccaccaataactctttattatttacatttcaacaaaa 198  Q
    |||||||||||||||||  ||||||||| | |||||||||||||||||| || |||||||||||||||    
T  33174095 gagaccctttaataaaaaatttaaatgggttccaccaataactctttatcatatacatttcaacaaaa 33174162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 106 - 198
Target Start/End: Original strand, 42710502 - 42710594
Alignment:
Q  106 taatagatactcaaccactccaacagagaccctttaataaaatgtttaaatggatcccaccaataactctttattatttacatttcaacaaaa 198  Q
    |||||| || |||| |||| ||| ||||||||| ||| |||| || ||||||   || |||||||||||||||| ||||||||||||||||||    
T  42710502 taataggtattcaatcacttcaatagagaccctctaacaaaaggtctaaatgagaccaaccaataactctttatcatttacatttcaacaaaa 42710594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 102 - 196
Target Start/End: Original strand, 33815940 - 33816034
Alignment:
Q  102 tatctaatagatactcaaccactccaacagagaccctttaataaaatgtttaaatggatcccaccaataactctttattatttacatttcaacaa 196  Q
    ||||||||| | |||||| |||| ||| ||||| ||| ||| ||||||| ||||  | |||||||| |||||||| || ||||||||||||||||    
T  33815940 tatctaataaacactcaatcactacaatagagatcctctaacaaaatgtctaaaccggtcccaccactaactcttcatcatttacatttcaacaa 33816034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 201
Target Start/End: Original strand, 9486837 - 9486925
Alignment:
Q  113 tactcaaccactccaacagagaccctttaataaaatgtttaaatggatcccaccaataactctttattatttacatttcaacaaaaaca 201  Q
    ||||||| |||| ||| | ||||||| ||| ||||||| ||||||     ||||||||||||||||| |||||||||| ||||||||||    
T  9486837 tactcaatcactgcaataaagaccctataacaaaatgtctaaatgagctacaccaataactctttatcatttacattttaacaaaaaca 9486925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 37 - 72
Target Start/End: Complemental strand, 22074437 - 22074402
Alignment:
Q  37 attttgaggtcttaaacaggtctcacatggacacat 72  Q
    ||||||||||||||||| ||||||||||||||||||    
T  22074437 attttgaggtcttaaacgggtctcacatggacacat 22074402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 9486742 - 9486800
Alignment:
Q  16 catccataatggagattttcaattttgaggtcttaaacaggtctcacatggacacatca 74  Q
    ||||||||||||||| | | ||||||||| |||||||| |||||||||||  |||||||    
T  9486742 catccataatggagactcttaattttgagatcttaaacgggtctcacatgtgcacatca 9486800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 172
Target Start/End: Complemental strand, 22074366 - 22074300
Alignment:
Q  106 taatagatactcaaccactccaacagagaccctttaataaaatgtttaaatggatcccaccaataac 172  Q
    |||||||||||||||||||||||  || ||||| ||| |||| || || |||| |||||||||||||    
T  22074366 taatagatactcaaccactccaatggaaaccctataacaaaaggtctatatgggtcccaccaataac 22074300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 181
Target Start/End: Original strand, 44238057 - 44238094
Alignment:
Q  144 aaaatgtttaaatggatcccaccaataactctttatta 181  Q
    |||| ||||||||||||||||||||||||| |||||||    
T  44238057 aaaaagtttaaatggatcccaccaataactatttatta 44238094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 1e-24; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 102 - 195
Target Start/End: Original strand, 4942427 - 4942520
Alignment:
Q  102 tatctaatagatactcaaccactccaacagagaccctttaataaaatgtttaaatggatcccaccaataactctttattatttacatttcaaca 195  Q
    ||||||| |||||||||||||| |||| ||||||||||||| |||| || ||||||||  |||||||||||||||||| |||||||||||||||    
T  4942427 tatctaacagatactcaaccacaccaatagagaccctttaacaaaaggtctaaatggaatccaccaataactctttatcatttacatttcaaca 4942520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 105 - 198
Target Start/End: Complemental strand, 30471846 - 30471753
Alignment:
Q  105 ctaatagatactcaaccactccaacagagaccctttaataaaatgtttaaatggatcccaccaataactctttattatttacatttcaacaaaa 198  Q
    ||||||| ||||||||||||||||||||||| || ||| |||| || |||||||  ||||||||||||||||||| |||||||||| |||||||    
T  30471846 ctaataggtactcaaccactccaacagagacgctctaacaaaaggtctaaatgggacccaccaataactctttatcatttacatttaaacaaaa 30471753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 99 - 190
Target Start/End: Complemental strand, 38037479 - 38037388
Alignment:
Q  99 taatatctaatagatactcaaccactccaacagagaccctttaataaaatgtttaaatggatcccaccaataactctttattatttacattt 190  Q
    ||||||||||||| ||||||| |||||||| |||||  || ||| |||| |||||||||| | |||||||||||||||||| ||||||||||    
T  38037479 taatatctaataggtactcaatcactccaatagagaatctctaacaaaaagtttaaatgggttccaccaataactctttatcatttacattt 38037388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 110 - 202
Target Start/End: Original strand, 39955131 - 39955223
Alignment:
Q  110 agatactcaaccactccaacagagaccctttaataaaatgtttaaatggatcccaccaataactctttattatttacatttcaacaaaaacaa 202  Q
    ||||| ||||||||||||||| ||| |   ||| ||||||||||||||| || ||||||||||| ||||  ||||||||||||||||||||||    
T  39955131 agatattcaaccactccaacaaagatctcctaacaaaatgtttaaatgggtctcaccaataactatttaccatttacatttcaacaaaaacaa 39955223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 118 - 198
Target Start/End: Complemental strand, 5367798 - 5367718
Alignment:
Q  118 aaccactccaacagagaccctttaataaaatgtttaaatggatcccaccaataactctttattatttacatttcaacaaaa 198  Q
    ||||||||||| ||||||  ||||| ||||  | |||||||| |||| |||||||||||||| ||||||||||||||||||    
T  5367798 aaccactccaatagagactttttaacaaaagatctaaatggaacccatcaataactctttatcatttacatttcaacaaaa 5367718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 122 - 195
Target Start/End: Complemental strand, 15558676 - 15558603
Alignment:
Q  122 actccaacagagaccctttaataaaatgtttaaatggatcccaccaataactctttattatttacatttcaaca 195  Q
    ||||||| ||||||||||||| ||||||||||||||   | ||||||||||||||||| ||||| |||| ||||    
T  15558676 actccaatagagaccctttaacaaaatgtttaaatgagactcaccaataactctttatcatttatattttaaca 15558603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 198
Target Start/End: Original strand, 33494800 - 33494835
Alignment:
Q  163 caccaataactctttattatttacatttcaacaaaa 198  Q
    ||||||||||||||||||||||||||||||||||||    
T  33494800 caccaataactctttattatttacatttcaacaaaa 33494835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 144 - 198
Target Start/End: Original strand, 36974187 - 36974241
Alignment:
Q  144 aaaatgtttaaatggatcccaccaataactctttattatttacatttcaacaaaa 198  Q
    |||| |||| ||||| | |||||||||||||||||| ||||||||||||||||||    
T  36974187 aaaaggttttaatgggttccaccaataactctttatcatttacatttcaacaaaa 36974241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 2552617 - 2552577
Alignment:
Q  34 tcaattttgaggtcttaaacaggtctcacatggacacatca 74  Q
    ||||||| ||||||||||||||||||||||| |||||||||    
T  2552617 tcaatttggaggtcttaaacaggtctcacatagacacatca 2552577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 8433673 - 8433733
Alignment:
Q  14 agcatccataatggagattttcaattttgaggtcttaaacaggtctcacatggacacatca 74  Q
    |||||||| ||||||||   |||| |||||||||||||| ||||| |||||||||||||||    
T  8433673 agcatccacaatggagaccctcaactttgaggtcttaaataggtcccacatggacacatca 8433733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 170
Target Start/End: Original strand, 39324088 - 39324152
Alignment:
Q  106 taatagatactcaaccactccaacagagaccctttaataaaatgtttaaatggatcccaccaata 170  Q
    |||||| ||||||||||||||||  |||||||| ||| |||| || ||| |||||||||||||||    
T  39324088 taataggtactcaaccactccaatggagaccctataacaaaaggtctaattggatcccaccaata 39324152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 74
Target Start/End: Original strand, 8680487 - 8680522
Alignment:
Q  39 tttgaggtcttaaacaggtctcacatggacacatca 74  Q
    ||||||||||||||| ||||||||||||||||||||    
T  8680487 tttgaggtcttaaacgggtctcacatggacacatca 8680522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 14640360 - 14640307
Alignment:
Q  16 catccataatggagattttcaattttgaggtcttaaacaggtctcacatggaca 69  Q
    ||||||||||||||||||| |  ||||| ||||||||| |||| ||||||||||    
T  14640360 catccataatggagatttttatatttgatgtcttaaacgggtcccacatggaca 14640307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 10933676 - 10933616
Alignment:
Q  14 agcatccataatggagattttcaattttgaggtcttaaacaggtctcacatggacacatca 74  Q
    ||||||||||||| | | | |||  ||||||||||||||| ||| ||||||||||||||||    
T  10933676 agcatccataatgaacactctcacatttgaggtcttaaacgggtatcacatggacacatca 10933616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 181
Target Start/End: Original strand, 13417273 - 13417349
Alignment:
Q  105 ctaatagatactcaaccactccaacagagaccctttaataaaatgtttaaatggatcccaccaataactctttatta 181  Q
    ||||||| |||||||||||||||| ||||| | | ||  |||| || ||||| | |||||||||||||| |||||||    
T  13417273 ctaataggtactcaaccactccaatagagatcatctatcaaaaggtctaaataggtcccaccaataactatttatta 13417349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 170
Target Start/End: Original strand, 33207512 - 33207576
Alignment:
Q  106 taatagatactcaaccactccaacagagaccctttaataaaatgtttaaatggatcccaccaata 170  Q
    |||||| ||||||||||||||||  |||||||| ||| |||| || ||| ||| |||||||||||    
T  33207512 taataggtactcaaccactccaatggagaccctctaacaaaaggtctaattgggtcccaccaata 33207576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 5e-24; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 102 - 199
Target Start/End: Original strand, 31206346 - 31206446
Alignment:
Q  102 tatctaatagatactcaaccactccaacagagaccct-ttaataaaa-tgtttaaatggatcccaccaataactc-tttattatttacatttcaacaaaa 198  Q
    ||||||||| ||||||||||||||||| ||||||||| ||||||||| ||| ||||||||||||||||||||||| ||||| ||||| ||||||||||||    
T  31206346 tatctaataaatactcaaccactccaatagagaccctcttaataaaaatgtctaaatggatcccaccaataactcttttatcatttatatttcaacaaaa 31206445  T
Q  199 a 199  Q
    |    
T  31206446 a 31206446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 102 - 198
Target Start/End: Complemental strand, 32913970 - 32913874
Alignment:
Q  102 tatctaatagatactcaaccactccaacagagaccctttaataaaatgtttaaatggatcccaccaataactctttattatttacatttcaacaaaa 198  Q
    |||||||||| ||||||| |||||||| ||||| ||| ||| |||| | |||||||| |||||| ||||||||||||| ||||||||||||||||||    
T  32913970 tatctaataggtactcaatcactccaatagagaacctctaacaaaaagcttaaatgggtcccactaataactctttatcatttacatttcaacaaaa 32913874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 116 - 202
Target Start/End: Original strand, 7712243 - 7712329
Alignment:
Q  116 tcaaccactccaacagagaccctttaataaaatgtttaaatggatcccaccaataactctttattatttacatttcaacaaaaacaa 202  Q
    ||||||||||||| ||||| ||| ||| ||||||| |||||||||| || |||||||| ||||| ||||||||||||||||||||||    
T  7712243 tcaaccactccaatagagatcctataacaaaatgtctaaatggatctcaacaataactttttatcatttacatttcaacaaaaacaa 7712329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 105 - 202
Target Start/End: Original strand, 5040974 - 5041071
Alignment:
Q  105 ctaatagatactcaaccactccaacagagaccctttaataaaatgtttaaatggatcccaccaataactctttattatttacatttcaacaaaaacaa 202  Q
    ||||||| ||||||| ||||| || ||||| ||| ||| ||||||| |||||| ||||||||||||||| ||||| ||||| ||||||||||||||||    
T  5040974 ctaataggtactcaatcactctaatagagagcctgtaacaaaatgtgtaaatgaatcccaccaataactttttatcatttatatttcaacaaaaacaa 5041071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 114 - 203
Target Start/End: Original strand, 42483730 - 42483819
Alignment:
Q  114 actcaaccactccaacagagaccctttaataaaatgtttaaatggatcccaccaataactctttattatttacatttcaacaaaaacaat 203  Q
    |||||| || |||||  |||||||| ||| ||||| | ||| ||| ||||||||||||||| |||| |||||||||||||||||||||||    
T  42483730 actcaatcattccaatggagaccctctaacaaaatatctaactgggtcccaccaataactcattatcatttacatttcaacaaaaacaat 42483819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 198
Target Start/End: Complemental strand, 7789811 - 7789727
Alignment:
Q  114 actcaaccactccaacagagaccctttaataaaatgtttaaatggatcccaccaataactctttattatttacatttcaacaaaa 198  Q
    |||||| |||||||| ||||| ||||||| |||| ||| |||||  |  ||||||||||||||||| ||||||||||||||||||    
T  7789811 actcaatcactccaatagagaacctttaacaaaaagttcaaatgagtatcaccaataactctttatcatttacatttcaacaaaa 7789727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 106 - 198
Target Start/End: Original strand, 33259451 - 33259543
Alignment:
Q  106 taatagatactcaaccactccaacagagaccctttaataaaatgtttaaatggatcccaccaataactctttattatttacatttcaacaaaa 198  Q
    |||||| ||||||| |||||||| ||| ||||| ||| |||| |||||||||   ||||||||||| | ||||| ||||||||||||||||||    
T  33259451 taataggtactcaatcactccaatagaaaccctgtaacaaaaggtttaaatgagacccaccaataattttttatcatttacatttcaacaaaa 33259543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 106 - 198
Target Start/End: Original strand, 33279610 - 33279702
Alignment:
Q  106 taatagatactcaaccactccaacagagaccctttaataaaatgtttaaatggatcccaccaataactctttattatttacatttcaacaaaa 198  Q
    |||||| ||||||| |||||||| ||| ||||| ||| |||| |||||||||   ||||||||||| | ||||| ||||||||||||||||||    
T  33279610 taataggtactcaatcactccaatagaaaccctgtaacaaaaggtttaaatgagacccaccaataattttttatcatttacatttcaacaaaa 33279702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 113 - 180
Target Start/End: Original strand, 35615497 - 35615564
Alignment:
Q  113 tactcaaccactccaacagagaccctttaataaaatgtttaaatggatcccaccaataactctttatt 180  Q
    |||||||||||| |||   ||||||||||||||||||| ||||||| |||||||||||||| ||||||    
T  35615497 tactcaaccacttcaatgaagaccctttaataaaatgtctaaatgggtcccaccaataactatttatt 35615564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 144 - 198
Target Start/End: Original strand, 33603499 - 33603553
Alignment:
Q  144 aaaatgtttaaatggatcccaccaataactctttattatttacatttcaacaaaa 198  Q
    ||||||||||||||| ||  |||||||||||||||| ||||||||||||||||||    
T  33603499 aaaatgtttaaatgggtcataccaataactctttatcatttacatttcaacaaaa 33603553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 203
Target Start/End: Complemental strand, 8444972 - 8444935
Alignment:
Q  166 caataactctttattatttacatttcaacaaaaacaat 203  Q
    ||||||||||||||||||||||||||||||||||||||    
T  8444972 caataactctttattatttacatttcaacaaaaacaat 8444935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 144 - 198
Target Start/End: Complemental strand, 32545025 - 32544971
Alignment:
Q  144 aaaatgtttaaatggatcccaccaataactctttattatttacatttcaacaaaa 198  Q
    ||||||| ||||||| ||| || ||||||||||||||||||||||||||| ||||    
T  32545025 aaaatgtctaaatgggtcctactaataactctttattatttacatttcaataaaa 32544971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 170
Target Start/End: Complemental strand, 23625202 - 23625145
Alignment:
Q  113 tactcaaccactccaacagagaccctttaataaaatgtttaaatggatcccaccaata 170  Q
    |||||||||||||||| ||||||||| ||| |||| || ||| |||||||||||||||    
T  23625202 tactcaaccactccaatagagaccctctaacaaaaggtctaattggatcccaccaata 23625145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 5827731 - 5827671
Alignment:
Q  14 agcatccataatggagattttcaattttgaggtcttaaacaggtctcacatggacacatca 74  Q
    |||||||| |||||||| | |||  |||||||| |||||| ||||||||||||||||||||    
T  5827731 agcatccacaatggagactctcacatttgaggttttaaacgggtctcacatggacacatca 5827671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 15456968 - 15457028
Alignment:
Q  14 agcatccataatggagattttcaattttgaggtcttaaacaggtctcacatggacacatca 74  Q
    |||||||| |||| ||| ||||||||| ||||||| |||| ||||||||||||| ||||||    
T  15456968 agcatccacaatgaagactttcaatttggaggtctgaaacgggtctcacatggatacatca 15457028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 30335640 - 30335700
Alignment:
Q  14 agcatccataatggagattttcaattttgaggtcttaaacaggtctcacatggacacatca 74  Q
    |||||||| ||||||||   |||| ||||||||||||||||||| |||||| |||||||||    
T  30335640 agcatccacaatggagaccctcaactttgaggtcttaaacaggtttcacattgacacatca 30335700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 163 - 202
Target Start/End: Original strand, 5114085 - 5114124
Alignment:
Q  163 caccaataactctttattatttacatttcaacaaaaacaa 202  Q
    |||||||||||||| || ||||||||||||||||||||||    
T  5114085 caccaataactcttcatcatttacatttcaacaaaaacaa 5114124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 170
Target Start/End: Complemental strand, 44416001 - 44415935
Alignment:
Q  104 tctaatagatactcaaccactccaacagagaccctttaataaaatgtttaaatggatcccaccaata 170  Q
    |||||| |||||| ||||||||||||  ||||||| ||| ||||||| ||| ||| |||||||||||    
T  44416001 tctaatggatactaaaccactccaacgaagaccctctaacaaaatgtctaattgggtcccaccaata 44415935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 105 - 170
Target Start/End: Complemental strand, 31636573 - 31636508
Alignment:
Q  105 ctaatagatactcaaccactccaacagagaccctttaataaaatgtttaaatggatcccaccaata 170  Q
    ||||||| ||||||||||||||||  |||||||| ||| |||| || ||| ||| |||||||||||    
T  31636573 ctaataggtactcaaccactccaatggagaccctctaacaaaaagtctaattgggtcccaccaata 31636508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 181
Target Start/End: Original strand, 51244140 - 51244177
Alignment:
Q  144 aaaatgtttaaatggatcccaccaataactctttatta 181  Q
    ||||||||||||||| |||||||||||||| |||||||    
T  51244140 aaaatgtttaaatgggtcccaccaataactatttatta 51244177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 32914056 - 32913996
Alignment:
Q  14 agcatccataatggagattttcaattttgaggtcttaaacaggtctcacatggacacatca 74  Q
    |||||||| ||| ||||  |||||| |||||||||||||| ||||||||||  ||||||||    
T  32914056 agcatccacaatagagacattcaatcttgaggtcttaaacgggtctcacatatacacatca 32913996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 8e-20; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 105 - 198
Target Start/End: Original strand, 11703185 - 11703278
Alignment:
Q  105 ctaatagatactcaaccactccaacagagaccctttaataaaatgtttaaatggatcccaccaataactctttattatttacatttcaacaaaa 198  Q
    ||||||| |||||||||||||||| ||||||||| ||| |||| || ||||||   ||||||||||||||||||| |||||||||| |||||||    
T  11703185 ctaataggtactcaaccactccaatagagaccctctaacaaaaggtctaaatgagacccaccaataactctttatcatttacattttaacaaaa 11703278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 203
Target Start/End: Original strand, 31632376 - 31632433
Alignment:
Q  146 aatgtttaaatggatcccaccaataactctttattatttacatttcaacaaaaacaat 203  Q
    ||||| ||||||| || ||||||||||||||||| |||||||||||||||||| ||||    
T  31632376 aatgtctaaatggttctcaccaataactctttatcatttacatttcaacaaaagcaat 31632433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 198
Target Start/End: Complemental strand, 24141479 - 24141395
Alignment:
Q  113 tactcaaccactccaacagagaccctttaataaaatgtttaaatggatcccaccaataactctttattatttacatttcaacaaaa 198  Q
    ||||||| |||| ||| ||||||| | ||| ||||||| ||||| || |||| |||||||||||||| ||||||||||||| ||||    
T  24141479 tactcaatcactacaatagagacc-tctaacaaaatgtctaaatagaacccatcaataactctttatcatttacatttcaataaaa 24141395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 379151 - 379093
Alignment:
Q  16 catccataatggagattttcaattttgaggtcttaaacaggtctcacatggacacatca 74  Q
    |||||| ||| |||| | |||||||||||||||||||| |||| ||||| |||||||||    
T  379151 catccacaatagagactctcaattttgaggtcttaaacgggtcccacatagacacatca 379093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 190
Target Start/End: Complemental strand, 30250425 - 30250341
Alignment:
Q  106 taatagatactcaaccactccaacagagaccctttaataaaatgtttaaatggatcccaccaataactctttattatttacattt 190  Q
    |||||| || ||||| ||||||| ||||| ||| ||| |||| || ||||||  || || |||||||||||||| ||||||||||    
T  30250425 taataggtaatcaacaactccaatagagatcctctaagaaaaagtctaaatgtgtctcatcaataactctttatcatttacattt 30250341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 8e-20; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 105 - 198
Target Start/End: Complemental strand, 45707745 - 45707652
Alignment:
Q  105 ctaatagatactcaaccactccaacagagaccctttaataaaatgtttaaatggatcccaccaataactctttattatttacatttcaacaaaa 198  Q
    ||||||| |||||||||||||||| ||||| ||| ||| ||| ||||||||||| | |||| || |||||||||| ||||||||||||||||||    
T  45707745 ctaataggtactcaaccactccaatagagatcctctaacaaattgtttaaatggtttccacaaacaactctttatcatttacatttcaacaaaa 45707652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 105 - 198
Target Start/End: Complemental strand, 53143650 - 53143557
Alignment:
Q  105 ctaatagatactcaaccactccaacagagaccctttaataaaatgtttaaatggatcccaccaataactctttattatttacatttcaacaaaa 198  Q
    |||||||||||||||||||||||| ||||||  | || |||||  | ||||| ||  |||||||||||||||||| ||||||||||||||||||    
T  53143650 ctaatagatactcaaccactccaatagagacaatctattaaaagatctaaatagaatccaccaataactctttatcatttacatttcaacaaaa 53143557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 107 - 198
Target Start/End: Complemental strand, 7886062 - 7885972
Alignment:
Q  107 aatagatactcaaccactccaacagagaccctttaataaaatgtttaaatggatcccaccaataactctttattatttacatttcaacaaaa 198  Q
    ||||| |||||| ||| ||||| |||||| || ||| ||||||||||||||| || ||||||||||||||||| ||||| ||||||||||||    
T  7886062 aataggtactcagccattccaatagagactctctaacaaaatgtttaaatgg-tctcaccaataactctttatcatttatatttcaacaaaa 7885972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 105 - 190
Target Start/End: Complemental strand, 48458022 - 48457937
Alignment:
Q  105 ctaatagatactcaaccactccaacagagaccctttaataaaatgtttaaatggatcccaccaataactctttattatttacattt 190  Q
    ||||||| |||||||| ||| ||| ||||||||| ||| |||| || |||||||  ||||||||||||||||||| ||||||||||    
T  48458022 ctaataggtactcaactacttcaatagagaccctctaacaaaaggtctaaatgggacccaccaataactctttatcatttacattt 48457937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 180
Target Start/End: Original strand, 39096037 - 39096111
Alignment:
Q  106 taatagatactcaaccactccaacagagaccctttaataaaatgtttaaatggatcccaccaataactctttatt 180  Q
    |||||| |||||||||||| |||  ||||| || |||||||| || |||||||||||||||||||||| ||||||    
T  39096037 taataggtactcaaccactacaatggagacactctaataaaaggtctaaatggatcccaccaataactatttatt 39096111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 7886156 - 7886096
Alignment:
Q  14 agcatccataatggagattttcaattttgaggtcttaaacaggtctcacatggacacatca 74  Q
    |||||| | |||||||||||| ||| |||||||||||||| |||||||||| |||||||||    
T  7886156 agcatctacaatggagatttttaatcttgaggtcttaaacgggtctcacatagacacatca 7886096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 102 - 170
Target Start/End: Complemental strand, 52669819 - 52669751
Alignment:
Q  102 tatctaatagatactcaaccactccaacagagaccctttaataaaatgtttaaatggatcccaccaata 170  Q
    |||||||||| ||||||||||||||||  |||||||| ||| |||| |||||| ||| |||||||||||    
T  52669819 tatctaataggtactcaaccactccaatggagaccctctaacaaaaggtttaattgggtcccaccaata 52669751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 196
Target Start/End: Complemental strand, 30285210 - 30285140
Alignment:
Q  126 caacagagaccctttaataaaatgtttaaatggatcccaccaataactctttattatttacatttcaacaa 196  Q
    |||| |||||||| | | ||||||| ||||| ||||| |||| |||||||| || ||||||||||||||||    
T  30285210 caacggagaccctatgaaaaaatgtctaaatcgatccaaccactaactcttcataatttacatttcaacaa 30285140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 170
Target Start/End: Complemental strand, 4489569 - 4489501
Alignment:
Q  102 tatctaatagatactcaaccactccaacagagaccctttaataaaatgtttaaatggatcccaccaata 170  Q
    ||||||||||  ||||||||||| |||  |||||||| ||| ||||||| ||| ||| |||||||||||    
T  4489569 tatctaataggcactcaaccactacaatggagaccctctaacaaaatgtctaattgggtcccaccaata 4489501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 38138152 - 38138212
Alignment:
Q  14 agcatccataatggagattttcaattttgaggtcttaaacaggtctcacatggacacatca 74  Q
    |||||||| ||||||||   |||  ||||||||||||||| ||||||| ||||||||||||    
T  38138152 agcatccacaatggagaccctcacatttgaggtcttaaacgggtctcatatggacacatca 38138212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 39095586 - 39095646
Alignment:
Q  14 agcatccataatggagattttcaattttgaggtcttaaacaggtctcacatggacacatca 74  Q
    |||||||| | ||||||  || |||||||| |||||||| ||||||||||| |||||||||    
T  39095586 agcatccacagtggagacctttaattttgaagtcttaaataggtctcacattgacacatca 39095646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 117 - 202
Target Start/End: Original strand, 4843 - 4928
Alignment:
Q  117 caaccactccaacagagaccctttaataaaatgtttaaatggatcccaccaataactctttattatttacatttcaacaaaaacaa 202  Q
    |||||||||||| |||||  || ||| |||||||| |||| | |||||||||||||||||||| ||||||| ||||||||||||||    
T  4843 caaccactccaatagagattctctaacaaaatgttaaaattggtcccaccaataactctttatcatttacaattcaacaaaaacaa 4928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 106 - 198
Target Start/End: Original strand, 1421863 - 1421955
Alignment:
Q  106 taatagatactcaaccactccaacagagaccctttaataaaatgtttaaatggatcccaccaataactctttattatttacatttcaacaaaa 198  Q
    |||||||||||||| || ||||| | ||| | | ||| | ||||| ||||||| ||| |||||||||||||||| ||||||||||||||||||    
T  1421863 taatagatactcaatcagtccaatatagatcatctaacacaatgtctaaatgggtcctaccaataactctttatcatttacatttcaacaaaa 1421955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 170
Target Start/End: Complemental strand, 17793374 - 17793309
Alignment:
Q  105 ctaatagatactcaaccactccaacagagaccctttaataaaatgtttaaatggatcccaccaata 170  Q
    ||||||| ||||||||||||| ||  |||||||||||| |||| |||||| ||| |||||||||||    
T  17793374 ctaataggtactcaaccactcaaatggagaccctttaagaaaaggtttaattgggtcccaccaata 17793309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 14728843 - 14728903
Alignment:
Q  14 agcatccataatggagattttcaattttgaggtcttaaacaggtctcacatggacacatca 74  Q
    |||||||| ||||||||   |||| ||||||||||||||  ||||||||||||||||||||    
T  14728843 agcatccacaatggagaccctcaactttgaggtcttaaatgggtctcacatggacacatca 14728903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 180
Target Start/End: Complemental strand, 24849012 - 24848938
Alignment:
Q  106 taatagatactcaaccactccaacagagaccctttaataaaatgtttaaatggatcccaccaataactctttatt 180  Q
    |||||| ||||||||||||| |   |||||||| ||| |||| ||||||| || |||||||||||||| ||||||    
T  24849012 taataggtactcaaccactctattggagaccctctaacaaaaggtttaaaagggtcccaccaataactatttatt 24848938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 72
Target Start/End: Complemental strand, 10288205 - 10288172
Alignment:
Q  39 tttgaggtcttaaacaggtctcacatggacacat 72  Q
    ||||||||||||||| ||||||||||||||||||    
T  10288205 tttgaggtcttaaacgggtctcacatggacacat 10288172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 102 - 170
Target Start/End: Complemental strand, 37187622 - 37187553
Alignment:
Q  102 tatctaatagatactcaaccactccaacagagaccctttaataaaatg-tttaaatggatcccaccaata 170  Q
    |||||||||| |||||||||||| |||  |||| | || ||||||| | |||||||||||||||||||||    
T  37187622 tatctaataggtactcaaccacttcaattgagatctttcaataaaaaggtttaaatggatcccaccaata 37187553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 181
Target Start/End: Original strand, 26705788 - 26705864
Alignment:
Q  105 ctaatagatactcaaccactccaacagagaccctttaataaaatgtttaaatggatcccaccaataactctttatta 181  Q
    ||||||| |||||||||||||||| ||||| ||| || ||||| || ||||||  | |||| ||||||| |||||||    
T  26705788 ctaataggtactcaaccactccaatagagatcctctattaaaaggtctaaatgagttccactaataactatttatta 26705864  T

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Target: scaffold0067 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 198
Target Start/End: Complemental strand, 363 - 278
Alignment:
Q  113 tactcaaccactccaacagagaccctttaataaaatgtttaaatggatcccaccaataactctttattatttacatttcaacaaaa 198  Q
    |||||||||||||||| ||||||||| ||  |||| |||| ||||   |||| |||||||||||||| ||||||||||||| ||||    
T  363 tactcaaccactccaatagagaccctctagcaaaaggtttcaatgagacccaacaataactctttatcatttacatttcaataaaa 278  T

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